BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494463
Length=2782
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45160.1 | Symbols: | Root hair defective 3 GTP-binding pro... 4283 0.0
AT1G72960.1 | Symbols: | Root hair defective 3 GTP-binding pro... 427 2e-118
> AT5G45160.1 | Symbols: | Root hair defective 3 GTP-binding protein
(RHD3) | chr5:18264717-18270283 FORWARD LENGTH=2903
Length=2903
Score = 4283 bits (2319), Expect = 0.0
Identities = 2552/2664 (96%), Gaps = 18/2664 (1%)
Strand=Plus/Plus
Query 105 GATCCGTTCGAAGTCGAATTTCGT-T-AAATAGACATGGGGGAAAACGATGATGGTTGCT 162
|||||| | ||||||||||||||| | ||||||| |||||||||||||||||||||||||
Sbjct 117 GATCCG-TGGAAGTCGAATTTCGTGTAAAATAGAGATGGGGGAAAACGATGATGGTTGCT 175
Query 163 CGACTCAGCTAATCGATGGGAATGGTGAATTTAACGTTAAGGGTTTGGATAATTTCGTGA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CGACTCAGCTAATCGATGGGAATGGTGAATTTAACGTTAAGGGTTTGGATAATTTCGTGA 235
Query 223 AAAAGACCAAGCTTTCTGATTGTGGTCTTTCTTATGCTGTTGTTGCAATCATGGGTCCTC 282
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 AAAAGACGAAGCTTTCTGATTGTGGTCTTTCTTATGCTGTTGTTGCAATCATGGGTCCTC 295
Query 283 AAAGTAGTGGGAAGAGTACACTTTTGAATCAT-TTGTTTAAAACCAGTTTTAGGGAAATG 341
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 296 AAAGTAGTGGGAAGAGTACACTTTTGAATCATCTT-TTTAAAACCAGTTTTCGGGAAATG 354
Query 342 GATGCTTTTGCGGGAAGGAGTCAAACAACTAAAGGTATTTGGATGGCTAGGTGTGTTGGT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GATGCTTTTGCGGGAAGGAGTCAAACAACTAAAGGTATTTGGATGGCTAGGTGTGTTGGT 414
Query 402 ATTGAGCCTTTCACAATTGCTATGGATTTGGAGGGTACTGATGGGAGAGAAAGAGGCGAG 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATTGAGCCTTTCACAATTGCTATGGATTTGGAGGGTACTGATGGGAGAGAAAGAGGCGAG 474
Query 462 GATGACACCACATTTGAGAGACAAAGTGCCCTGTTTGCTATCGCTGTTGCCGATATTGTA 521
|||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GATGACACTACATTTGAGAAACAAAGTGCCCTGTTTGCTATAGCTGTTGCCGATATTGTA 534
Query 522 CTGATAAACATGTGGTGCCATGACATTGGAAGGGAACAGGCGGCCAACAAACCATTACTA 581
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 535 CTGATAAACATGTGGTGCCATGACATTGGAAGGGAACAGGCTGCCAACAAACCATTGCTA 594
Query 582 AAGACAGTTTTCCAGGTCATGCTGCGGTTGTTTAGCCCTCGAAAAACAACTCTTCTTTTT 641
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 595 AAGACAGTTTTCCAGGTCATGCTGCGATTGTTTAGCCCTCGTAAAACAACTCTTCTTTTT 654
Query 642 GTCATACGTGATAAAACAAAGACTCCGATAGAGCTGCTTGAACGTGCTCTAAGAGAAGAT 701
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 655 GTCATACGTGATAAAACAAAGACTCCAATAGAGCTGCTTGAACGTGCTCTAAGAGAAGAT 714
