BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494441
Length=2443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45380.1 | Symbols: ATDUR3, DUR3 | solute:sodium symporters;... 2274 0.0
> AT5G45380.1 | Symbols: ATDUR3, DUR3 | solute:sodium symporters;urea
transmembrane transporters | chr5:18391124-18395894 FORWARD
LENGTH=2526
Length=2526
Score = 2274 bits (1231), Expect = 0.0
Identities = 1406/1488 (94%), Gaps = 22/1488 (1%)
Strand=Plus/Plus
Query 10 TTCttttttttGCTAAATCAAGATTCTTTCTAA-CTGAAGATTCTTTCTATTAGCTATTA 68
||| ||| |||||||||||||||||||||| || ||||||||||||| || | ||
Sbjct 65 TTCCTTTGTTTGCTAAATCAAGATTCTTTC-AAGTTGAAGATTCTTTC---TA---A-TA 116
Query 69 GTTTTATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT 128
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 G-TATATACAAGAGGGAAGAATCTTTCAACTATCACTCCCTACAAATTCCATGAGAAAAT 175
Query 129 TCACTTTTCCGATAAAAACTTAaagaagaagaagaagaagaagaagaaTGGCCACATGTC 188
|||||||||| || ||||| | | ||||||||| || |||||||||| |||||||
Sbjct 176 TCACTTTTCCAATCAAAAC-----GTA-AAGAAGAAG-AG--GAAGAATGGCTACATGTC 226
Query 189 CTCCTTTCGATTTCTCGGCCAAATATTACGACGGTGACGGCGGCGGATGCCAGAGGCAGA 248
||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 227 CTCCTTTCGATTTCTCGACCAAATATTACGATGGTGA---CGGCGGATGCCAGAGGCAGA 283
Query 249 GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTTATTCTTG 308
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 284 GCAGCTTCTTCGGAGGCACGACGGTGCTCGATCAAGGCGTTGGCTACGCCGTGATTCTTG 343
Query 309 GTTTTGGTGCTTTCTTTGCCATCTTCACATCTTTTTTGGTATGGCTAGAAAAACGATATG 368
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 344 GTTTTGGTGCTTTCTTTGCCGTCTTCACATCTTTTTTGGTATGGTTAGAAAAACGATATG 403
Query 369 TGGGAGCTCGTCATACCTCGGAATGGTTCAATACAGCTGGAAGAAACGTTAAGACAGGAC 428
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 404 TGGGAGCTCGTCATACATCGGAATGGTTCAATACAGCGGGAAGAAACGTTAAGACAGGAC 463
Query 429 TCATTGCAAGTGTCATTGTGTCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA 488
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TTATTGCAAGTGTCATTGTATCACAGTGGACATGGGCTGCGACCATACTGCAAAGTTCAA 523
Query 489 ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATTC 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 524 ACGTAGCATGGCAGTATGGGGTTAGTGGACCGTTTTGGTACGCTAGTGGAGCCACCATAC 583
Query 549 AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATTAAAAGAAAGGCTCCCAATGCTCACA 608
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 584 AGGTGCTGTTGTTTGGTGTGATGGCGATTGAGATAAAAAGAAAGGCTCCTAATGCTCACA 643
Query 609 CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTATTTTTGGTGT 668
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 644 CGGTCTGCGAAATCGTGAAGGCTCGTTGGGGAACCGCAACACATATAGTGTTTTTGGTGT 703
Query 669 TTTGTTTGGCGACAAACGTCATTGTGACGGCGATGCTCTTGCTCGGTGGCTCGGCTGTGG 728
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 704 TTTGTTTGGCGACAAACGTCGTTGTGACGGCGATGCTCTTGCTCGGCGGCTCTGCTGTGG 763
Query 729 TGAATGCTCTTACCGGAGTGAATCTATACGCTGCAAGCTTTCTTATTCCTCTCGGTGTTG 788
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || |
