BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494461
Length=2090
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45190.2 | Symbols: | Cyclin family protein | chr5:18277620... 2625 0.0
AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein | chr4:1... 1110 0.0
> AT5G45190.2 | Symbols: | Cyclin family protein | chr5:18277620-18281874
REVERSE LENGTH=2150
Length=2150
Score = 2625 bits (1421), Expect = 0.0
Identities = 1617/1708 (95%), Gaps = 28/1708 (2%)
Strand=Plus/Plus
Query 397 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCACATGCA 516
Query 457 AAGAATGACAGAAGGACTATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 516
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AAGAATGACAGAAGGACCATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTGAGGAA 576
Query 517 ACTCCACGGCCCTTGAAAGACGTTATTTTTGTCTCCTATGAGATAATAAACAAGAAGGAT 576
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 577 ACTCCACGGCCCTTGAAAGATGTTATTTTTGTCTCCTATGAGATTATAAACAAGAAGGAT 636
Query 577 CCTGGTGCTTCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 636
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CCTGGTGCTTCCCAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAGCTTATA 696
Query 637 TTAAACGGAGAAAAAATTGTTCTTTCTACTTTAGGCTTTGACCTCAATGTTCATCATCCT 696
|||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 697 TTAAACGGAGAAAAAATTGTTCTTTCCACTCTAGGCTTTGACCTCAATGTTTATCATCCT 756
Query 697 TATAAACCCCTTGTAGAAGCTATAAAGAAATTTAAGGTTGCACAGAATGCTCTCGCCCAA 756
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 757 TATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAA 816
Query 757 GTTGCATGGAATTTTGTTAATGATGGTCTTCGGACATCTCTCTGCCTGCAATTTAAGCCT 816
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 817 GTTGCATGGAATTTTGTTAATGATGGTCTACGGACATCTCTCTGCCTGCAATTTAAGCCT 876
Query 817 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCA 936
Query 877 TCAGATGGGGAGAAGGTTTGGTGGCAAGAATTTGACGTCACACCCCGACAATTGGAGGAT 936
|||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 937 TCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACCCAGACAACTGGAGGAT 996
Query 937 GTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAACCGTGTCCCTGCATCTCAAGGAAGC 996
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 997 GTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAATCGTGTCCCTGCATCTCAAGGAAGT 1056
Query 997 GAAGTCGAAAGTAGTGTAGGTGGAGGGTCAGTTCAGCGGCCAGGCTCCAGAAATGCAGTT 1056
|||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct 1057 GAAGTCGAGAGTAGTGTAGGTGGAGGGTCAGCTCAGCGACCAGGCTCCAGAAATGCGGTT 1116
Query 1057 TCAACCGATGAGCATGTTGGTTCTAGGCAAAC---ATCAGTACGTTCAACCCATGAA-AA 1112
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1117 TCAACCGATGAGCATGTTGGTTCTAGGCAAACGTCATCAGTACGTTCAACCCATGAACAA 1176
Query 1113 TTCAAATTCTGATAATCAT-----T-CATCGAAAGGAGTATTGAATCAGAACAATGAAAA 1166
| ||||||||||||||||| | |||| |||||||||||||||||||||||||| ||
Sbjct 1177 T-CAAATTCTGATAATCATGGGGGTTCATCCAAAGGAGTATTGAATCAGAACAATGAGAA 1235
Query 1167 TGGGGCTGGTGAGGCAGCTAATGTCAGTGTCGATCACAAAGAGGAGATAGAGAGAGAAAC 1226
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1236 TGGGGGTGGTGAGGCAGCTAATGTCAGTGTCGATAACAAAGAGGAGATAGAGAGAGAAAC 1295
Query 1227 AAAAGAAAGCAGCCTACATCCTGAAAGTCATCCACCCCATAAGGACAATGTAAGAGAAGC 1286
|||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||||
Sbjct 1296 AAAAGAAAGCAGCCTACATCTTGAAAGCCATCCAGCCCATAAGGACAATGTGAGAGAAGC 1355
Query 1287 CCCCCATAACTCTAGACCTTTAGTTGAGGGACCTGCGAAAGACAACTCAGAAAGAGAGGG 1346
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1356 CCCCCATAACTCTAGACCTTTAGTTGAGGGACCTGGGAAAGACAACTCAGAAAGAGAGGG 1415
Query 1347 TGGAGAGATTCAAGATGATGGTGCTGTTCATAAATCTAGAAATGTTGATGTGGGTGATGC 1406
