BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494458
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45275.1 | Symbols: | Major facilitator superfamily protein... 2972 0.0
> AT5G45275.1 | Symbols: | Major facilitator superfamily protein
| chr5:18334405-18337380 REVERSE LENGTH=1924
Length=1924
Score = 2972 bits (1609), Expect = 0.0
Identities = 1785/1870 (95%), Gaps = 12/1870 (1%)
Strand=Plus/Plus
Query 1 ttttttttCTCGATTCGTCGTAACCAGTGAAGAAGCTCGAATCAAACAAAagagagagag 60
|||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||
Sbjct 3 TTTTTTTTCTCGATTCGTCGAAACAAGTGAAGAAGCTCGAATCAAAC----GAGTGAGAG 58
Query 61 agaACa-aaaaaa-aaaaTCAAAATCTCCGGTGATTCAGGAACCGTACGTCGGAGATTGT 118
|||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 59 AGAACACAAAAAACAAAATCAAAATCTCCGGTGAATCAGGAACTGTACGTCGGAGATTGT 118
Query 119 -TAAACACGGTGAG-GGAAAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTCGTA 176
|||||||||| | | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 GAAAACACGGTG-GTCG-AAAAAGATGGCGGGACAATCACGAAAATGGATGATTCTGGTA 176
Query 177 GCGACGATCTGGATTCAAGCTTTCACTGGTACGAATTTCGATTTCTCGACGTACTCGTCG 236
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 177 GCGACGATTTGGATTCAAGCATTCACCGGTACGAATTTCGATTTCTCGACGTATTCGTCG 236
Query 237 AATTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTTGCTTCG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 AATTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTCGCTTCG 296
Query 297 GATCTTGGGAAAGTTTTCGGTTGGTCATCGGGACTTGCACTCTTGTATTTCCCTCTTTGG 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATCTTGGTAAAGTTTTCGGTTGGTCATCGGGACTTGCACTCTTGTATTTCCCTCTTTGG 356
Query 357 ACGGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACGGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTC 416
Query 417 ATCACTAACGTTATCTCTTTGCCTTATATTCTGGTATTTCTATGTTGTTTACTAGCTGGG 476
||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 417 ATCACTAACGTCATCTCTTTGCCTTATATTCTGGTGTTTCTGTGTTGTTTGCTAGCTGGG 476
Query 477 CTAAGTATCTGTTGGTTTAACACAGTCTGCTTTGTGCTCTGTATCAGAAACTTTCCAGCA 536
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 477 CTAAGTATCTGTTGGTTCAACACAGTCTGCTTTGTGCTCTGCATCAGAAACTTCCCTGCA 536
Query 537 AACAGATCACTTGCACTTTCTCTCACAGTGAGCTTTAATGGCGTAAGTGCTGCTTTGTAC 596
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 537 AACAGATCACTTGCACTTTCTCTCACAGTGAGCTTTAATGGTGTAAGTGCTGCTTTATAC 596
Query 597 ACTCTTGCTTATAACGCAATCAATCCTGTTTCTACAGAACTATACCTACTCTTAAACGCT 656
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 597 ACTCTTGCTTACAACGCAATCAATCCTGTTTCTACAGAGCTATACCTACTCTTAAACGCT 656
Query 657 CTTGTACCTCTTTTTGTTTCATTCGCTGCTCTCATCCCTATTCTTCGCCAACCGCCTCTT 716
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 657 CTTGTACCTCTTTTTGTCTCATTTGCTGCACTCATCCCTATTCTTCGCCAACCGCCTCTT 716
Query 717 GAACCTCTTCCACCAGATGGAGTTCGAAGAGACTCTCTCATGTTTCTCTTGCTTAACATA 776
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 GAACCTCTTCCACCAGATGGAGTTCGAAGAGACTCTCTCATGTTTCTATTGCTTAACATA 776
Query 777 TTAGCGGTCTTGAATGGTGTTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACT 836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTAGCGGTCTTGAACGGTGTTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACT 836
Query 837 TCAGCTCGTCTTCTCTTTGGTGGATCATTACTTCTCTTGATTCTTCCTCTATGCCTTCCT 896
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 837 TCAGCTCGTCTTCTCTTTGGTGGATCAATACTTCTCTTGATTCTTCCTCTATGCCTCCCT 896
Query 897 GGTCTAGTCTATGCTCGTAATTGGTATCTACACAATATCCACTCCAGTTTCCGTCTAGAA 956
