BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494453 Length=2227 Score E Sequences producing significant alignments: (Bits) Value AT5G45290.2 | Symbols: | RING/U-box superfamily protein | chr5... 3352 0.0 > AT5G45290.2 | Symbols: | RING/U-box superfamily protein | chr5:18349782-18352498 REVERSE LENGTH=2276 Length=2276 Score = 3352 bits (1815), Expect = 0.0 Identities = 2116/2254 (94%), Gaps = 50/2254 (2%) Strand=Plus/Plus Query 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCTCTCTCTCTATCGCAGATAGGTGCTTTGTCTCCTTCTTCGATTACTCCGATCACCTA 60 Query 61 AAAACTCTTTCCTTTTCTTCAAAGCATTTCTCTTTGGTT-AAAGAAAACACACATAGCTT 119 |||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 61 AAAA-TCTTTCCTTTTCTTCAAAGCATTTCTCTTTGATTCAAAGACAACACACATAGCTT 119 Query 120 AG-T--TGC-TTCA--T-T----a-aaaaaaaCTTCAGATTTCTAGGTACTTTTTCCAAA 167 || | | | || | | | | ||||||| |||||||||| ||||| || || | || Sbjct 120 AGTTCCTACATTAATTTCTCGCAATAAAAAAAGTTCAGATTTCGAGGTA-TTCTTGC-AA 177 Query 168 T-T-GATCGAGTTTCAGATCT-GGAATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 224 | | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 178 TCTCGATCGAGTTTCAGATCTGGGGATTCAATAATTAGGGCTTTTGATTCTGCATTGTCA 237 Query 225 ATGACGAATTGGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 284 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 ATGACGAATTCGGGTTTCAATGTAAAGATCTGAGGAAAAAGTTTCGATCTTTAGATTTTG 297 Query 285 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAAACTTGTGGGTCTT 344 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 298 ACTTGGAGGTTTCTTCGATTGGTGGATTTGAAGAAGATGGGGAAAAGACTTGTGGGTCTT 357 Query 345 GTGGCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 404 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GTGTCAATGATGTAATTTTAGCAGAAAGTTGTTTGCTTTTGAGAAGAAGATGGGATCTGG 417 Query 405 TCGGAGCAAATCATGTCTAGGCTCGTC-GCTGGCAGCGAGAGAAGTTTCTGACGTGGCTC 463 |||||||||||||||||||||||||| || | |||||||||| |||||||||||||| Sbjct 418 CCGGAGCAAATCATGTCTAGGCTCGTCGGC-GATGGCGAGAGAAGCTTCTGACGTGGCTC 476 Query 464 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGGAGAAGATCAAAGAGTCTTTTTT 523 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 477 AACCTCCTCCGTCGTCTTCTAGTGGTGGTGGAAGGAGAAGAAGATCAAAGAGTCTTTTTT 536 Query 524 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATGATAGTGACGATGATA 583 |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct 537 GTGGTCTTCACTCTTCTTGTCTTGCTTCATCTTCTACTTCTCATTACAGTGATGATGATA 596 Query 584 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTTCACGGCGTA 643 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 597 ATGATGAACAGGTGTGTAATGGATGGATGAGGAAGAGTCATGGAAGTGTTACACGGCGTA 656 Query 644 GAATGGAGA-CAAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGAGAAG 702 ||||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 657 GAATGGA-ATCGAGAAGAGATGCATCAGATTGCTATGATAAAGAATTGAAAGATGATAAG 715 Query 703 AAATCTGAAAACGAAACACATTGTGATGAGCTTGAGCTTga--a-ga---agaagaagaa 756 |||||||||||||||| |||||||||||||||||||||||| | || | | ||| Sbjct 716 AAATCTGAAAACGAAAGACATTGTGATGAGCTTGAGCTTGATGATGAGTGTGGTGTTGAA 775 Query 757 gaagaagaagaGGAAGCTAATGTAAGCAATGTACAGAGGGGAAATGTTAGTGGTTCGATT 816 ||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||| Sbjct 776 GAAGAAGAAGAGGAAGCTAGTGTAAGCAATGTACAGATGAGAAATGTTAGCGGTTCGATT 835 Query 817 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATCCCTGGTAACATA 876 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 836 CAAGAATCTTCTACTCCAGGTCGAGTTTTTTCGCATTTCAAATTCATTCCTGGTAACATA 895 Query 877 GGCTCTAGACTTACCAGAGCATCAAGCTCAAGATTTTTCAACACTACTTATCCGGTCTCT 936 |||||||||||| |||||| ||||| ||||||| |||||||| |||||||| |||||| Sbjct 896 AGCTCTAGACTTAGCAGAGCTTCAAGTTCAAGATCCTTCAACACGACTTATCCAGTCTCT 955 Query 937 TCTTCTCTTCA-AGAAGAAGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCATTGA 995 ||||||| | | |||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 956 TCTTCTCAT-AGAGAAGATGGTGTTACTTCACCTTCAGAATCTGCTATTAGGCTCAATGA 1014 Query 996 TAGAATCGAGTCTCCGATAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1055 |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 TAGAGTTGAGTCTCCGAGAATTCCTGTGATTGACAATGTAGTTAGAGATATTGATGCCAT 1074 Query 1056 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGACAGTAG 1115 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1075 GAGATTTGGGGAAGATGGTAGCTTACGTTCTCCGAGAGTAGTTAATGGTATGGATAGTAC 1134 Query 1116 TTATGCTGGAATTCTTGATAGAAGACATGTTGTTCGGGAGCCTTCCATTGATCGGAATGT 1175 |||||||||| |||||||||||||||||||||| || || ||||| ||||| || ||||| Sbjct 1135 TTATGCTGGACTTCTTGATAGAAGACATGTTGTACGAGAACCTTCTATTGAGCGCAATGT 1194 Query 1176 TAGATTTAGCAGAACTCTGAGTGTTGGAAGACTCCGTGACAGAGTTCTTCGCCGATCTTC 1235 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1195 TAGATTTAGTAGAACTCTGAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGCCGATCTTC 1254 Query 1236 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 ACTCTCTGATTTCGCATTCCGTCCCTCGCCACATCAGGGAGAAGAAGATACTGATCTCTT 1314 Query 1296 CTCTGCTGAAACCGCAGCAGCAGAGGATACTCCTGTGACTTCAACGTCTATACTAAATCG 1355 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1315 CTCTGCTGAAACCGCAGCAGCAGAGGATGCTCCTGTGACTTCAACGTCTATACTAAATCG 1374 Query 1356 ATCCGCTTCTAGCATTCGAAGGACCTTATTTGGCATTCAAGATCACGAGACACCAGCTGC 1415 ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| Sbjct 1375 TTCCGCTTCTAGCATTCGAAGGACCTTATTCGGCATTCAGGATCATGAGACACCAGCTGC 1434 Query 1416 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 TCTTGTGAGAGAAGGGAGGTATCAAGGTTTATTAGAACACAGATCAGATTTCCTTGAAAG 1494 Query 1476 AAGGAGGAGAATAAGATCGCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1535 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 AAGGAGGAGAATAAGATCTCAGGTTCGCGCTCTTCAAAGATTAGGAAGCCGGTTTGAGAA 1554 Query 1536 TGCCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGTTG 1595 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1555 TGTCGCAGTCCATCATGATAGATCTTGTGTCTTATCAGGTCAAGATCAAGCAGGTCGCTG 1614 Query 1596 CACATGCCGTGCGGTTACTAACCGTGGTTCCACAACAGCAACAACCGATGAAACAAATGC 1655 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1615 CACATGCCGTGCAGTTACTAACCGTGGTTCGACAACAGCAACAACCGATGAAACAAATGC 1674 Query 1656 AAGAGCTAGCATCTCGAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1715 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1675 AAGAGCTAGCATCTCAAGGATAGTATTGCTAGCTGAAGCTCTCTTCGAGGTTCTTGATGA 1734 Query 1716 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1735 AATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATC 1794 Query 1776 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1795 TGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA 1854 Query 1836 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACACTAT 1895 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1855 AAGCGAGGATCCATCACAATGTTACATATGCCTTGTGGAATATGAAGAAGCAGACTCTAT 1914 Query 1896 AAGGACACTTCCTTGTCATCATGAATTCCACAAAGCCTGTGTGGATAAATGGCTCAAGGA 1955 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1915 AAGGACACTTCCTTGTCATCATGAATTCCACAAAACCTGTGTAGATAAATGGCTCAAGGA 1974 Query 1956 GATTCACAGCAGAGTGTGTCCGCTATGTCGAGGAGATATTTGTAGACATGATCCATCATT 2015 ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1975 GATTCACAGCAGAGTATGTCCGCTGTGTCGAGGAGATATTTGTAGACATGATCCATCATC 2034 Query 2016 GGAACAACATTGATTACAGTCTTATAGACATAGTGCTGAAAGATTTTGATTCTACAAGAG 2075 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2035 GGAACAACATTGATTACAGTCTTATAGACATAATGCTGAAAGATTTTGATTCTACAAGAG 2094 Query 2076 ACCAGGAACATTCATCGGTTTGTGCCTGCAACTGAATCAAAAATGTTGTGT-TTTGCTT- 2133 |||| |||||||||||||||| |||||||||||||||||| | |||||||| ||||||| Sbjct 2095 ACCAAGAACATTCATCGGTTTTTGCCTGCAACTGAATCAATATTGTTGTGTGTTTGCTTT 2154 Query 2134 ---------A-C--AC--TGGAAAACAAAATTCATACTTTAAAAGATGTAAACTTATGA- 2178 | | || |||||||||||| | | | |||||||||||||||||| | | Sbjct 2155 TTGTTTCGTAGCTTACAATGGAAAACAAAAGTGACAGTTTAAAAGATGTAAACTTGT-AT 2213 Query 2179 ACCAAATTGATCCAGCATATCTGTAAGAAATGTT 2212 ||||| |||||||||||||||||||||||| ||| Sbjct 2214 ACCAATTTGATCCAGCATATCTGTAAGAAA-GTT 2246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110491399545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5