BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494446
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45350.1 | Symbols: | proline-rich family protein | chr5:18... 1232 0.0
> AT5G45350.1 | Symbols: | proline-rich family protein | chr5:18381837-18383699
REVERSE LENGTH=862
Length=862
Score = 1232 bits (667), Expect = 0.0
Identities = 816/883 (92%), Gaps = 30/883 (3%)
Strand=Plus/Plus
Query 1 CTCTACCAATTTTGTTTCGACATATTTCGCGATTCGTGTCTTAGGTTTTGTTGCTGATTG 60
|||| ||||||| |||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 1 CTCTTCCAATTTCGTTTCGACATATTTCGCGATTC--GTCTAAGGTTTTGTTACTGATTG 58
Query 61 AGAAAACATGGGAGGTGATAATGACAATGACAAAGGCAAAGGGTTTCAAGGGTATCCTCC 120
|||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||
Sbjct 59 AGAAAACATGGGAGGTGACAATGATAATGACAAAGACAAAGGGTTTCATGGGTATCCTCC 118
Query 121 CGCTGGATACCCGCCGGGTCTTGGGGCTTCTCCGCCTGCTGGATATCCACAACAAGGTTA 180
|||||||||||| || | |||||||| ||| || |||||||| ||||||||||||||
Sbjct 119 CGCTGGATACCCACC---CCCTGGGGCTTATCCACCCGCTGGATACCCACAACAAGGTTA 175
Query 181 CCCTCCACCACCTGGTGCTTACCCGCCTGCAGGTTATCCTCCGGGTGCATACCCACCTGC 240
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 176 CCCTCCACCACCCGGTGCTTACCCGCCTGCAGGTTATCCTCCGGGTGCCTACCCACCTGC 235
Query 241 ACCTGGTGGTTATCCTCCAGCCCCTGGTTATGGTGGTTATCCTCCAGCTCCTGGTTATGG 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCCTGGTGGTTATCCTCCCGCCCCTGGTTATGGTGGTTATCCTCCAGCTCCTGGTTATGG 295
Query 301 AGGTTATCCTCCTGCACCTGGTCATGGTGGTTACCCTCCTGCTGGCTATCCTGCTAATCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 296 AGGTTATCCTCCTGCACCTGGTCATGGTGGTTACCCTCCTGCTGGCTATCCTGCTCATCA 355
Query 361 CTCAGGACACGCAGGAGGAATTGGGGGTATGATTGCAGGTGCTGCAGCTGCCTATGGAGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTCAGGACACGCAGGAGGAATTGGGGGTATGATTGCAGGTGCTGCAGCTGCCTATGGAGC 415
Query 421 TCACCACATAGCTCATAGCTCTCACGCCCCTTACGGACATGCTGCATACGGTCACGGCTT 480
||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 416 TCACCACGTAGCTCATAGCTCTCACGGTCCTTACGGACATGCTGCATATGGTCACGGTTT 475
Query 481 TGGCCATGGACATGGCTATGGCTATGGTCATGGT-A----A-GTTCAAGCATGGGAAGCA 534
||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 476 TGGCCATGGTCATGGCTATGGCTATGGTCATGGTCATGGTAAGTTCAAGCATGGGAAGCA 535
Query 535 CGGGAAGTTCAAGCATGGGAAGCATGGGATGCTTGGAGGAGGCAAGTTCAAGAAGTGGAA 594
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 536 CGGGAAGTTCAAGCATGGGAAGCATGGAATGTTTGGAGGAGGCAAGTTCAAGAAGTGGAA 595
Query 595 GTGATCTAGTTAATACCTTTTGTGAATCTCTCTGGACTGACCAATGTTTCAAATAAGCCC 654
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 596 GTGATCTAGTTAATACCTTTTGTGAATCTGTCTGGACTGACCAATGTTTCAAATAAGCCC 655
Query 655 TAAAACATTATTATATAAGTTGGCTTTCGTCGGTTAGATTGCTGGTTCGAGTTGGAATAA 714
|||| |||||| ||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 TAAA-CATTAT-ATA-A-GTTGACTTTCGTCGGTTAGATTGCTGGTTCGAGTTGGAATAA 711
Query 715 TT-AAACTTAATTAGTAGT-ATGATATCTTATTGTGTACTTTGAAGCTATCTTTGGCTTT 772
|| |||||||||||||| | | | ||||||||||||||||| |||||||| ||||||||
Sbjct 712 TTGAAACTTAATTAGTA-TCA--A-ATCTTATTGTGTACTTTAAAGCTATCGTTGGCTTT 767
Query 773 ATAATGACAGATTCTGCTGGTTTCGGTGTGTGGTTTTTGAGAtttttttGTATATATACT 832
|||||||||||||||| | ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 768 ATAATGACAGATTCTG--G-TTTCGGTGTGTTGTTTTA-AGATTTTT--GTATATA--CT 819
Query 833 GATTTTTAATATTGCTTAAGCTTATGGAAGTCATGATTATGAT 875
| |||||| ||||||||||||||| |||||||||||||||||
Sbjct 820 GTTTTTTAC-ATTGCTTAAGCTTATAGAAGTCATGATTATGAT 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5