BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494460
Length=3564
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 3640 0.0
> AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18302147-18308303 REVERSE LENGTH=3696
Length=3696
Score = 3640 bits (1971), Expect = 0.0
Identities = 2376/2572 (92%), Gaps = 26/2572 (1%)
Strand=Plus/Plus
Query 1001 ACTGGATTAAGAAGGGGAGCAAGATCGTCATCACGACACGAGACAAGTCATTGACCGAGG 1060
||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 1022 ACTGGATTAAGAAGGGGAGCATGATCGTCATCACGACACGGGACAAGTCATTGACTGAGG 1081
Query 1061 GATTAGTCTCTGATCTCTATGAGGTCCCTGGGTTGAATGAGAGAGACGGCTTAGAGCTCT 1120
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1082 GATTAGTCACTGATCTTTATGAAGTCCCTGGGTTGAATGAGAGAGACGGCTTAGAGCTCT 1141
Query 1121 TTAGGGCTCAAGCCTGTTGTACTCTTGATGGAAATTTCATGGAGCTGTCTAGAAAGTTTG 1180
|||||||||||| |||||||| | |||| ||||||||||||||||| |||||||||||||
Sbjct 1142 TTAGGGCTCAAGTCTGTTGTAATATTGAAGGAAATTTCATGGAGCTATCTAGAAAGTTTG 1201
Query 1181 TGGATTATGCAGGAGGCAACCCATTAGCTCTCGAGCAATTTGGTAAGGAGCTTCGCGGGA 1240
|||||| |||| |||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 1202 TGGATTTTGCACGAGGCAACCCCTTAGCTCTCGAGGAATTCGGTAAGGAGCTTCGCGGGA 1261
Query 1241 AAGATGTGGTTCACTGGGAAACAAGACTTGGTACACTGGCACAGTGTTCCAATCCAACGA 1300
|||| | || ||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1262 AAGACGAGGCTCACTGGGAAACAAGACTTGGGACACTGGCACAGCATTCCAATCCAACGA 1321
Query 1301 TCAGAGAGAAGTTAAGAAGCTCTTATGATGAACTAAACGAGCAGCAGAAGGATGCGTTTC 1360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TCAGAGAGAAGCTAAGAAGCTCTTATGATGAACTAAACGAGCAGCAGAAGGATGCGTTTC 1381
Query 1361 TTGATATAGCTTACTTCTTTAGGTCACAAGATGAGAGCTACGTTAGAAGCTTACTTGATT 1420
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1382 TTGATATAGCTTATTTCTTTAGGTCACAAGATGAGAGCTACGTTAGAAGTTTACTTGATT 1441
Query 1421 CTTATGACCCTGAATCCGCGGAATCTGGACATGAATTTAGAGATCTCGCAGACAAATTCT 1480
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1442 CTTATGACCCTGAATCCGCGGAATCTGGTCAAGAATTTAGAGACCTCGCAGACAAATTCT 1501
Query 1481 TGATTGGCGTGTGTGATGGTCGAGTTGAGATGCATGATCTCTTGTTTACAATGGCCAAGG 1540
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1502 TGATTGGCGTGTGTGATGGTCGAGTTGAGATGCATGATCTATTATTTACAATGGCCAAGG 1561
Query 1541 AGCTTGTTGAAGCCACTGCAGATAAATCAAGACTGTTGCTGTCGAATTGTGCAGAGTTGA 1600
|| |||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 1562 AGATTGTTGAAGCTACTGCAGAGAAATCAAGATTGTTGCTGTCGAGTTGTGCAGAGTTGA 1621
Query 1601 GAAATAAAGAGTTGTCACTTGATCAACAGGGAAGAGACAAGGTTAGAGGAATTGTTTTAG 1660
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 AAAATAAAGAGTTGTCTCTTGATCAACAGGGAAGAGACAAGGTTAGAGGAATTGTTTTAG 1681
