BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494442
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45370.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1977 0.0
AT4G19185.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 776 0.0
> AT5G45370.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:18388291-18390420 FORWARD LENGTH=1404
Length=1404
Score = 1977 bits (1070), Expect = 0.0
Identities = 1198/1259 (95%), Gaps = 12/1259 (1%)
Strand=Plus/Plus
Query 1 TTACAAAGCAAATCAAAGGATCTCAATTTCTTCTTAGTCAACAGGTGTttcttctcttct 60
||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct 36 TTACAGAGCAAATCAAAGGATCTCAATTTC-T-TTAGTCAACAGGTGTTCCTTCTCTTCT 93
Query 61 tcttcttcGATTCGGAGGTAGAGAAGAAACATGGCAGCTCCGGCGATAGTTAACGGCGGC 120
|| | ||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 94 TC--C-TCGATTCGGAGGTAGAGAAGAAAAATGGCAGCTCCGGCGATCCTAAACGGCGGC 150
Query 121 GATGCGACGGAGAGAGAAACACGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 GATGCGACGGAGAGAGAAACACGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATA 210
Query 181 AATGGAGGTTACCATGTGGTTACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTC 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 AATGGAGGATACCATGTGGTTACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTT 270
Query 241 TTTTGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TTTTGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGT 330
Query 301 GAAAGAAGGATCAGACCTCCTATGAATAGAAGCGTCTTCTTTTCACTCTTCTTTCTTGGT 360
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 331 GAAAGAACGATCAGACCTCCTATGAATAGAAGCATCTTCTTTTCACTCTTCTTTCTTGGT 390
Query 361 TTAGCAGGGATATTTGGGAACCAGTTACTATTTCTTATGGGTTTATCGTACACGAATCCA 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 391 TTAGCAGGGATATTTGGGAACCAGTTACTATTTCTTATGGGTTTATCTTACACGAATCCA 450
Query 421 ACTTATGCCGCAGCTATACAACCATCAATCCCAGTCTTTACATTTCTCTTGGCTGTCATG 480
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 451 ACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTCTTGGCTGTCTTG 510
Query 481 ATGGGTACAGAAAAAGTGAACTTGTTTAAAATCGAGGGCCAAACGAAAGTTGGAGGTACT 540
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 511 ATGGGTACAGAAAAAGTGAACTTGTTGAAAGTCGAGGGCCAAACGAAAGTTGGAGGTACT 570
Query 541 CTTGTTTGTGTTTCGGGTGCCGTGGCAATGGCTTTGTTCCGTGGTCCAGCCTTGTTTGGA 600
|||||||||||||||||||| | || ||||||||||| |||||||||||||||||||||
Sbjct 571 CTTGTTTGTGTTTCGGGTGCTATAGCGATGGCTTTGTTTCGTGGTCCAGCCTTGTTTGGA 630
Query 601 GGTAATGATGCAGTAGATTCAGTGAAAAGTGTAATAATTGATAGAAGTCAACCAGAGAC- 659
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 631 GGTAAAGATGCAGCAGATTCAGTGAAAAGTGTAATTATTGATAGAAGTCAACCAGAG-CT 689
Query 660 TAATGGGTGGTTAGTCTCTAGTTTTCTTGGGT-TTGGGTTTGATCTATGGCACATTGGAG 718
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 690 TAATGGGTGGTTAGTCTCTAGTTTTCTT-GGTCTTGGGTTTGATCAATGGCACATTGGAG 748
Query 719 TTATATGCTTGATAGGAAATTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGCACCGG 778
|| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TTTTATGTTTGATTGGAAACTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGCACCGG 808