Sbjct 764 TGAATGCTCTAACCGGAGTGAATCTATACGCCGCAAGCTTTCTCATTCCTCTCGGCGTCG 823
Query 789 TTGTCTATACTTTGGCCGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG 848
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTGTCTATACTTTGGCTGGAGGACTTAAAGCTACTTTCCTCGCAAGCTACGTTCACTCCG 883
Query 849 TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAGTGAGC 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 884 TTATAGTTCACGTGGCTCTAGTCGTCTTTGTGTTTCTGGTCTACACATCGAGTAAAGAGC 943
Query 909 TTGGGAGTCCGTCCGTGGTCTATGACCGACTAAGAGATATGGTCGCTAAGTCAAGGTCAT 968
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 944 TTGGCAGTCCGTCCGTGGTCTATGACCGACTAAAAGATATGGTCGCTAAGTCAAGGTCAT 1003
Query 969 GCACCGAGCCGCTCTCGCACCACGATCAAGCTTGCGGTCCGGTGGATGGCAACTTCAGAG 1028
|||| ||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||||
Sbjct 1004 GCACTGAGCCACTCTCGCACCACGGTCAAGCTTGTGGTCCGGTTGATGGCAACTTTAGAG 1063
Query 1029 GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTTGGTCTCATCAACATTGTCG 1088
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1064 GCTCCTATCTCACCATGTTGAGCTCTGGCGGCGCTGTCTTCGGTCTCATCAACATTGTCG 1123
Query 1089 GAAACTTCGGCACTGTCTTCGTAGACAATGGTTATTGGGTGAGTGCAATAGCTGCTCGAC 1148
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1124 GAAACTTCGGCACTGTCTTCGTAGATAATGGTTATTGGGTGAGTGCAATAGCTGCTCGGC 1183
Query 1149 CTTCATCAACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCTTTCT 1208
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1184 CTTCGTCGACCCACAAAGGGTATTTGCTTGGTGGACTCGTGTGGTTCGCTGTACCGTTCT 1243
Query 1209 CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGATG 1268
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1244 CTCTAGCTACCTCGTTAGGTCTCGGCGCACTAGCCCTTGACTTGCCTATATCTAAGGACG 1303
Query 1269 AGGCTGACAGAGGTTTGGTTCCGCCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT 1328
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1304 AGGCTGACCGAGGTTTGGTTCCACCTGCCACAGCCATTGCTCTCATGGGTAAATCAGGAT 1363
Query 1329 CCTTGCTTCTTCTCACTATGCTGTTCATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA 1388
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1364 CCTTGCTTCTACTCACTATGCTATTTATGGCTGTAACATCGGCTGGTTCTTCCGAGCTAA 1423
Query 1389 TTGCAGTCTCATCGCTGTTCACATACGACATCTACCGAACATACATAAACCCTAGAGCAA 1448
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1424 TTGCAGTCTCATCGCTCTTTACATATGACATCTACCGAACATACATAAACCCTAGAGCAA 1483
Query 1449 CCGGTAAACAAATCTTGAGAATCTCAAGATCCGCGGTTCTCGGATTTG 1496
|||||| ||||||||||| ||||||||||| ||| ||||| |||||||
Sbjct 1484 CCGGTAGACAAATCTTGAAAATCTCAAGATGCGCTGTTCTTGGATTTG 1531
Score = 887 bits (480), Expect = 0.0
Identities = 603/659 (92%), Gaps = 22/659 (3%)
Strand=Plus/Plus
Query 1803 GTCTACTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG 1862
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 GTCTAGTCCGGCCACAGAATTACGATTGGTCGACGACGAGGGAGATCAAAGTAGTGGAAG 1906
Query 1863 CCG-ATGCTTCAGGAGACGAAGAAGTTGATGTTCCGGCCGAAGAACTAAGAGAAGAGAAG 1921
| | |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1907 C-GTATGCTTCAGGGGACGAAGATGTTGATGTTCCTGCCGAAGAGCTAAGAGAAGAGAAG 1965
