BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494462
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45170.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 2069 0.0
> AT5G45170.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:18270344-18273187 REVERSE
LENGTH=1388
Length=1388
Score = 2069 bits (1120), Expect = 0.0
Identities = 1251/1316 (95%), Gaps = 2/1316 (0%)
Strand=Plus/Plus
Query 2 AGCCATGGAAATCGCTTCTTGTTCGATTCTTGACAATCTTCAACTTTCTTGTACAAAGAC 61
|||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 55 AGCCATGGAAATCGCTTCTTGTTCAATTCTTAACAATCTTCAAATTTCTTGTACAAAGAC 114
Query 62 TTCTCTTTTCACTCAATACTTGAGCGAGCGGTCTTCACACGACACTGGAAGATGCAATTT 121
|||| |||||||||| || ||||||||||| ||||||||||||||||||||| |||||||
Sbjct 115 TTCTATTTTCACTCAGTATTTGAGCGAGCGTTCTTCACACGACACTGGAAGACGCAATTT 174
Query 122 CTTGTCTTTTTCCAATTTCCCTGGAAAATCTCAGATTCTCGGAAAATGCTTGCGATTGCG 181
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CTTGCCTTTTTCAAATTTCCCTGGAAAATCTCAGATTCTCGGAAAATGCTTGCGATTGCA 234
Query 182 GAGATTCTCTTCGATTTGCTTATCAGCGAGCCGAGAAGACGTAAACCCATCCGAAGAACT 241
||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |
Sbjct 235 GAGATTCTCTTCGATTTGCTTATCAGCTAGCAGAGAAGACGTAAACCCATCTGAAGAATT 294
Query 242 CGCTGTGATACTTGAAGTTGATGGGGTTATGATTGATACATGGTCAAGTAATCGCCAAGC 301
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 295 CGCTGTGATACTTGAGGTTGATAGGGTTATGATTGATACATGGTCAAGTAATCGCCAAGC 354
Query 302 GTTCAATGTAGCTTTTCAAAAGATTGGGCTTGACTGTGCAAATTGGCCTGAACCAGTTTA 361
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 355 GTTCAATGTAGCTTTTCAAAAGCTTGGGCTAGATTGTGCAAATTGGCCTGAACCAGTTTA 414
Query 362 TTCCGACCTGTTGAGAAAGGGTGCGGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAA 421
||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 415 TTCAGACTTGTTGAGAAAAGGTGCTGCTGATGAAGAGAAAATGTTGCTTTTGTATTTCAA 474
Query 422 CCAAATTGGCTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAAAGTGT 481
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 475 CCAGATTGGTTGGCCTTCGTCGTTGCCAACCAGTGAGAAAGCAAGTTTTGTAAAGAGTGT 534
Query 482 ATTGCGAGAAAAGAAAAATGCAATGGATGAGTTTTTGATGTCGAAAAGCTTACCTCTGAG 541
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 535 ATTGCGAGAAAAGAAAAATGCAATGGATGAGTTTCTCATATCGAAAAGCTTACCTCTGAG 594
Query 542 ATCTGGAGTCCAAGAGTTTATCGATAATGCATACACGGAGAGAGTGCCTGTTGCTATCGT 601
||||||||| ||||| |||||||||||||||||| |||||| ||| || |||||||||||
Sbjct 595 ATCTGGAGTGCAAGAATTTATCGATAATGCATACGCGGAGAAAGTACCGGTTGCTATCGT 654
Query 602 AACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCTATCCGTAGTCGAGATGCTTGGCCA 661
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 655 AACAGCCTACTGCAAGAGTGGAGACAAAGTAGCCCTATCCATTGTCGAGATGCTTGGGCA 714
Query 662 AGAAAGTCTTCCAAATGTGAAGGTTATCGGAGACAGTGAGGTAGAACAGAGTATGTATGG 721
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 715 AGAAAGACTTCCAAATGTGAAGGTTATCGGAGACAATGAGGTAGAACAGAGTATGTATGG 774
Query 722 ACAACTTGTTTTTGGTAAAGGAGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGT 781
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ACAACTTGTTCTTGGGAAAGGAGTTTCTTCAAGTCTAGAGGAGCAACTAGTGAAGGAAGT 834
Query 782 CAAAAAAGCAGCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCGATGCTAAA 841
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 835 AAAAAAAGCAGCGTCCGCTGAGAAACAGAGGATAGCAGAAGAAGTTGCATCAATGCTAAA 894
Query 842 GCTAAGTGTTGATATTGACACAACCTCATCTGAGAGATTGGAAAAGATTGTTGTTGCATT 901
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCTTAGTGTTGATATTGACACAACCTCATCTGAGAGATTGGAAAAGATTGTTGTTGCATT 954
Query 902 GCGTGCTGCTGCGGAACACATAGGAGTACCTGTAAAAAACTGTGTACTTGTTGCTGGTAG 961
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 955 GCGTGCTGCTGCGGAACACATAGGATTACCTGTAAATAACTGTGTACTTGTTGCTGGTAG 1014
Query 962 TCAACCTGGAGTTTCTGCTGCAAAGATGATAGGCATGCCGTGTGTAGTCATGCGAAGCAG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TCAACCTGGAGTTTCTGCTGCAAAGATGATAGGCATGCCGTGTGTAGTCATGCGAAGCAG 1074
Query 1022 TTTAACAGCAAGAGGTGAGTTTCCATCGGCAAAAGGTGTAATGGATGGGTTTGGAGGTGC 1081
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1075 TTTAACGGCAAGAGGTGAGTTTCCATCGGCCAAAGGTGTAATGGATGGGTTTGGAGGTGC 1134
Query 1082 AGACCTAACAATCCCAAAACTTAGGCACAAGATTGAGTCTTGAAGAAACAATTCAAGAAA 1141
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1135 AGACCTAACAATCCCAAAACTTAGGAACAAGATCAAGTCTTGAAGAAACAATTCAAGAAA 1194
Query 1142 GTTGTCTAAAAATCAGAATCTGGAAATACTGTCGAGTTATTTGCTCACTTCTTGAAGTTT 1201
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1195 GTTGTCTAAAAATCAGAATCTGGAAATACTGTCGAGTTATT-GTTCACTTCTCGAAGTTC 1253
Query 1202 TTGTGAAGTTTTCGACTTGATATATGT-AACTATAGCTACATGTTGTACAACTTGATTCT 1260
||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 1254 TTGTGAAGTTTTCGACTTGATATATATTAACTATAGCTACGTGTTGTACAACTTGATTCT 1313
Query 1261 TTATAATGAACTGGTGTGGTTAGTTTTCAAACATCAGCAAACCTTTACTCAATACT 1316
|| ||||||| ||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct 1314 TTGTAATGAATTGGTGTGGTTAATTTTCAGACATCAACAAACCTTTACTCAATACT 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5