Query 1661 ACATGTCTAAAATGGACGAAACGCCATTAAAGAGAGAAGTTTTTGTCGGTATGAGTAGTC 1720
|||||||| ||||||| |||| ||| |||||||||| |||||||||||||||||| ||||
Sbjct 1682 ACATGTCTGAAATGGAGGAAAAGCCCTTAAAGAGAGCAGTTTTTGTCGGTATGAGCAGTC 1741
Query 1721 TACGGTACCTGAAAGTGTACAATTCTCTTTGTCCTCCTCACTCTGAAACTGAGTGCAAGT 1780
|||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 1742 TACGGTACCTGAAAGTCTACAGTTCTCTTTGTCCTACTCACTCTAAAACTGAGTGCAAGT 1801
Query 1781 TAAACTTACCTGATGGACTTGAGTTTCCAAAACATAATGCTGTCCGATATTTTCACTGGG 1840
|| ||||||||||||||||||| ||||||||| ||||| |||||||| | |||||||||
Sbjct 1802 TACACTTACCTGATGGACTTGAATTTCCAAAAGATAATATTGTCCGATGTCTTCACTGGG 1861
Query 1841 TGAAATTCCCAGGGACGGAACTTCCATAAGACTTTGACCCCAATAATCTCATCGATCTTA 1900
||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1862 TGAAATTTCCAGGGACAGAACTTCCACCAGACTTTTACCCCAATAATCTCATCGATCTTA 1921
Query 1901 AGTTACCTTACAGCAATATTATCACTGTATGGATTTGTACTAAGGTTGCACCTAATCTGA 1960
|||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||
Sbjct 1922 GGTTACCTTACAGCAATATTACCACTCTATGGAGCTGTACTAAGGTTGCACCTAATCTGA 1981
Query 1961 AGTGGGTTGATCTCAGCCACTCGAGTAACTTGAATTCTTTGATGGGTTTACT-AAAAGCA 2019
||||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||
Sbjct 1982 AGTGGGTTGATCTCAGCCACTCGAGTAACTTGAATTCCTTGATGGGTTTA-TCAGAAGCA 2040
Query 2020 CCAAATCTTTTGAGATTAAACCTTGAAGGCTGCACAAGTTTAAAGGAGTTACCTGATGAG 2079
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2041 CCAAATCTTTTGAGATTAAATCTTGAAGGCTGCACAAGTTTAAAGGAGTTACCTGATGAG 2100
Query 2080 ATGAAAGAGATGACAAATCTTGTTTTCCTGAACTTAAGAGGATGCACAAGCCTCTTGTCT 2139
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 ATGAAAGATATGACGAATCTTGTTTTCCTGAACTTAAGAGGATGCACAAGCCTCTTGTCT 2160
Query 2140 CTACCAAAGATCACTATGGATTCCCTCAAGACTCTGATTCTCAGTGGCTGCTCAAAATTA 2199
|||||||||||||||| | ||||| | |||||||| ||||| || |||||||||| ||
Sbjct 2161 CTACCAAAGATCACTACGAATTCCTTGAAGACTCTCATTCTTAGCGGCTGCTCAAGCTTT 2220
Query 2200 CAGACATTTGAGGTGATTTCGGAACGTCTAGAATCTCTATACTTAAACGGCACATCGATA 2259
|||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||
Sbjct 2221 CAGACATTTGAGGTGATTTCAGAACATCTAGAGTCTCTATACTTAAACGGCACAGAGATA 2280
Query 2260 AATGGACTTCCTCCAGCCATTGGTAATCTCCATAGACTTATCTTATTGAATTTGAAAGAT 2319
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2281 AATGGACTTCCTCCAGCCATTGGTAATCTCCATAGACTTATCTTTTTAAATTTGAAAGAT 2340
Query 2320 TGCAAAAATCTTGCAACTCTTCCTGATTGTCTTTGGGAGCTTAAATCTCTTCAAGAACTC 2379
||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2341 TGCAAAAATCTAGCGACTCTTCCTGATTGTCTTGGGGAGCTTAAATCTCTTCAAGAACTC 2400
Query 2380 AAACTCTCTCGCTGTTCAGAGCTCAAAATGTTT-CCTGATGTTAAGAAGAAAGTGGAAAG 2438