Query 702 ATTCAGAAGATATGGGATTTAGTTCGCAAGCCTGAAGCACACAAAAATACACCTCTAAAT 761
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTCAGAAGATATGGGATTCAGTTCGCAAGCCTGAAGCACACAAAAATACACCTCTAAAT 774
Query 762 GAATTCTTCAATGTAATGATTGTTGCATTATCCAGCTATGAAGAGAAAGAAAAACAGTTT 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAATTCTTCAATGTAATGATTGTTGCATTATCCAGCTATGAAGAGAAAGAAAAACAGTTT 834
Query 822 AAGCAAGAGGTTGCTGAGTTGAGGCAGAGGTTTTTCCATTCCATTTCACCTGGGGGACTT 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GAGCAAGAGGTTGCTGAGTTGAGGCAGAGGTTTTTCCATTCCATTTCACCTGGGGGACTT 894
Query 882 GCTGGTGATAGACGTGGTGTAGTTCCTGCTTCAGGATTTTCTTTCAGCTCCCAGCAGATT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCTGGTGATAGACGTGGTGTAGTTCCTGCTTCAGGATTTTCTTTCAGCTCCCAGCAGATT 954
Query 942 TGGAAAGTTATAAAAGAGAATAGAGACTTGGACCTTCCTGCTCACAAGGTAATGGTTGCC 1001
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 955 TGGAAAGTTATAAAAGAGAATAGAGATTTGGACCTTCCTGCTCACAAGGTAATGGTTGCC 1014
Query 1002 ACTGTTCGGTGTGAAGAGATAGCCAATGAGAAGCTACGCGACTTGGCAACCAATGAGAGT 1061
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1015 ACTGTTCGGTGTGAAGAGATAGCCAATGAGAAGCTGCGCGACTTGGCAACCAATGAGAGT 1074
Query 1062 TGGTTGGAGTTGCATGAAGCCG-TAGAAGGTGGTCTAGTTCCTGGTTTTGGCAAAAAGCT 1120
||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1075 TGGTTAGAGTTGCATGAAGCCGCT-GAAGGTGGTCTAGTTCCTGGTTTTGGCAAAAAGCT 1133
Query 1121 TAGCTCTATCCTTGAAAAATACTTCTCAGAATATGACGCAGAGGCAATATACTTCGATGA 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1134 TAGCTCTATCCTTGAAAAATACTTCTCAGAATATGACGCAGAGGCAATATACTTTGATGA 1193
Query 1181 AGGAGTAAGAAAAGAGAAGCGTCTACAGCTGAAACTTAAAGCTTTGGATTTCGTGCACAC 1240
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1194 AGGAGTAAGAAAAGAGAAGCGTCTACAGCTGAAACTTAATGCTTTGGATTTCGTATACCC 1253
Query 1241 TGCTTATGCTACCATGCTGGGACATCTACGGTCCAATGCACTGGAATCCTTTAAGATCCA 1300
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTCTTATGCTACCATGTTGGGACATCTACGGTCCAATGCACTGGAATCCTTTAAGATCCG 1313
Query 1301 ACTGGAACAGTCTCTAAATCAAGGAGAAGGATTCGCAAAAGCTGTGCGGGACTCCCAACA 1360
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1314 ACTGGAACAGTCCCTAAATCAAGGTGAAGGATTCGCAAAAGCTGTGCGAGACTCCCAACA 1373
Query 1361 GTATTGTCTGATTGTGTTTGACAAAGGATGTGAAGATGCTAAGGTTAAACAAGCGACTTG 1420
|| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1374 GTCTTGTCTGATGGTGTTTGACAAAGGATGTGAAGATGCTGCGGTTAAACAAGCAACTTG 1433
Query 1421 GGATGCATCAAAAATCAGAGAGAAACTTTGTCGTGACATTGATGCTCACACATCTTCTGC 1480
|||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 1434 GGATGCATCAAAAATCAGGGAGAAACTTTGTCGTGACATTGATGCTCACACATTTTTTGC 1493
