BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494455
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45280.2 | Symbols: | Pectinacetylesterase family protein |... 2174 0.0
AT4G19410.1 | Symbols: | Pectinacetylesterase family protein |... 989 0.0
> AT5G45280.2 | Symbols: | Pectinacetylesterase family protein
| chr5:18345595-18349695 FORWARD LENGTH=1496
Length=1496
Score = 2174 bits (1177), Expect = 0.0
Identities = 1335/1411 (95%), Gaps = 11/1411 (1%)
Strand=Plus/Plus
Query 1 GAACTTGTAAACCTTACTCTCGAAGACTCCTCT-TTCACTCA-TTTTAC-CT-TACAAAA 56
|||||||||||||||||||||||||| |||||| || ||||| |||||| | || ||||
Sbjct 1 GAACTTGTAAACCTTACTCTCGAAGAGTCCTCTGTT-ACTCATTTTTACATTGTA-AAAA 58
Query 57 ATAATTTCTACTCTTCTCTACGTGAATAAGAAGAATCTGAAGAGCCATTTTCTCAAGAAT 116
| || |||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 59 AAAACTTCTTTTCTTCTCTACGTGAAT---AAGAATCTGAAGAGTCATTTTCTCAAGAAT 115
Query 117 GGCGAGGCTAAAGCAATTGTGGTCAAGTTTTTTGGTGCTGGCCGTGGTGGTGATTGGGGC 176
| || ||||||| ||| |||||||||| |||| ||||| |||||||||||||| || ||
Sbjct 116 GACGTGGCTAAAACAAATGTGGTCAAGCATTTTAGTGCTAGCCGTGGTGGTGATCGGAGC 175
Query 177 CAGAGCTGTGCCCATCACATATCTTGAATCCGCGGTAGCTAAAGGAGCTGTGTGTTTGGA 236
|||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||
Sbjct 176 CAGAGCTGTGCCCATCACGTATCTTGAATCTGCAGTGGCTAAAGGAGCTGTGTGTTTGGA 235
Query 237 TGGTAGCGCACCAGCATACCATTTCGATAAGGGATCTGGCTCAGGAGCGAACAATTGGAT 296
||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 236 TGGTAGCGCGCCAGCATACCATTTCGATAAGGGATCGGGCTCAGGAGTGAACAATTGGAT 295
Query 297 CGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTACATGCGTACAACGTAAAAG 356
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 296 CGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTACATGCGTTCAACGTAAAAG 355
Query 357 TACAATGAAGGGTTCTTCTAAGCTTATGAACAAAGACTTTGGTTTCTCTGGTATCTTGGG 416
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 TACAATGAAGGGTTCTTCTAAGCTTATGAACAAAGACTTTGGTTTCTCCGGTATCTTGGG 415
Query 417 TGGCAAGCAAAGCACCAATCCAGACTTTTACAATTGGAATAGAATCAAAGTTCGGTATTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TGGCAAGCAAAGCACCAATCCAGACTTTTACAATTGGAATAGAATCAAAGTTCGGTATTG 475
Query 477 CGATGGTTCATCTTTCACTGGCGATATAGAAGCTGTTGATCCGACGAACAAGCTGTTCTT 536
|||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 476 CGATGGTTCATCTTTCACCGGTGATATAGAAGCTGTTGATCCGACGCACAAGCTGTTCTT 535
Query 537 TCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGATCTTATGGCTAAGGGGATGAGCAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 536 TCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGATCTTATGGCTAAGGGAATGAGCAA 595