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1416 TGGAGAGCTACAAGATGATGGTGCTGTTCATAAATCTCGAAATGTTGATGTGGGTGATGC 1475
Query 1407 CCCAATCAGCCAATCGCCAAAAGACTTAAAATTGCTTCGAGATAAGGTGAAGGCTAAACG 1466
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1476 CCTAATCAGCCAATCGCCAAAAGATTTGAAATTGCTTCGAGATAAGGTGAAGGCTAAACG 1535
Query 1467 AGAGAAAGCTAAAAAGTTACTAGGTGAAAGGACGAGGAAAAAGGATTTGATGGATGAGGA 1526
|||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1536 AGAGAAAGCTAAGAAGTTGCTAGGTGAAAGAACGAGGAAAAAGGATTTGATGGATGAGGA 1595
Query 1527 TGATTTGATTGAAAGAGAATTGGAGGATGTGGAACTAGCAGTTGAGGATGAAAAGACGAA 1586
||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||
Sbjct 1596 TGATTTGATTGAAAGAGAACTGGAAGATGTGCAACTAGCTGTTGAGGATGAAAAGACGAA 1655
Query 1587 GGAAAGGAAAGTAGAGAGCAGGCCAAAAGCCGAGAACTCTGATCTCATGGGTACAGAACA 1646
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1656 GGAAAGGAAAGTACAGAGCAGGCCAAAGGCGGAGAACTCTGATCTCATGGGTACAGAACA 1715
Query 1647 TGGTGAGATTCTAGATGTTAAAGGAGAAGTCAAAAATACAGAGGAAGGCGAAATGGTAAA 1706
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1716 TGGTGAGATTTTAGATGTTAAAGGAGAAGTCAAAAATACAGAGGAAGGTGAAATGGTAAA 1775
Query 1707 CGA---TGTGTCCCCAATGATGCATAGCAGAAAGAGAAAAATGGGAAGCCCTCCTGAAAA 1763
| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 CAACAATGTGTCCCCGATGATGCATAGCAGAAAGAGAAAAATGGGAAGCCCTCCTGAAAA 1835
Query 1764 GCAGTCAGAAGGAAAGAGACGCCACAATAGTGAGAATGGTGAAGAAGGCCACCACAACAA 1823
||||||||||||||||||||||||||||||||||||||| |||||| |||| | | |
Sbjct 1836 GCAGTCAGAAGGAAAGAGACGCCACAATAGTGAGAATGGGGAAGAAAGCCAT-A-AG-A- 1891
Query 1824 AACGAGCAGAGGTAGTAGTCATCATGGTGATAGAGAGCACAGAAGACACTCACAAGAGAA 1883
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 --CGAGCAGAGGTAGTAGCCATCATGGTGATAGAGAGCACAGAAGACACTCACAAGAGAA 1949
Query 1884 TAACCATTCATAAGAAGAGGTAATGATTATTAAAACTGCTACTCTTTATATTCCATCTTA 1943
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1950 TAACCATTCATAAGA-GAGGTAATGATTATTAAAACTGCTACTCTTTGTATTCCATCTAA 2008
Query 1944 -TGGTCTTTTTAATAAAGACCTTTGGCACTTTGATGCCCCAACCATGTGAACTTGACTTC 2002
|||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2009 ATGGTCTTTTTAA-AA-GACCTTTGGCACTTCGATGCCC-AACCATGTGAACTTGACTTC 2065
Query 2003 TGCATGGGTCGGTTCAGTCGTTGGAACCAATGCTCAGTGTATTTTATGTTGATTATATAT 2062
| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2066 TACATGGGTCGGTTCAGTCGTTGGAACCA-TGCTCTCTGTATTTTATGTTGATTATATAT 2124
Query 2063 CTCTATTTGTGGCATTTTTGCACAATCC 2090
|| ||| ||||||||||||||||||||
Sbjct 2125 CT--ATTCGTGGCATTTTTGCACAATCC 2150
Score = 586 bits (317), Expect = 3e-166
Identities = 345/359 (96%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 29 TTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGAATTTCACGCGTTATTCTTCTTCGTCTT 88
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 56 TTCTCGCGACTCTCTAGGGTTAGGGTTTGTTGATTTTCACGCGTTATTCTTCATCTTCTT 115
Query 89 CTACAATTCGCGACTAGAGAAGTTAATTCCATTGAAGGTAAGGTTGGGATAGTTTTTGGT 148
|| |||||||| |||||||||| |||||||||||||| |||||| |||||| ||||||||
Sbjct 116 CTGCAATTCGCAACTAGAGAAGCTAATTCCATTGAAGTTAAGGTGGGGATAATTTTTGGT 175
Query 149 TTTAGGAGATACTAATGGCTGGAGTACTAGCTGGGGAATGTTCTTACAGTGAGAGTGGAG 208
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTTAGAAGATACTAATGGCTGGAGTACTAGCTGGGGAATGTTCTTACAGTGAGAGTGGAG 235
Query 209 TTTCATCACACTCGAGGAATTCTCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 268
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 236 TTTCATCACACTCAAGGAATTCCCATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTG 295
Query 269 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAAGAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGG 355
Query 329 AAACGTACCTCCGCAAATCCTACTGTACGTTTTTGCAGGACTTGGGCATGAGATTGAAA 387
