BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494453
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45290.2 | Symbols: | RING/U-box superfamily protein | chr5... 3352 0.0
> AT5G45290.2 | Symbols: | RING/U-box superfamily protein | chr5:18349782-18352498
REVERSE LENGTH=2276
Length=2276
Score = 3352 bits (1815), Expect = 0.0
Identities = 2116/2254 (94%), Gaps = 50/2254 (2%)
Strand=Plus/Plus
Query 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60
Query 61 AAAACTCTTTCCTTTTCTTCAAAGCATTTCTCTTTGGTT-AAAGAAAACACACATAGCTT 119
|||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 61 AAAA-TCTTTCCTTTTCTTCAAAGCATTTCTCTTTGATTCAAAGACAACACACATAGCTT 119
Query 120 AG-T--TGC-TTCA--T-T----a-aaaaaaaCTTCAGATTTCTAGGTACTTTTTCCAAA 167
|| | | | || | | | | ||||||| |||||||||| ||||| || || | ||
Sbjct 120 AGTTCCTACATTAATTTCTCGCAATAAAAAAAGTTCAGATTTCGAGGTA-TTCTTGC-AA 177
Query 168 T-T-GATCGAGTTTCAGATCT-GGAATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 224
| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 178 TCTCGATCGAGTTTCAGATCTGGGGATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 237
Query 225 ATGACGAATTGGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 284
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATGACGAATTCGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 297
Query 285 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAAACTTGTGGGTCTT 344
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAGACTTGTGGGTCTT 357
Query 345 GTGGCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 404
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTGTCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 417
Query 405 TCGGAGCAAATCATGTCTAGGCTCGTC-GCTGGCAGCGAGAGAAGTTTCTGACGTGGCTC 463
|||||||||||||||||||||||||| || | |||||||||| ||||||||||||||
Sbjct 418 CCGGAGCAAATCATGTCTAGGCTCGTCGGC-GATGGCGAGAGAAGCTTCTGACGTGGCTC 476
Query 464 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGGAGAAGATCAAAGAGTCTTTTTT 523
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGAAGAAGATCAAAGAGTCTTTTTT 536
Query 524 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATGATAGTGACGATGATA 583
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 537 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATTACAGTGATGATGATA 596
Query 584 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTTCACGGCGTA 643
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTACACGGCGTA 656
Query 644 GAATGGAGA-CAAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGAGAAG 702
||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 GAATGGA-ATCGAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGATAAG 715
Query 703 AAATCTGAAAACGAAACACATTGTGATGAGCTTGAGCTTga--a-ga---agaagaagaa 756
|||||||||||||||| |||||||||||||||||||||||| | || | | |||
Sbjct 716 AAATCTGAAAACGAAAGACATTGTGATGAGCTTGAGCTTGATGATGAGTGTGGTGTTGAA 775
Query 757 gaagaagaagaGGAAGCTAATGTAAGCAATGTACAGAGGGGAAATGTTAGTGGTTCGATT 816
||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct 776 GAAGAAGAAGAGGAAGCTAGTGTAAGCAATGTACAGATGAGAAATGTTAGCGGTTCGATT 835
Query 817 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATCCCTGGTAACATA 876
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATTCCTGGTAACATA 895
Query 877 GGCTCTAGACTTACCAGAGCATCAAGCTCAAGATTTTTCAACACTACTTATCCGGTCTCT 936
|||||||||||| |||||| ||||| ||||||| |||||||| |||||||| ||||||
Sbjct 896 AGCTCTAGACTTAGCAGAGCTTCAAGTTCAAGATCCTTCAACACGACTTATCCAGTCTCT 955
Query 937 TCTTCTCTTCA-AGAAGAAGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCATTGA 995
||||||| | | |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 956 TCTTCTCAT-AGAGAAGATGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCAATGA 1014
Query 996 TAGAATCGAGTCTCCGATAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1055