Query 597 CGCTCAAAACGCGATACTCTCTGGTTGTTCAGCTGGAGCATTGGCTGCGATTCTACATTG 656
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGCTCAAAACGCTATACTCTCCGGTTGTTCAGCTGGAGCATTGGCTGCGATTCTACATTG 655
Query 657 CGACCAGTTCAAGTCCATTCTCCCTAAAACGGCTAAGGTCAAATGTGTTTCTGACGCCGG 716
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 656 CGACCAGTTCAAGTCCACTCTCCCTAAAACGGCTAAGGTCAAATGTGTTTCTGACGCTGG 715
Query 717 TTACTTCATCCACGGTAAAGATATCACTGGAGGATCTTACATCCAATCGTACTACGCCAA 776
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 TTACTTCATCCACGGTAAGGATATCACTGGAGGATCTTACATCCAATCCTACTACGCCAA 775
Query 777 AGTCGTAGCGACCCACGGATCTGCAAAGAGTCTACCTGCTTCTTGCACCTCAAGTATGAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGTCGTAGCGACCCACGGATCTGCAAAGAGTCTACCTGCTTCTTGCACCTCAAGTATGAA 835
Query 837 GCCCGAGTTGTGTTTCTTCCCTCAATACGTTGCTCAGACCTTGCAAACACCGCTTTTCGT 896
||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 836 GCCTGATTTGTGTTTCTTCCCTCAATACGTTGCTAAGACCTTACAAACACCGCTTTTCGT 895
Query 897 CATCAATGCCGCCTTCGATTCTTGGCAGATCAAGAACGTTTTGGCGCCAACCTCTGTTGA 956
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 896 CATCAATGCCGCCTTCGATTCTTGGCAGATCAAGAATGTATTGGCACCAACCTCTGTTGA 955
Query 957 TAAAAGCAAAGCGTGGAAGACTTGTAAGCTTGATCTTAAGAAGTGTACGGCCGCTCAGCT 1016
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TAAAAGCAAAGCATGGAAGACTTGTAAGCTTGATCTTAAGAAGTGTACGGCCGCTCAGCT 1015
Query 1017 TCAAACCGTTCAAGGGTATAGAGACCAAGTGTTGGCTGCGTTGGCACCGGTTCGATCCGA 1076
||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1016 TCAAACCGTTCAAGGATATAGAGACCAAGTGTTGGCTGCGTTGGCGCCTGTTCGATCCG- 1074
Query 1077 C-ACAACGAGCGGATTGTTCTTAGACTCGTGCCACGCTCATTGCCAAGGTGGAAGCGCTG 1135
| || |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1075 CGACGACGAACGGATTGTTCTTGGACTCGTGCCATGCTCATTGCCAAGGTGGAAGCGCTG 1134
Query 1136 CCACTTGGTCCGGCGATGGAGGTCCTACAGTGGCGAATACGAAAATGGCTAAGGCGGTTG 1195
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1135 CCACTTGGTCCGGCGACAAAGGTCCCACAGTCGCGAATACGAAAATGGCTAAGGCGGTTG 1194
Query 1196 CAGATTGGTTCTTTGAAAGGAGTACGTTTCAGAACATAGATTGTTCATCGCTGAATTGCA 1255
||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1195 GAGATTGGTTCTTTGAGAGGAGTACGTTTCAGAACGTAGATTGTTCATCGCTTAATTGCA 1254
Query 1256 ACCCTACTTGCCCTGCAGTATCTACTGAAGACTAAATTTTATTTATTGATGTTTTAAAAT 1315
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 1255 ACCCTACTTGCCCTGCAGTATCTACTGAAGACTAAAATTTATTCATTGATGTCTTAAAAT 1314