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 356 AAACATACCTCCGCAAATCCTACTGTACATTTTTGCAGGACTTGGGCATGAGATTGAAA 414
> AT4G19600.1 | Symbols: CYCT1;4 | Cyclin family protein | chr4:10672765-10676735
FORWARD LENGTH=2039
Length=2039
Score = 1110 bits (601), Expect = 0.0
Identities = 789/881 (90%), Gaps = 8/881 (1%)
Strand=Plus/Plus
Query 155 AGATA-CTAATGGCTGGAGTACTAGCTGGGGAATGTTC-TTACAGTGAGAGTGGAGTTTC 212
||||| | ||||||||||||| |||||||||| ||||| || | |||||||||| |||||
Sbjct 203 AGATAGC-AATGGCTGGAGTATTAGCTGGGGATTGTTCATT-CGGTGAGAGTGGTGTTTC 260
Query 213 ATCACACTCGAGGAATTCTC-ATGAAAAGCAAGAAGAGGTTTCCCGCTGGTATTTTGGAA 271
||| |||| |||||||| | |||||||||| || |||||| ||||||||||||||||||
Sbjct 261 ATCTTACTCCAGGAATTC-CAATGAAAAGCAGGACGAGGTTGCCCGCTGGTATTTTGGAA 319
Query 272 GAAAAGAAATAGAAGAGAATTCACCGTCAAGGTTGGATGGTATTGACTTAAAGAAGGAAA 331
|||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 320 GAAAAGAAATTGAAGAAAATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAA 379
Query 332 CGTACCTCCGCAAATCCTACTGTACGTTTTTGCAGGACTTGGGCATGAGATTGAAAGTTC 391
| ||||||||||| || |||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 380 CATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTTC 439
Query 392 CCCAGGTTACAATAGCTACAGCGATAATCTTCTGTCATCGATTCTTCTTTCGCCAATCAC 451
| ||||||||||||||||| || || ||||||||||||||||||||| ||||||| ||||
Sbjct 440 CTCAGGTTACAATAGCTACCGCAATTATCTTCTGTCATCGATTCTTCATTCGCCAGTCAC 499
Query 452 ATGCAAAGAATGACAGAAGGACTATTGCAACTGTATGCATGTTCCTTGCTGGAAAGGTTG 511
|||| | ||||||||||||||| ||||| || || |||||||||||||| ||||| || |
Sbjct 500 ATGCTAGGAATGACAGAAGGACGATTGCTACAGTCTGCATGTTCCTTGCGGGAAAAGTGG 559
Query 512 AGGAAACTCC-ACGGCCCTTGAAAGACGTTATTTTTGTCTCCTATGAGATAATAAACAAG 570
| |||||||| | |||| || ||||| |||||| |||||||||||||||||||| |||||
Sbjct 560 AAGAAACTCCTA-GGCCGTTAAAAGATGTTATTGTTGTCTCCTATGAGATAATACACAAG 618
Query 571 AAGGATCCTGGTGCTTCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 630
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 AAGGATCCTACTACTGCACAGAAAATCAAGCAAAAGGAAGTATATGAGCAACAAAAAGAG 678
Query 631 CTTATATTAAACGGAGAAAAAATTGTTCTTTCTACTTTAGGCTTTGACCTCAATGTTCAT 690
|||||| |||| |||||||| ||||| |||||||| | || |||||| |||||||| ||
Sbjct 679 CTTATACTAAATGGAGAAAAGATTGTACTTTCTACGCTGGGATTTGACTTCAATGTTTAT 738
Query 691 CATCCTTATAAACCCCTTGTAGAAGCTATAAAGAAATTTAAGGTTGCACAGAATGCTCTC 750
||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 739 CATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAAATTTAAGGTCGCACAGAATGCTCTG 798
Query 751 GCCCAAGTTGCATGGAATTTTGTTAATGATGGTCTTCGGACATCTCTCTGCCTGCAATTT 810
|||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct 799 GCCCAAGTTGCATGGAATTTTGTTAACGATGGTCTGCGGACGTCACTCTGCCTGCAATTT 858
Query 811 AAGCCTCATCATATTGCGGCTGGTGCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAG 870
|||||||| || |||||||| || ||||| |||||||| || |||||||||||||||||
Sbjct 859 AAGCCTCACCACATTGCGGCGGGAGCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAA 918
Query 871 TTACCATCAGATGGGGAGAAGGTTTGGTGGCAAGAATTTGACGTCACACCCCGACAATTG 930
|||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| |
Sbjct 919 TTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGAATTTGATGTCACACCTCGACAACTA 978
Query 931 GAGGATGTTAGCAACCAAATGCTTGAGCTTTATGAGCAAAACCGTGTCCCTGCATCTCAA 990
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 979 GAGGATGTTAGCAACCAAATGCTTGAGCTCTATGAGCAAAACCGTGTTCCTGCATCTCAA 1038
Query 991 GGAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGGTCAGTTCA 1031
| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1039 GTAAGCGAAGTCGAAAGTAGTGTAGGTGGAGGATCAGCTCA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103613924880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5