|||||||||||||| ||| |||||||||| ||| || ||||||| | |||| |||||||
Sbjct 2401 AAACTCTCTCGCTGCTCAAAGCTCAAAAT-TTTCCCCGATGTTACGGCGAAAATGGAAAG 2459
Query 2439 CTTGCGGGTTTTACTGCTTGATGGTACATCAATAACAGAGATGCCATGCAATATTTTTGA 2498
|||| |||||||||||| ||||| ||||||||| ||||| ||||||||| |||||| |
Sbjct 2460 TTTGCTGGTTTTACTGCTCGATGGGACATCAATAGCAGAGTTGCCATGCAGCATTTTTCA 2519
Query 2499 CTTTTCTT-TGCTACGACGCCTATGCTTAAGCAGAAATGATAATATCCGCACCCTTCGAT 2557
||| |||| | || ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2520 CTTATCTTCT-CTGCGACGTCTATGCTTAAGCAGGAATGATAATATCCGCACCCTTCGAT 2578
Query 2558 TTGACATGGGTCAAATGTTTCACCTGAAGTGGCTCGAGTTAAAGTGGTGTAAGAATCTCA 2617
||||||||||||| ||||| || ||||||||||| |||||||||| |||||||||||||
Sbjct 2579 TTGACATGGGTCACATGTTCCATCTGAAGTGGCTTGAGTTAAAGTATTGTAAGAATCTCA 2638
Query 2618 CATCTCTTCCCATACTTCCACCAAATCTTCAGTGCTTAAATGCACATGGCTGTACTTCCC 2677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2639 CATCTCTTCCCATACTTCCACCAAATCTTCAGTGCTTAAATGCACATGGCTGTACTTCAC 2698
Query 2678 TAAGAACAGTCGCCAGTCCGCAAACCCTTCCTACACCAACAGAGCAGATTCATTCCACCT 2737
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 TAAGAACAGTCGCCAGCCCGCAAACCCTTCCTACACCAACAGAGCAGATTCATTCCACCT 2758
Query 2738 TTATTTTCACTAACTGTCACGAACTAGAACAAGTCTCAAAGAATGCTATCATTTCTTATG 2797
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2759 TTATTTTCACTAACTGTCACGAACTAGAACAAGTCTCAAAGAATGCTATCATTTCTTACG 2818
Query 2798 TTCAGaaaaaaaGCAAGTTGATGTCAGCTGATCGATATAATCCAGATTTTGTTTTTAAAT 2857
|||||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 2819 TTCAGAAAAAAAGCAAATTGATGTCAGCTGATCGATATAGTCCGGATTTTGTTTACAAAT 2878
Query 2858 CCTTGATTGGTACTTGCTTTCCGGGATGTGAAATACCTGCATGGTTTAACCACCAATCAT 2917
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 2879 CCTTGATTGGTACTTGCTTTCCGGGATGTGAGATACCTGCATGGTTTAATCACCAAGCAC 2938
Query 2918 TGGGATCAGTCTTAA-CGCTGGAACTTCCTCAAGATTGGAATGCAGCTGGTAAAATAATA 2976
||||||||||||||| | |||||||||||||||| ||||||| || | || |||||
Sbjct 2939 TGGGATCAGTCTTAATC-CTGGAACTTCCTCAAGCTTGGAATTCAA--G-TAGGATAATC 2994
Query 2977 GGGATAGCTCTATGTGTTGTAGTCTCGTTTAAGGAGTACAGAGACCAAAACAACAGTCTC 3036
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 2995 GGGATAGCTCTATGTGTTGTAGTCTCGTTTAAGGAGTATAGAGACCAAAACAGCAGTCTC 3054
Query 3037 CAAGTGAAGTGCACTTGGGAGTTTACTAATGTATCATTGAGCCCCGAAAGTTTCATGGTT 3096
|||||| ||||||| || |||||||| |||||||| ||||||| ||||| |||||||||
Sbjct 3055 CAAGTGCAGTGCACGTGTGAGTTTACGAATGTATCCTTGAGCCAGGAAAGCTTCATGGTT 3114
Query 3097 GGTGGTTGGTCTGAACCAGGCGAGGAGACACATACGGTTGAGTCAGACCATACTTTCATT 3156
||||| |||||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 3115 GGTGGCTGGTCTGAACAAGGCGATGAGACACATACGGTTGAGTCAGACCATATTTTCATT 3174