Query 1316 TTATTCATCTTTGGAATATTGTTCTTGAAATTTAAAAGTACAATAATATAATTGATACAA 1375
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1315 TTATTCATCTTTGGAATATTGTTCTTGAAATTTAAAAGTAAAATAATATAATTGATACAA 1374
Query 1376 TTTCATTCGAATAAATAAAATCATTTGCCCT 1406
|||||||||||||||||||||| ||||||||
Sbjct 1375 TTTCATTCGAATAAATAAAATCCTTTGCCCT 1405
> AT4G19410.1 | Symbols: | Pectinacetylesterase family protein
| chr4:10582021-10585758 REVERSE LENGTH=1475
Length=1475
Score = 989 bits (535), Expect = 0.0
Identities = 999/1218 (82%), Gaps = 51/1218 (4%)
Strand=Plus/Plus
Query 101 CCATTTTCTCAAGAATGGCGAGGCTAAAGCAATTG-TGGTCAAGTTTTTTGGTGCTGGCC 159
|||||||| ||||||||| |||||| |||||| || ||||||||| | | || ||||
Sbjct 119 CCATTTTCGCAAGAATGGGGAGGCTTAAGCAA-TGTTGGTCAAGTCTGCTAGTATTGGCA 177
Query 160 GTGGTGGTGATTGGGGCCAGAGCTGTGCCCATCACATATCTTGAATCCGCGGTAGCTAAA 219
||| ||||||| || | |||| || |||||||| ||||| || ||| || ||||||
Sbjct 178 GTGTTGGTGATCGGAACTGGAGCCGTTCCCATCACTTATCTCCAAAGCGCCGTCGCTAAA 237
Query 220 GGAGCTGTGTGTTTGGATGGTAGCGCACCAGCATACCATTTCGA-TAAGGGATCTGGCTC 278
||||| |||||||||||||| || |||||||| |||||||| || ||||| | ||| ||
Sbjct 238 GGAGCCGTGTGTTTGGATGGGAGTGCACCAGCTTACCATTTTGACAAAGGG-TTTGGTTC 296
Query 279 AGGAGCGAACAATTGGATCGTTCATATGGAAGGAGGAGGATGGTGCACTGATATAGCTAC 338
|| | |||||||||||||| || ||||| |||||||||||||| || || | ||| |
Sbjct 297 GGGTGTTAACAATTGGATCGTCCACATGGAGGGAGGAGGATGGTGTACCGACGTTGCTTC 356
Query 339 ATGCGT-A-CAACGTAAAAGTACAATGAAGGGTTCTTCTAAGCTT-ATGAACAAAGACTT 395
|| || | ||||||| ||||||||||||||||||| || || ||||||||||||||
Sbjct 357 AT--GTAATGAACGTAAGGGTACAATGAAGGGTTCTTCCAA-ATTCATGAACAAAGACTT 413
Query 396 TGG-TTTCTCTGGTATCTTGGGTGGCAAGCAAAGCACCAATCCAGACTTT-TACAATTGG 453
||| ||| || |||||||||||||||||||||||||| || ||||| ||| |||||||||
Sbjct 414 TGGATTT-TCCGGTATCTTGGGTGGCAAGCAAAGCACTAACCCAGA-TTTCTACAATTGG 471
Query 454 AATAGAATCAAAGTTCGGTATTGCGATGGTTCAT-CTTTCACTGGCGATATAGAAGCTGT 512
|| ||||||||||| || ||||| || || |||| |||| || ||| || ||||||| ||
Sbjct 472 AACAGAATCAAAGTACGATATTGTGACGGATCATCCTTT-ACCGGCAATGTAGAAGCCGT 530
Query 513 TGATCCGACGAACAAGCTGTTCTTTCGCGGTGCTAGGGTTTGGCGTGCGGTGATCGATGA 572
| ||||| | |||||||||||||| |||||||| | ||||||||||||||| | |||||
Sbjct 531 TAATCCGGCAAACAAGCTGTTCTTCCGCGGTGCCCGAGTTTGGCGTGCGGTGGTTGATGA 590
Query 573 TCTTATGGCTAAGGGGATGAGCAACGCTCAAAACGCGATACTCTCTGGTTGTTCAGCTGG 632
|||||||||||| || |||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 591 TCTTATGGCTAAAGGAATGAAAAACGCTCAAAACGCTATACTCTCCGGTTGTTCAGCTGG 650
