BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494440
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:1... 1788 0.0
> AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18396302-18398116
FORWARD LENGTH=1268
Length=1268
Score = 1788 bits (968), Expect = 0.0
Identities = 1074/1126 (95%), Gaps = 4/1126 (0%)
Strand=Plus/Plus
Query 1 TTTTCCCAAATTTCTCTATTCTTCTTCGCTTCAGCCATGGGAACCCTATCTCTCTCCTCT 60
||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 14 TTTCCCCAAATTTCTTTCTTCTTCTTCGCTTCAGCCATGGGAACCCTATCTCTCTCATCT 73
Query 61 TCTCTAAAACCTTCTCTCGTTTCATCAAGACTCAATTCAGCTTCCTCTGCATCTTCTTCT 120
||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 74 TCTCTCAAACCTTCACTCGTTTCATCAAGACTCAATTCATCTTCCTCCGCATCTTCTTCT 133
Query 121 TCGTTTCCTAAACCAAACAATCTCTACCTCAAACCCACCAAACTCATTTCACCACCTCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TCGTTTCCTAAACCAAACAATCTCTACCTCAAACCCACCAAACTCATTTCACCACCTCTC 193
Query 181 AGAACAACTTCTCCGTCGCCATTGAGATTCGCCAATGCTTCAATCGAGATGTCACAGACA 240
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 194 AGAACAACTTCACCATCGCCATTGAGATTCGCCAATGCTTCAATCGAGATGTCGCAGACA 253
Query 241 CAGGAATCAGCTATTCGCGGAGCTGAATCTGACGTCATGGGTCTTCTTCTTAGGGAACGA 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 254 CAGGAATCAGCTATTCGCGGAGCTGAATCTGACGTCATGGGTCTTCTCCTTAGGGAACGA 313
Query 301 ATCGTCTTTCTTGGTAGTAGTATCGACGATTTCGTCGCTGATGCTATCATGAGTCAATTG 360
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 314 ATCGTCTTTCTCGGTAGTAGTATCGACGATTTCGTCGCTGATGCTATTATGAGTCAGTTG 373
Query 361 CTTCTTTTAGATGCTAAAGATCCTAAGAAAGATATCAAACTCTTTATCAATTCTCCTGGT 420
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 374 CTTCTCTTAGATGCTAAAGATCCAAAGAAAGATATCAAACTCTTTATCAATTCTCCTGGT 433
Query 421 GGTTCTCTCAGTGCAACCATGGCTATATACGATGTGGTTCAGCTTGTGAGAGCTGATGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GGTTCTCTCAGTGCAACCATGGCTATATACGATGTGGTTCAGCTTGTGAGAGCTGATGTT 493
Query 481 TCGACGATTGCTCTTGGCATTGCTGCATCAACAGCTTCGATAATTCTTGGTGCGGGAACT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 494 TCGACGATTGCTCTTGGCATTGCTGCATCAACAGCTTCGATTATTCTTGGTGCGGGAACT 553
Query 541 AAAGGCAAGCGCTTTGCTATGCCCAACACGAGGATAATGATTCATCAACCACTTGGAGGT 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 554 AAAGGCAAGCGCTTTGCTATGCCCAACACGAGGATAATGATTCATCAACCTCTTGGAGGT 613
Query 601 GCGAGCGGTCAAGCTATAGATGTTGAGATTCAAGCTAAGGAGGTTATGCATAACAAGAAC 660
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 614 GCAAGCGGTCAAGCTATAGATGTTGAGATTCAAGCTAAGGAAGTTATGCATAACAAGAAC 673
Query 661 AATGTCACCAGCATTATCGCGGGATGTACTAGTCGATCGTTTGAGCAGGTTCTTAAAGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 674 AATGTCACCAGCATTATCGCGGGATGTACTAGTCGATCGTTTGAGCAGGTTCTGAAAGAT 733
Query 721 ATTGATAGAGACCGGTACATGTCTCCAATTGAAGCGGTTGAGTATGGTTTAATAGATGGA 780
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 734 ATTGATAGGGACCGGTACATGTCTCCAATTGAAGCAGTTGAGTATGGTTTAATTGATGGA 793
Query 781 GTTATCGATGGTGACAGCATTATTCCTCTCGAACCCGTTCCTGATAGAGTGAAACCGAGA 840
||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 794 GTTATTGATGGAGACAGCATTATTCCTCTTGAACCTGTTCCTGATAGAGTGAAACCGAGA 853
Query 841 GTAAACTACGAGGAGATTAGCAAGGATCCAATGAAATTCTTGACTCCCGAGATACCAGAT 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 854 GTAAACTACGAGGAGATTAGCAAGGATCCGATGAAATTCTTGACTCCCGAGATACCTGAT 913
Query 901 GATGAGATTTACTAAAGGCAAGCTCATCTAGAACCAGGGATCTTCCAATGTGACTAAGAC 960
|||||||| |||||||| ||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 914 GATGAGATCTACTAAAGCCAAGCTCGTCTAGAAGCAGGGATCTTCAAATGTGACTAAGAC 973
Query 961 TAGCGGTTTTGAGGAAAAAGCTCGATATCTTCTGCGGTTACTGGTGTTGGCTTTGCGAAA 1020
|||| |||| |||||||| |||| || |||||||||||||||||| ||||||||||||||
Sbjct 974 TAGCAGTTTCGAGGAAAA-GCTCAATTTCTTCTGCGGTTACTGGTATTGGCTTTGCGAAA 1032
Query 1021 CCGAAGCTGGTAGTACTTGCCTTTTGTAATCTCATATTTCACTTGTTCAGAAAATAAT-G 1079
||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| |
Sbjct 1033 CCGAAGCTGGTAGTACTTGGCTTTTGTA-TCTCATATTTCAGTTGTTCAGAAAATAATTG 1091
Query 1080 TTCCTTGTATCACTCTGTTTTGAGCAAAATGACTTTAAGAAG-TGT 1124
||| || |||||||||||||||| |||||||||| |||||| |||
Sbjct 1092 TTCTTTAAATCACTCTGTTTTGAGGAAAATGACTTAAAGAAGCTGT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5