Query 779 TTTTGAAGAAGTATCCTGCCTACCTTTCGGTTGCTGCGTATTCATACTTCTTCGGTGCAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TTTTGAAGAAGTATCCTGCCTACCTTTCGGTTGCTGCGTATTCATACTTCTTCGGTGCAT 868
Query 839 CAATAATGATCACAACAGCTATCTTGTTTGTTAGAGAGCCTAAAGATTGGAGCTTAACAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CAATAATGATCACAACAGCTATCTTGTTTGTTAGAGAGCCTAAAGATTGGAGCTTAACAC 928
Query 899 AATCTGAAGTTCTTGCTGTTATATTCGCAGGAGTGTTTGCGTCAGCTCTAAACTATGGAC 958
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 929 AATCTGAGGTTCTTGCTGTTATATTCGCAGGAGTGTTTGCCTCAGCTCTAAACTATGGAC 988
Query 959 TCTTGACTTGGTCGAATAAAATTCTTGGAGCTGCTTTGGTTTCTCTATACAATCCTCTTC 1018
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 989 TCTTGACTTGGTCCAATAAAATTCTTGGAGCTGCTTTGGTTTCCCTATACAATCCTCTTC 1048
Query 1019 AGCCTGCAACATCCGCCTTTTTATCAACGATTTTCCTCGGCAGCCCGATCTATCTCGGAA 1078
||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1049 AGCCTGCAACATCGGCCTTTTTATCGACAATTTTCCTCGGCAGCCCGATCTATCTTGGAA 1108
Query 1079 GCATTTTGGGCGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGCATCTTATA 1138
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1109 GCGTTTTGGGTGGAATCCTCATCATTTGCGGGCTTTATATGGTTACTTGGGCATCTTACA 1168
Query 1139 GAGAACAACAAACAACAGT-ATCTGGGAATGAGACTGCTTCTTCTAGTGGTGTAAGAATC 1197
|||| |||||||||||| | | |||||||||||| |||||||||||||| ||||||||||
Sbjct 1169 GAGAGCAACAAACAACA-TCAGCTGGGAATGAGATTGCTTCTTCTAGTGATGTAAGAATC 1227
Query 1198 TCAGAACCTTTGATTTACAGAGATGAGACTGGTAAATAAATTAAGAACAGGTAAAGAAA 1256
|| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1228 TCGGAACCTTTCATTTACAGAGATGAGACTGGTAAATAAAT-AAGAAAAGGTAAAGAAA 1285
Score = 100 bits (54), Expect = 3e-20
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1257 ACAAATCATACAATTTTTTCGAGTTCAAACATTGATTCTATAAACGATAAACAATTCAAA 1316
||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 1331 ACAAATCATACAATTTTTTCGAGTTCAAACATTGATTCTTTAAACGGTAAATAATTCAAA 1390
Query 1317 ATA 1319
|||
Sbjct 1391 ATA 1393
> AT4G19185.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:10489042-10491671 REVERSE LENGTH=1539
Length=1539
Score = 776 bits (420), Expect = 0.0
Identities = 890/1112 (80%), Gaps = 51/1112 (5%)
Strand=Plus/Plus
Query 124 GCGACGGAGAGAGAAACACGAATGGCTCACTCTGCAATGACATTGGTTCAGGTCATAAAT 183
||| |||||||||| | || ||||| ||| |||| ||| | || |||||| || | |||
Sbjct 220 GCGGCGGAGAGAGACGCTCGGATGGCGCACACTGCTATGGCGTTTGTTCAGCTCTTTAAT 279
Query 184 GGAGGTTACCATGTGGTTACGAAAGTAGCTCTTAACGTTGGTGTAAATCAGCTCGTCTTT 243
|| || ||||||||| |||| |||||||||||||| ||||| || || ||||| |||||
Sbjct 280 GGTGGATACCATGTGATTACTAAAGTAGCTCTTAATGTTGGAGTCAACCAGCTTGTCTTC 339
Query 244 TGTGTCTTTCGCGATCTTCTTGCTCTCTCCATTCTCGCACCTCTCGCTTTTTTCCGCGAA 303
||||| | || ||||||||||||||||| |||||||| ||||| |||| |||||||||
Sbjct 340 TGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTCCGCGAA 399
Query 304 AGAAGGATCAGACCTCCTATGAATAGAAG-CGTCTTCTTTTCACTCTTCTTTCTTGGTTT 362
|||| ||||||| |||| ||||||| ||| | || |||| ||| |||||||||| || ||
Sbjct 400 AGAAAGATCAGAACTCCAATGAATAAAAGCCTTC-TCTTGTCATTCTTCTTTCTGGGCTT 458
Query 363 AGCAGGGATATTTGGGAACCAGTTACTATTTCTTATGGGT-TTATCGTACACGAATCCAA 421