Query 3157 GGCTACACCTCTTTGCTTACTATCAAGAACCGTCAACAGTTTCCATCAGCTACAGAAATT 3216
||||||||| ||||||||| ||| |||||||||||||||||||||| |||||| ||||||
Sbjct 3175 GGCTACACCACTTTGCTTAATATAAAGAACCGTCAACAGTTTCCATTAGCTACTGAAATT 3234
Query 3217 TCCCTTGGATTTCAAGTGACAAATGGTACAAGCGAGGTCGAAAAATGCAAGGTGATAAAG 3276
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3235 TCCCTTCGATTTCAAGTGACAAATGGTACAAGCGAGGTCGAAAAATGCAAGGTGATAAAG 3294
Query 3277 TGTGGCTTCTCTTTGGTGTATGAGCCTAATGAAGCTAATAACACATCTTGGAAGGAAACT 3336
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 3295 TGTGGCTTCTCTTTGGTGTATGAGCCTAATGAAGCTGATAGCACATCTTGGAAGGAAACT 3354
Query 3337 CCAAGGATGGAGGATAATAGACAAGACCGGAGAAGCTCTTTTAAAACTGGAGAAGGTGAT 3396
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3355 CCAAGGATGGAGGATAATAGACAAGACCGGAGAATCTCTTTTAAAACTGGAGAAGGTGAT 3414
Query 3397 GACTGCCCCAGTGCAACTCCAACAACAGCGGATTCTAATAAGGGGAATGGTTT-TCTCAG 3455
|||||||||| ||||||||||||||||||||||||||| ||||| ||| |||| | ||||
Sbjct 3415 GACTGCCCCATTGCAACTCCAACAACAGCGGATTCTAAGAAGGGCAATAGTTTGT-TCAG 3473
Query 3456 T-AGTTTCTGGAGAGACATA--TCTATTaaaaaaaaaGGAAGTTTGAAGATTGCAAACCA 3512
| | ||||||| |||| ||| ||||||| ||||||||| ||| |||||| | || ||
Sbjct 3474 TTACTTTCTGGGGAGAGATACATCTATTACAAAAAAAGGT--TTT-AAGATTCCGAAGCA 3530
Query 3513 GATTGACGTGGGTATGACTTATGAGGAAGTACATCCAAATGAAGTGTCAGAA 3564
||||||||||||||||| | | ||||||| ||||||||||| ||||||
Sbjct 3531 GATTGACGTGGGTATGA-----G-G-AAGTACAGCCAAATGAAGTTTCAGAA 3575
Score = 1319 bits (714), Expect = 0.0
Identities = 910/1004 (91%), Gaps = 15/1004 (1%)
Strand=Plus/Plus
Query 1 ATGGTGACAGCTTCGGACGTCAAAGTAGGACCAGAAGTGTTTATCAATTTCCGAGGAGTT 60
||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||| |
Sbjct 1 ATGGTGACATCTTCCGACGTCAAAGTAGAACCACAAGTGTTTATCAATTTCCGAGGAGAT 60
Query 61 GAGCTGCGCAAGACCTTCATCTCCCATCTCCATACAAGATTGCGACGGGATGGAATCAAT 120
||||| |||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||
Sbjct 61 GAGCTACGCAAGACCTTCATCTCCCATCTCCATAAAAGATTGCAACGCGATGGGATCAAT 120
Query 121 GCTTTTATAGATTCTGATGAAGCTCCTGGCAG-AGAACTCAAAAACCTTTTCAAAAGGAT 179
||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 121 GCTTTTATAGACTCTGATGAAGCTGTTGGC-GAAGAACTCAAAAACCTTTTCAAAAGGAT 179
Query 180 TGAGGATTCAAAGATCGCGCTGGCGGTTTTATCGAGTAGGTACACCGAGTCACATTGGTG 239
|||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 TGAGAATTCGGAGATCGCACTGGCGGTTTTATCGAGTAGGTACACGGAGTCACATTGGTG 239
Query 240 TTTGCAGGAGCTAGTTAAGATGATGGAATGTAGTCCGAAAGGTGAAGGATGCAATAACAA 299
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 240 TTTGCAGGAGCTAGTTAAGATGATGGAATGTAGTATGAAAGGTGAAGGATGCAATAAAAA 299