Query 1481 TCGGACTGCTAAACTATCTGAATTAACTGCCAACTATGAGAAACGGCTAACTCAAGCACT 1540
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TAGGAGTGCTAAACTATCTGAATTAACTGCCAACTATGAGAAACGGCTAACTCAAGCACT 1553
Query 1541 TAGTGAACCTGTTGAGTCTTTGTTCGAAGCTGGTGGAAAAGAGACGTGGCCTTCCATAAG 1600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1554 TAGTGAACCTGTTGAGTCTTTGTTCGAAGCTGGTGGAAAAGAGACCTGGCCTTCCATAAG 1613
Query 1601 GAAGCTTCTCAAACGCGAGACTGAAACAGCTGTTACAGATTTTCTGGATGTGGTTACTGG 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GAAGCTTCTCAAACGCGAGACTGAAACAGCTGTTACAGATTTTCTGGATGTGGTTACTGG 1673
Query 1661 TTTTGAGCTAGATCACGATAAAATTGATGCTATGGTTCAGAATCTAAAGGACTATTCTCA 1720
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1674 TTTTGAGCTAGATCACGCTAAAATTGATGCTATGGTTCAGAATCTAAAGAACTATTCTCA 1733
Query 1721 GAGTTTAGTGGAGAAAAAAGCAAGAGAAGAAGCTGCTAAAATTTTAATCCGAATGAAAGA 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 GAGTTTAGTGGAGAAAAAAGCAAGAGAAGAAGCTGCTAAAATTTTAATCCGAATGAAAGA 1793
Query 1781 TAGGTTCTCAACAGTCTTCAGTCATGACAAAGACTCAATGCCACGGGTCTGGACTGGAAA 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 TAGGTTCTCAACAGTCTTCAGTCATGACAAAGACTCAATGCCACGGGTCTGGACTGGAAA 1853
Query 1841 AGAGGATATTAGAGCAATCACAAAAGATGCTCGAGCAGAGGCTTTAAGTCTTTTATCTGT 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 AGAGGATATTAGAGCAATCACAAAAGATGCTCGAGCAGAGGCTTTAAGTCTTTTATCTGT 1913
Query 1901 GATGGCTGCAATACGTTTGGATGAAAGACCCGACAATATTGAGAGTACTCTTTTCTCTTC 1960
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1914 GATGACTGCAATACGTTTGGATGAAAGACCAGACAATATTGAGAGTACTCTTTTCTCTTC 1973
Query 1961 TCTCATGGATGGAACTGTATCAGTCT-CATCTTCCCACAACAGAAGCTTAGGAACTTCCA 2019
||| |||||||||||||| || | || |||||||||||||||||||| ||||||| || |
Sbjct 1974 TCTAATGGATGGAACTGTTTCTG-CTGCATCTTCCCACAACAGAAGCGTAGGAACGTCTA 2032
Query 2020 CGGATCCACTTGCATCTAGCTCATGGGAAGAGGTTCCTCCAAAAAACGTGTTACTGACGC 2079
| |||||||||||||||||||| |||||||||||||||||||| || | |||||||||
Sbjct 2033 CAGATCCACTTGCATCTAGCTCTTGGGAAGAGGTTCCTCCAAATAATATACTACTGACGC 2092
Query 2080 CAGTACAGTGTAAGTCACTGTGGAGACAGTTTAAATCTGAGACAGAGTATTCTGTAACCC 2139
|||| |||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct 2093 CAGTGCAGTGTAAGTCACTGTGGAGACAGTTCAAATCTGAGACCGAGTATACTGTAACCC 2152
Query 2140 AAGCTATTTCGGCACAGGAGGCTCACAAGCGAAATAATAACTGGCTTCCACCGGCTTGGG 2199
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2153 AAGCTATTTCGGCACAGGAGGCTCACAAGCGAAATAACAACTGGCTTCCACCGGCTTGGG 2212