||||||| |||||||||||||||| |||||||||| ||| ||| | ||||| ||||| |
Sbjct 459 AGCAGGGGTATTTGGGAACCAGTTGTTATTTCTTATCGGTCTTA-CATACACAAATCCCA 517
Query 422 CTTATGCCGCAGCTATACAACCATCAATCCCAGTCTTTACATTTCTCTTGGCTGTCATGA 481
||||||| || || || |||||||| ||||| ||||| || |||||||||||||||||||
Sbjct 518 CTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGA 577
Query 482 TGGGTACAGAAAAAGTGAACTTGTTTAAAATCGAGGGCCAAACGAAAGTTGGAGGTACTC 541
|||||||||||| |||||| ||||| | |||||| || ||||| || |||||||| || |
Sbjct 578 TGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGCACAC 637
Query 542 TTGTTTGTGTT-TCGGGTGCCGTGG-CAATGGCTT-TGTTCCGTGGTCCAGCCTTGTTTG 598
|||| |||||| | |||||| || || ||| || | || || ||||| |||||||| |
Sbjct 638 TTGTGTGTGTTAT-GGGTGCTGTCTTCA-TGG-TTGTATTTCGAGGTCCGGCCTTGTTAG 694
Query 599 GAGGTAATGATGCAGTAGATT-C-AGTGAA-AAGTGTAATAATTGATAGAAG-TCAACCA 654
||| ||| ||||||| | || | | |||| || || ||| | || || ||| ||||||
Sbjct 695 GAGATAAAGATGCAG-ACTTTGCGA-TGAACAA-TGAAATCAGTGCTA-AAGGTCAACCT 750
Query 655 GAGACTAATGGGTGGTTAGTCTCTAGTTTTCTTGGGT-TTGGGTTTGATCTATGGCACAT 713
||| ||| ||| |||||||||||| ||||||| | | |||| ||||| | |||||||||
Sbjct 751 GAGCCTACTGGTTGGTTAGTCTCTGGTTTTCTCGA-TCTTGGATTTGAGCAATGGCACAT 809
Query 714 TGGAGTTATATGCTTGATAGGAAATTGTATGTGTATGGCTGCTTTTCTCGCTGTCCAAGC 773
||||||| |||||||||| ||||| || |||||||||||| ||||||| || | || ||
Sbjct 810 TGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGC 869
Query 774 ACCGGTTTTGAAGAAGTATCCTGCCTACCTTTCGGTTGCTGCGT-ATTCATACTTCTTCG 832
|| |||||||||||||||| || | ||||| |||||||| | || |||||||||| |
Sbjct 870 GCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTAT-CATACTTCTTTG 928
Query 833 GTGCA-TCAATAATGAT-CACAACAGCTATCTTGTTTGTTAGAG-AGCCTAAAG-ATTGG 888
| || | | ||||| | |||||||||| |||| | || || || |||| | | |||||
Sbjct 929 GCACAGT-ACTAATG-TGCACAACAGCTTTCTT-TATGGTAAAGGAGCC-ATTGGATTGG 984
Query 889 A-GCTTAACACAATCTGAAGTTCTTGCTGTTATAT-TCGCAGGAGTGTTT-GCGTCAGCT 945
| ||| |||||||||||| |||||||| ||||||| | |||||||| | | || |||||
Sbjct 985 AAGCT-AACACAATCTGAGGTTCTTGCAGTTATATAT-GCAGGAGT-TATCGCATCAGCA 1041
Query 946 CTAAACTATGGACTCTTGACTTGGTCGAATAAAATTCTTGGAGCTGCTTTGGTTTCTCTA 1005
|||||||||||||||||||||||||| ||||| ||| |||| |||| |||||| ||||
Sbjct 1042 CTAAACTATGGACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTC 1101
Query 1006 TACAATCCTCTTCAGCCTGCAACATCCGCCTTTT-TATCAACGA-T-TTTCCTCGGCAGC 1062
|||||||||||||| || || |||| || ||| |||| | || | |||| |||| |||
Sbjct 1102 TACAATCCTCTTCAACCCGCTGCATCAGC-TTTCCTATCGA-GAATCTTTC-TCGGTAGC 1158
Query 1063 CCGATCTATCTCGGAAGCATTTTGGGCGGAATCCTCATCATT-TGCGGGCTTTATATGGT 1121
|| || |||||||||||| || |||| ||| || |||||||| | || || ||||||||
Sbjct 1159 CCCATTTATCTCGGAAGCGTTGTGGGTGGATTCTTCATCATTCTA-GGACTCTATATGGT 1217
Query 1122 TACTTGGGCATC-TTATAGAGAAC-AACAAACAACAGTATCTGGGAATGAGACTGCTTCT 1179
||||||||||| || |||||| | || ||||| | || || |||| || || ||| |
Sbjct 1218 CACTTGGGCATCGTT-TAGAGAGCGAA-AAACAGCGGTTTCCGGGATTGGGATTGCGCCC 1275
Query 1180 TCTAGTGGTGTAAGAATCTCAGAACCTTTGAT 1211
| | |||| ||| || |||||| ||| ||||
Sbjct 1276 -C-A-TGGTCTAAAAACCTCAGAGCCTCTGAT 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5