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 897 GGTCTAGTCTACGCTCGCAATTGGTATCTACACAACATCCACTCCAGCTTCCGTTTAGAA 956
Query 957 GGTTCTGGTTTTATTCTTGTTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACA 1016
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGTTCTGGTTTCATTCTTGTTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACA 1016
Query 1017 CGTGAAGCCAGCCTTGAAGGCTACCAGTTGCTAAACGATGATGTAGTGCGAGCTGTCAAT 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 CGTGAAGCCAGCCTTGAAGGCTACCAGTTGCTTAACGATGATGTAGTGCGAGCTGTCAAT 1076
Query 1077 ACTCCTGATCAGAAGAGTTTCATTGAAGATGACGACGGATGTTGTTGCACTAAGCTTATT 1136
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 1077 ACTCCTGATCAGAAGAGTTTCATTGAAGATGACGACGGATGTTGTTGCACAAAGGTCATT 1136
Query 1137 ACAAGAAATCAGCTTGGGATGCTTGG-AGAAGAACATCCTTTATCTTTACTCTTATGCAG 1195
||||||||||||||||| ||| |||| ||| ||||||||| ||||||| |||||||||||
Sbjct 1137 ACAAGAAATCAGCTTGGAATG-TTGGGAGAGGAACATCCTCTATCTTTCCTCTTATGCAG 1195
Query 1196 ATCAGATTTCTGGCTTTACTATATAGCCTACTTTTGCGGCGGCACGATTGGGCTGGTTTA 1255
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1196 ATCAGATTTCTGGCTTTACTATATAGCCTATTTTTGCGGCGGCACGATTGGACTGGTTTA 1255
Query 1256 TAGCAACAACCTGGGACAGATTGCACAATCTTTAGGACAAAGCTCAGAGACAACAACTCT 1315
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1256 CAGCAACAACCTGGGACAGATTGCACAATCTTTAGGACAAAGCTCTGAGACAACAACTCT 1315
Query 1316 TGTAACGCTTTATTCGTCTTTCTCATTCTTTGGTCGATTACTTTCAGCAACACCAGACTA 1375
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1316 TGTCACGCTTTATTCGTCTTTCTCATTCTTCGGTAGATTACTTTCAGCAACACCAGACTA 1375
Query 1376 TATCAGAGCGAAGGTTTATTTTGCTAGAACAGGGTGGCTAGCCGTTGCTCTTTTACCAAC 1435
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1376 TATCAGAGCGAAGGTTTATTTTGCTAGAACTGGGTGGCTAGCCGTTGCTCTTTTACCAAC 1435
Query 1436 CACAATTGCTCTTTTCTTGTTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAAC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CACAATTGCTCTTTTCTTGTTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAAC 1495
Query 1496 AGCTCTAATCGGTCTAAGCTCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGA 1555
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TGCTCTAATCGGTCTAAGTTCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGA 1555
Query 1556 GCTTTTTGGACCCAACAGCGTCGGGGTTAACCACAACATCCTCATCACAAACATACCGAT 1615
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GCTTTTTGGACCCAATAGCGTTGGGGTTAACCACAACATCCTCATCACAAACATACCGAT 1615
Query 1616 AGGATCATTGGTCTACGGTTTCTTAGCTGCTTTGGTCTATGAATCCCACAGTGTGGCTAG 1675
|||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 1616 AGGATCGTTGGTCTACGGTTTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGG 1675
Query 1676 GTCAAAGACCGAGTCAGTTATATGTATGGGACGAGACTGTTATCTCCTAACGTTTGTGTG 1735
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 1676 GTCAAAGACCGAGTCGGTTATATGTATGGGAAGAGACTGTTATCTCCAAACGTTTATGTG 1735
Query 1736 GTGGGGATGCTTGTCGGTGATTGGACTAGCTTCAAGTGTTGTTTTGTTTCTGAGAACTAG 1795
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1736 GTGGGGATGCTTGTCGGTGATTGGACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACCAG 1795
Query 1796 ACGAGCCTATCAACGTTTTGAACAAGATCGTATAACTTCGAGCATGCTCTATTCTTAGAA 1855
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
Sbjct 1796 ACGAGCCTATCAACGTTTTGAACAAGATCGGATAACTTCCAGCATGCTCTATTCTTAGTA 1855
Query 1856 TTTTCTCCAA 1865
||| ||||||
Sbjct 1856 TTTCCTCCAA 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92318802255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5