Query 633 AGCATTGGCTGCGATTCTACATTGCGACCAGTT-CAAGT-CCATTCT-CCCTAAAACGGC 689
|||||||||||||||||| ||||| ||| | || | || |||| || ||| || | ||
Sbjct 651 AGCATTGGCTGCGATTCTTCATTGTGAC-ACTTTCC-GTGCCATACTTCCCCGAA-CAGC 707
Query 690 TAAG-GTCAAATGTGTTTCTGACGCCGGTTACTTCATCCACGGTAAAGATATCACTGGAG 748
|| | ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 708 TA-GCGTCAAATGTGTTTCTGATGCCGGTTACTTTATCCACGGTAAAGATATCACAGGAG 766
Query 749 GATCTTACATCCAATCGTACTAC-GCCAAAGTCGTAGCGAC-CCACGGATCTGCAAAGAG 806
|||| ||||| ||||| || ||| || |||||||| || || ||||||||||||||||||
Sbjct 767 GATCATACATTCAATCATATTACAGC-AAAGTCGTCGC-ACTCCACGGATCTGCAAAGAG 824
Query 807 TCTACCTGCTTCTTGCACCTCAAGTATGAAGCCCGAGTTGTGTTTCTTCCCTCAATACGT 866
||| |||| |||||| ||||||| ||||| || || | ||||||||||| ||||||||
Sbjct 825 TCTTCCTGTTTCTTGTACCTCAAAAATGAAACCAGAACTCTGTTTCTTCCCGCAATACGT 884
Query 867 TGCTCAGACCTTGCAAACACCGCT-TTTCGTCATCAATGCCGCCTTCGATTCTTGGCAGA 925
| || || ||| ||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 885 CGTTCCTTCCATGCGAACACCGCTCTTT-GTCATCAATGCCGCTTTTGATTCTTGGCAGA 943
Query 926 TCAAGAACGTTTTGGCGCCAACCT-CTGTTGATAAAAGCAAAGCGTGGAAGACTTGTAAG 984
|||||||||||||||| ||||| | |||||||||| | |||| |||||||| |||||||
Sbjct 944 TCAAGAACGTTTTGGCTCCAAC-TGCTGTTGATAAGGGAAAAGAGTGGAAGAATTGTAAG 1002
Query 985 CTTGATCTTAAGAAGTGTACG-GCCGCTCAGCTTCAAA-CCGTTCAAGGGTATAGAGACC 1042
|||||||||||||| |||| | ||||||||||| |||| |||| ||||||| |||||| |
Sbjct 1003 CTTGATCTTAAGAAATGTA-GTGCCGCTCAGCT-CAAAACCGTCCAAGGGTTTAGAGATC 1060
Query 1043 A-AGTGTTG-GCTGCGTTGGCACCGGTTCGATCCG-ACACAA-CGAGCGGATTGTTCTTA 1098
| | || || | || ||| ||||||||| | | | |||| | || ||||||||||||
Sbjct 1061 AGA-TGATGCGA-GCATTGTCACCGGTTC-A-CAGTACACCGTCTAGAGGATTGTTCTTA 1116
Query 1099 GACTCGTGCCACGCTCATTGCCAAGGTGGAAGCGCTGCCACTTGGTCCGGCGATGGAGGT 1158
|||||||| ||||||||||||||||| |||||||| ||| |||||||||| || ||||
Sbjct 1117 GACTCGTGTCACGCTCATTGCCAAGGAGGAAGCGCCGCCTCTTGGTCCGGTGACAAAGGT 1176
Query 1159 CCTACA-GTGGCGAATACGAAAATGGCTAAGGCGGTTGCAGATTGGTTCTT-TGAAAGGA 1216
|| || || || ||||||| ||| || || || || | | | ||||| || || |||
Sbjct 1177 CCC-CAAGTCGCCAATACGAGAATTGCGAAAGCAGTCGGAAACTGGTT-TTATGGCCGGA 1234
Query 1217 GTACGTTTCAGAACATAGATTGTTCATCGCTGAATTGCAACCCTACTTGCCCTGC-AGTA 1275
|| | |||||||| ||||||||| | |||| || ||| || |||||||| ||||| | |
Sbjct 1235 GTGCATTTCAGAAGATAGATTGTCCGTCGCCGACTTGTAATCCTACTTGTCCTGCTA-TC 1293
Query 1276 TCTACTGAAGACTA-AAT 1292
|||||||||||||| |||
Sbjct 1294 TCTACTGAAGACTAGAAT 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5