BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494445
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45360.1 | Symbols: | F-box family protein | chr5:18384521-... 1724 0.0
> AT5G45360.1 | Symbols: | F-box family protein | chr5:18384521-18386785
REVERSE LENGTH=1328
Length=1328
Score = 1724 bits (933), Expect = 0.0
Identities = 1074/1142 (94%), Gaps = 10/1142 (1%)
Strand=Plus/Plus
Query 1 ACGCCACCGATTCCCATCGCCAACCctctc--gtctctctctctctctAATCCCTTCCTT 58
|||||||||||||| | ||||||||||||| |||| | |||||||| ||||| ||||||
Sbjct 1 ACGCCACCGATTCCAAACGCCAACCCTCTCGAGTCT-TGTCTCTCTCCAATCCTTTCCTT 59
Query 59 GGCCGCATAAACACAACCATCGTCGCCCGAGCTTTGATCTTCACCGACTGAACAAG-ATG 117
|||||||||||| |||||||||||| | |||||||||||||||||||||||| ||| |||
Sbjct 60 GGCCGCATAAACGCAACCATCGTCGTCGGAGCTTTGATCTTCACCGACTGAA-AAGTATG 118
Query 118 TCTGTTTCCGATGAGGAAGACGAGTGTTTCGCTCGATTCCTCGAATCAGAAGTCTCATCG 177
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCTGTTTCCGATGAGGAAGATGAGTGTTTCGCTCGATTCCTCGAATCAGAAGTCTCATCG 178
Query 178 GTAGAGGATAAAGAAGAAACAAAAGAACCTGAAGCAAAACGGCAACGTATTGAGAAAGCC 237
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 179 GTAGAGGATAAAGAAGAAACGAAAGAACCTGAGGCAAAACGGCAACGTATTGAGAAAGGC 238
Query 238 GAAACAAAGGCTCTAGAGAAGGATGGTGAAGATCAAAAGGAAGATGTTAACAAAGATAGA 297
||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct 239 GAAACAAAGGCTCTAGAGAAGGA---TGAAGATCAAAAGGAAAATGGTAACAAAGATAAA 295
Query 298 ACTGTTGCAAAGAGAATAGAGAGTGGAGTTTTCAGTAATGTTCCTACTGAGCTGTTTCGT 357
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 296 ACTGATGCAAAGAGAATAGAGAGTGGAGTTTTCACCAATGTTCCTACTGAGCTGTTTCGT 355
Query 358 CATATCCTCAAGTTCTTATCTTCTGAGGATCTTGTATCATGCTCCATGGTGTGTAAATTT 417
||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 356 CATATTCTCAAGTTCTTATCTTCGGAGGATCTTGTATCATGCTCCTTGGTTTGTAAATTT 415
Query 418 CTTAATTTTGCTGCGGCTGATGAATCATTATGGCGTCGCCTCTACTGTATCCGGTGGGGT 477
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 416 CTCAATTTTGCTGCGGCTGATGAATCCTTATGGCGTCGCCTGTACTGTATCCGGTGGGGT 475
Query 478 TTAACTCCTCCAACTAGAAAGTTACGTGAAAGTGCTTGGAAGAAGCTTTATATTGATCGT 537
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 CTAACTCTTCCAAGTAGAAAGTTACGTGAATCTGCTTGGAAGAAGCTTTATATTGATCGT 535
Query 538 GACGAGCAGGACATGATTGAACTTGTCAGAACCTGTCCGTCGGATTTTAAAGAGTATTAC 597
|| || ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 536 GATGAACAGGACATGATTGAACTTGTCAGAACCTGTCCGTCGGATTTCAAGGAGTATTAC 595
Query 598 ATGCAAATGCAAGCAGCAAAGAGAAGCCAAGCACCTCTTCCGTCCCAGATGGTGGATGAC 657
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTACATATGCAAGCAGCAAAGAGAAGCCAAGCACCTCTTCCGTCCCAGATGGTGGATGAC 655
Query 658 CGGATAATTCTTGACAAAACTGTACTTGAACAAGTATCTCTGTGGAAGAAAAGCAAAGGA 717
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 656 CGGATAATTCTTGACAATACTGTACTTGAACAAGTTTCTCTATGGAAGAAAAGCAAAGGA 715
Query 718 CTTACCGATAAGGCTGTCACTGGCCATATTTGTTTGGGAACCAAATGTTCATACCATCAG 777
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTTACTGATAAGGCTGTCACTGGCCATATTTGTTTGGGAACCAAATGTTCATACCATCAG 775
Query 778 ATTGACGACGTGTTCATATGCAAAGAGACGGGAAATGTTCATGTGTGCGATGATAACTGC 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 776 ATTGACGACGTGTTCATATGCAAAGAGACGGGAAATGTTCATGTATGCGATGATAACTGC 835
Query 838 AAGGAAGTAATACTGAGTCCAGAGGAAGACCTCATGGTGTGTACTATCTCAGGACTTTGT 897
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 836 AAGGAAGTAATACTGAGTCCAGAGGGTGACCTCATGGTGTGTACTATCTCAGGAGTTTGT 895
Query 898 TCTGATACTTTGCTCGTACAAACTGATCCAGACGCAGATGGCTGTTATGAGGAAGAAGCT 957
||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 896 TCTGATACTTTACTTGTACAAACTGAGCCAGACGCAGATGGGTGTTATGAGGAAGAAGCT 955
Query 958 GAACTAGAAGCTGAAGTATTCATGGATAAAAGTCGATTGGCAAGAGCTTTTGAACTTGGC 1017
|||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||
Sbjct 956 GAACTAGAAGCTGAAGTATTCACAGATAAAAGCCGATTAGCCCGAGCTTTTGAACTTGGC 1015
Query 1018 TACAACTGTGATGATGAGCAGGAATTGGAACGTACCCTGAGGTTCTGCTGAGCAAAAGTC 1077
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1016 TACAACTGCGATGATGAGCAGGAACTGGAACGTACCCTGAGGTTCTGCTGAGCAAAAGTC 1075
Query 1078 TC-AGCCTTTTGTCCAATTTCATAAGGCCTACTTTCTGTAAGGTCTTAtctctctctctc 1136
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1076 TCGA-CCTTTTGTCCAATTTCATAAGGCCTACTTTCTGTAAGGTCTTCTCTCTCTCTCTC 1134
Query 1137 tc 1138
||
Sbjct 1135 TC 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5