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TAGAGTTGAGTCTCCGAGAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1074
Query 1056 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGACAGTAG 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1075 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGATAGTAC 1134
Query 1116 TTATGCTGGAATTCTTGATAGAAGACATGTTGTTCGGGAGCCTTCCATTGATCGGAATGT 1175
|||||||||| |||||||||||||||||||||| || || ||||| ||||| || |||||
Sbjct 1135 TTATGCTGGACTTCTTGATAGAAGACATGTTGTACGAGAACCTTCTATTGAGCGCAATGT 1194
Query 1176 TAGATTTAGCAGAACTCTGAGTGTTGGAAGACTCCGTGACAGAGTTCTTCGCCGATCTTC 1235
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1195 TAGATTTAGTAGAACTCTGAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGCCGATCTTC 1254
Query 1236 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1314
Query 1296 CTCTGCTGAAACCGCAGCAGCAGAGGATACTCCTGTGACTTCAACGTCTATACTAAATCG 1355
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1315 CTCTGCTGAAACCGCAGCAGCAGAGGATGCTCCTGTGACTTCAACGTCTATACTAAATCG 1374
Query 1356 ATCCGCTTCTAGCATTCGAAGGACCTTATTTGGCATTCAAGATCACGAGACACCAGCTGC 1415
||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1375 TTCCGCTTCTAGCATTCGAAGGACCTTATTCGGCATTCAGGATCATGAGACACCAGCTGC 1434
Query 1416 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1494
Query 1476 AAGGAGGAGAATAAGATCGCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1535
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AAGGAGGAGAATAAGATCTCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1554
Query 1536 TGCCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGTTG 1595
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1555 TGTCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGCTG 1614
Query 1596 CACATGCCGTGCGGTTACTAACCGTGGTTCCACAACAGCAACAACCGATGAAACAAATGC 1655
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1615 CACATGCCGTGCAGTTACTAACCGTGGTTCGACAACAGCAACAACCGATGAAACAAATGC 1674
Query 1656 AAGAGCTAGCATCTCGAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1715
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AAGAGCTAGCATCTCAAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1734
Query 1716 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1794
Query 1776 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1854
Query 1836 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACACTAT 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1855 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACTCTAT 1914
Query 1896 AAGGACACTTCCTTGTCATCATGAATTCCACAAAGCCTGTGTGGATAAATGGCTCAAGGA 1955
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1915 AAGGACACTTCCTTGTCATCATGAATTCCACAAAACCTGTGTAGATAAATGGCTCAAGGA 1974
Query 1956 GATTCACAGCAGAGTGTGTCCGCTATGTCGAGGAGATATTTGTAGACATGATCCATCATT 2015
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1975 GATTCACAGCAGAGTATGTCCGCTGTGTCGAGGAGATATTTGTAGACATGATCCATCATC 2034
Query 2016 GGAACAACATTGATTACAGTCTTATAGACATAGTGCTGAAAGATTTTGATTCTACAAGAG 2075
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2035 GGAACAACATTGATTACAGTCTTATAGACATAATGCTGAAAGATTTTGATTCTACAAGAG 2094
Query 2076 ACCAGGAACATTCATCGGTTTGTGCCTGCAACTGAATCAAAAATGTTGTGT-TTTGCTT- 2133
|||| |||||||||||||||| |||||||||||||||||| | |||||||| |||||||
Sbjct 2095 ACCAAGAACATTCATCGGTTTTTGCCTGCAACTGAATCAATATTGTTGTGTGTTTGCTTT 2154
Query 2134 ---------A-C--AC--TGGAAAACAAAATTCATACTTTAAAAGATGTAAACTTATGA- 2178
| | || |||||||||||| | | | |||||||||||||||||| | |
Sbjct 2155 TTGTTTCGTAGCTTACAATGGAAAACAAAAGTGACAGTTTAAAAGATGTAAACTTGT-AT 2213
Query 2179 ACCAAATTGATCCAGCATATCTGTAAGAAATGTT 2212
||||| |||||||||||||||||||||||| |||
Sbjct 2214 ACCAATTTGATCCAGCATATCTGTAAGAAA-GTT 2246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110491399545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5