Query 2200 CAATTGTGTTGATGATTGTCCTTGGTTTCAATGAATTCATGATGCTTTTGAAGAATCCTT 2259
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CGATCGTGTTGATGATTGTCCTTGGTTTCAATGAATTCATGATGCTTTTGAAGAATCCTT 2272
Query 2260 TGTACCTCTTGGGTTTCTTCGTGGCGTTTTTACTCTCCAAAGCCTTATGGGTGCAGCTTG 2319
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 TGTACCTTTTGGGTTTCTTCGTGGCGTTTTTACTCTCCAAAGCCTTATGGGTGCAGCTTG 2332
Query 2320 ACATTCCGAGGGAATTTCAACACGGCGCAGTTGCTGGAGTACTCTCCATCACGTCAAAGT 2379
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 2333 ACATTCCGAGGGAATTTCAACATGGCGCAGTTGCTGGAGTACTGTCCATCACGTCGAAGT 2392
Query 2380 TCCTTCCAACTGTTATGAATCTTCTAAGAAAGCTTGCGGAAGAAGCGCAAGGAAAAACAA 2439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 TTCTTCCAACTGTTATGAATCTTCTAAGAAAGCTTGCGGAAGAAGCGCAAGGAAAAACAA 2452
Query 2440 CTCAGGAAGGTGAATACT---CAGCTTCCCAAAGCTACAGACAGCAATCTCCATCACACT 2496
| ||||||| | | ||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct 2453 CACAGGAAGTTCCAGACTTATCAGCTTCCCAAACCTATAGACAGCAATCTCCATCACACT 2512
Query 2497 CCATCTCAAGCACAATATCTGAATCTGTAGCATCAAACATATCAGCTGCTGGTGATGATG 2556
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 2513 CCATCTCAAGCACAATATCTGAATCTGTCGCATCAAACATATCATCTGCTGGTGATGATG 2572
Query 2557 CAGAATACTCAAGCCCAAGCCCGGATCTGGTTCGGAGACGAAACACCAACAATGTACAAG 2616
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2573 CAGAATACTCAAGCCCAAGCCCGGCCCTGGTTCGGAGACGAAACACCAACAATGTACAAG 2632
Query 2617 AATCAGAGATCTCTCAACTGTAAACCAACTAGAAGTGCAAGATTTACCGTAGAACAAGTC 2676
||||||| ||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2633 AATCAGAAATCTCACAAATGTAAACCAACTAAAAGTGCAAGATCTACCGTAGAACAAGTC 2692
Query 2677 ATGTTGGTTCTGACAATCTTCTCCA-AGAAAATCGTACTATAGTtatatatatataGGTA 2735
|||| ||||||||||| ||| || | |||||| ||| ||||| |||||||| ||||
Sbjct 2693 ATGTCAGTTCTGACAATGGTCTTCATA-AAAATCACACTGTAGTTCTATATATA--GGTA 2749
Query 2736 GTGTCTTGACTT-GAAAACGAAAT 2758
||||||||||| |||| ||||||
Sbjct 2750 GTGTCTTGACTCAGAAA-CGAAAT 2772
> AT1G72960.1 | Symbols: | Root hair defective 3 GTP-binding protein
(RHD3) | chr1:27446236-27450862 FORWARD LENGTH=2415
Length=2415
Score = 427 bits (231), Expect = 2e-118
Identities = 635/822 (77%), Gaps = 60/822 (7%)
Strand=Plus/Plus
Query 243 TGTGGTCTTTCTTATGCTGTTGT-TGCAATCATGGGTCCTCAAAGTAGTGGGAAGAGTAC 301
||||| ||||||||||||||||| | | || ||||||||||||||||| ||||| |||||
Sbjct 139 TGTGGCCTTTCTTATGCTGTTGTCT-CTATTATGGGTCCTCAAAGTAGCGGGAAAAGTAC 197
Query 302 ACTTTTGAATCATTTGTTTAAAACCAGTTTTAGGGAAATGGATGCTTTTGCGGGAAGGAG 361
||| ||||| ||||||||| ||| | |||| ||| |||||||| || |||||||