Query 300 GTTATTGGTCATTCCAATCTTCTACAAGCTGAAGATAT-CTACAGTGGCAGAGCTTGATG 358
||||||||||||||||| || ||||||||||||||| | || ||| |||||||||||
Sbjct 300 ATTATTGGTCATTCCAATTTTTTACAAGCTGAAGATAGAC-ACGGTGAAAGAGCTTGATG 358
Query 359 GAGATTTCGGTCGTAATTTGTGGGATCTCTGGAGGTTGCCTGGTCGCGGTCGTGATCGAG 418
||||||||||||||||| ||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 359 GAGATTTCGGTCGTAATCTGTGGGATCTCTGGAGGAAGCCGGGTTGCGGTCGTGATCGAG 418
Query 419 ACAACCGGATTGTTAAGTGGAACGAGGCTTTGCAGGA-TGTTCTCAGCAGAAACGCCTTG 477
||| |||||||||||||||||||||||||||| || | | ||||||||||||| ||||||
Sbjct 419 ACAGCCGGATTGTTAAGTGGAACGAGGCTTTGAAGTACT-TTCTCAGCAGAAATGCCTTG 477
Query 478 GTATTGCCAGAAACTGGCAAGGAAGACGATTTCTTGTCTACGATCGTCGCACATGTTAAA 537
||||| |||||||||| |||||||| || ||| |||||||||||| | |||||||||||
Sbjct 478 GTATTTTCAGAAACTGGAAAGGAAGAGGAATTCGTGTCTACGATCGCCACACATGTTAAA 537
Query 538 AATGCCCTAAGCCAAATTACACCGCAAAGAGGACAAAACCCTAAACCACAGAAAGGGGGA 597
|||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||| |
Sbjct 538 AATGCCCTAAGCAAAATTACGCCGCAAAGAGGAGAAAACCCGAAACCACAGAAAGG---A 594
Query 598 GGAGGAGGAGGAAACCCTAAGCCCCAAAAATTTCTTAGCAGAGCATCAAACATTACTGAA 657
| |||| | | |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 595 GCAGGA--A--A--CCCTAAGCCCCAAAAAATTCTTAGCAGAGCAGCAAACATTACTGAA 648
Query 658 CCAGAGGATCAACGCCTTAAGCAACTGGAAGTAAAGTTGAATGTGGAGTGCAATGACAAC 717
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 649 CCAGAGGATCAACGCCTTAAGCAACTAGCAGTAAAGTTGAATGTGGAGTGCAATGACAAC 708
Query 718 GAAACTCGTATTGTTGGAGTCGTCGGGATGCCTGGAATCGGAAAAACCTATCTCGCCAGG 777
|||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||| |
Sbjct 709 GAAACTCGTATTGTTGAAGTCGTAGGGATGCCCGGAATCGGCAAAACCTATCTCGCCAAG 768
Query 778 AAACTCTTCGTCAAGCTTAAGAAGAAGATCAACCATTGTGTGTTCATCGAGTTCGAGCGT 837
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 769 AAACTCTTCGCCAAGCTTAAGAAGAAGATCAACCATTGTGTGTTCATCGAGTTCAAGCGT 828
Query 838 GAGAAGTCAGAGGAGCAAGGATCAGAGTGGCTAGAGAAGAGGCTTGTGGAAAGTTTACTG 897
|||| ||||| |||||||||||||||||||||| ||||||| ||||||||| |||| |||
Sbjct 829 GAGATGTCAGCGGAGCAAGGATCAGAGTGGCTACAGAAGAGACTTGTGGAAGGTTTGCTG 888
Query 898 GATATTAAAAATTGCACTGATACAAATGCACTTGTGGTTTGGAAGGATAGCTTAATCAAC 957
|||||| || ||||||| |||||||||||||||| |||||||||||||||||||||| ||
Sbjct 889 GATATTCAAGATTGCACCGATACAAATGCACTTGAGGTTTGGAAGGATAGCTTAATCGAC 948
Query 958 AAGAAAGTCACGATTGTTTTAGATAACGTGAGTGAGAAGAAACA 1001
||||||||| ||||||||| ||| | |||||||| || |||||
Sbjct 949 AAGAAAGTCGTGATTGTTTTCGATGATGTGAGTGACAAAAAACA 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 177440477391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5