Query 1922 CTTAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGCCTTGTCTTCACTATCCTCATTGTT 1981
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1966 CTGAGAAGAGCCAAAGCTTGGATTGTGAAATGGGGTCTTGTCTTCACTATCCTCATTGTT 2025
Query 1982 ATAATTTGGCCAGTTCTCTCTCTCCCAGCACGTGTGTTTAGTAGAGGATATTTCTGGTTT 2041
| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 2026 GTCATTTGGCCAGTTCTCTCTCTCCCAGCTCGCGTATTTAGCAGAGGATATTTCTGGTTT 2085
Query 2042 TGGGCAATTGTGGCTGTAGCTTGGGGAACTATAGGATCAATTGTGATAATTGGTTTGCCA 2101
|||||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 2086 TGGGCAATTGTGGCAATAGCTTGGGGAACTATAGGATCCATCGTGATCATTGGTTTGCCA 2145
Query 2102 TTGGTCGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATATG 2161
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2146 TTGGTGGAAAGTTGGGACACGATCAAGAGTGTTTGTATGGGAATGTTCACAAACGATAGG 2205
Query 2162 GTAATGAACAAGCTTGATGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTACCA 2221
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2206 GTGATGAAAAAGCTTGACGACTTGAACCATAGGCTTCGAGCTTTAACCATGGCTGTGCCA 2265
Query 2222 GAAGCTGAGAAGATTTATTTGCTTGAACTTGAGAAGACCAAGAAAACCGATGAAGAACGT 2281
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2266 GAAGCTGAGAAGATATATTTGCTTGAACTTGAGAAGACCAAGAAAAATGATGAAGAAGGT 2325
Query 2282 TGAAGAAATATAATATTGGGTACACAAAAGGTTAATGATACTTTCTTTTTGTTTATATGC 2341
||||||||||| ||||||||||||||||||||| |||||| | ||||||||| |||||
Sbjct 2326 TGAAGAAATATCATATTGGGTACACAAAAGGTT---GATACTCTATTTTTGTTTGTATGC 2382
Query 2342 TTTGTTTGGTTGTCTTTTCTTGTTA-T-----------C--A--AA-GCTATCTCCGTTT 2384
||||||||||||||||||||||||| | | | || |||||||||||||
Sbjct 2383 TTTGTTTGGTTGTCTTTTCTTGTTAATTTGTGTGAAATCGCATCAAAGCTATCTCCGTTT 2442
Query 2385 GTATAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACTGTGAA 2443
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2443 GTACAATGTGTTCAACATCTTTGATAAGTGTATGTATTATACAAACAACAGACAGTGAA 2501
Score = 381 bits (206), Expect = 2e-104
Identities = 237/252 (94%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 1498 CTGGTGTTTCACTTGGATGGATGTATCTCGC-ATGGGAGTGCTCATTGGTTCTGCGGTCA 1556
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1571 CTGGTGTTTCACTTGGATGGATGTATCTCGCAATGGGAGTACTCATTGGTTCTGCGGTCA 1630
Query 1557 TTCCTATAGCTTTCATGCTCTTATGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAT 1616
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1631 TTCCCATTGCTTTCATGCTCTTGTGGAGTAAAGCCAATGCCTTTGGTGCAATTCTTGGAG 1690
Query 1617 CGACCTCGGGTTGTGTTCTTGGGATCATTACTTGGCTTTCTACCGCAAAGATACAGTACG 1676
||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1691 CGACCTCGGGTTGTGTTTTTGGGATCATTACTTGGCTAACTACCGCAAAGACACAGTACG 1750
Query 1677 GACGCGTTGATCTTGATAGCACTGGGAAAAATGGCCCCATGTTAGCTGGTAACCTCGTCG 1736
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1751 GACGCGTTGATCTTGATAGCACCGGGAAAAATGGCCCTATGTTAGCTGGTAACCTCGTTG 1810
Query 1737 CTATTCTAGCAG 1748
| |||||| |||
Sbjct 1811 CGATTCTAACAG 1822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121334717265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5