Sbjct 198 ACTATTGAACCATTTGTTTGGAACAAACTTTATGGAGATGGATGCATTCAAGGGAAGGTC 257
Query 362 TCAAACAACTAAAGGTATTTGGATGGCTAGGTGTGTTGGTATTGAGCCTTTCACAATTGC 421
||| || || |||||||| ||| | || || |||| ||||| ||||||| ||| |||
Sbjct 258 TCAGACCACAAAAGGTATCTGGCTTGCAAGATGTGCCGGTATAGAGCCTTGCACCCTTG- 316
Query 422 T-ATGGATTTGGAGGGTACTGATGGGAGAGAAAGAGGCGAGGATGACACCACATTTGAGA 480
| |||||||| ||||| || ||||| ||||| |||| |||||||| || |||| || |
Sbjct 317 TAATGGATTTAGAGGGCACCGATGGCAGAGAGCGAGGAGAGGATGATACGGCATTCGAAA 376
Query 481 GACAAAGTGCCCTGTTT-GCTATCGCTGT-TGCCGATATTGTAC-TGATAAACATGTGGT 537
||| ||||| || ||| ||| | ||| | | | ||||| || | |||| ||||||||||
Sbjct 377 AACAGAGTGCTCT-TTTCGCTCTTGCTATCT-CTGATATCGT-CTTGATCAACATGTGGT 433
Query 538 GCCATGACATTGGAAGGGAACAGGCGGCCAACAAACCAT-TAC-T-AAAGACAGT-TTTC 593
| || |||||||| | ||||| || || || ||||| | | | | ||| || || |||
Sbjct 434 GTCACGACATTGGCCGTGAACAAGCTGCTAATAAACC-TCT-CTTGAAA-ACTGTCTTT- 489
Query 594 CAGGTCATGCTGCGGTTGTTTAGCCCTCGAAAAACAACTCTTCTTTTTGTCATACGTGAT 653
||||| ||| |||| |||||||| || || |||||||| | || ||||| ||||| |||
Sbjct 490 CAGGTGATGATGCGATTGTTTAGTCCACGTAAAACAACAATGCTGTTTGTAATACGAGAT 549
Query 654 AAAACAAAGACTCCGATAG-AGCTGCTT-GAACGTGCTC-TAAGAGAAGATATTCAGAAG 710
||||| ||| ||| | | | | || || | || || ||||||||||||||||||||
Sbjct 550 AAAACCCGGACACCGTTGGAAAAT--TTAGAGCCTG-TCTTAAGAGAAGATATTCAGAAG 606
Query 711 ATATGGGATT-TAGTTCGCAA-GCCTGAAGCACACAAA-AATACACCTCTAAATGAATTC 767
|||||||||| | |||| ||| ||||||||||||||| || || ||||||| ||| ||
Sbjct 607 ATATGGGATTCT-GTTC-CAAAGCCTGAAGCACACAAGGAA-ACTCCTCTAAGTGACTTT 663
Query 768 TTCAATGT--AATGATTGTTGCA-TTATCCAGCTATGAAGAGAAAGAAAAACAGTTTAA- 823
|||||||| || | ||||||| || ||||| ||||| ||||| ||| ||||||||||
Sbjct 664 TTCAATGTTGAA-G-TTGTTGCTCTT-TCCAGTTATGAGGAGAAGGAAGAACAGTTTAAA 720
Query 824 GCAAG-AGGTTGCTGAGTT-GAGGCAGA-GGTTTTTCCATTCCATTTCACCTGGG-GGAC 879
| | | || ||||| |||| ||| || | |||| | ||||| ||| |||| ||| || |
Sbjct 721 G-A-GCAGATTGCT-AGTTTGAGACA-ACGGTTCATGCATTCTATTGCACC-GGGAGGTC 775
Query 880 TTGCTGGTGATAGACGTGGTGT-AGTTCCTGCTTCAGGATTTT-C-TTTCAGCTCCCAG- 935
||||||| || ||| | || || | |||| || ||||| |||| | ||| || | | ||
Sbjct 776 TTGCTGGAGACAGAAGAGGAGTGA-TTCCAGCCTCAGG-TTTTGCATTT-AG-TGC-AGA 830
Query 936 -CAGATTTGGAAAGTTATAAAAGAGAATAGAG-A-CTTGGACCTTCCTGCTCACAAGGTA 992
||||| |||| ||| || |||||||||| || | |||| ||||||| || ||||||||
Sbjct 831 TCAGATCTGGAGAGTCATCAAAGAGAATA-AGGATCTTG-ACCTTCCAGCCCACAAGGTC 888
Query 993 ATGGTTGCCACTGTTCGGTGTGAAGAGATAGCCAATGAGAAG 1034
||||| || ||||| ||||| ||||| || || |||||||||
Sbjct 889 ATGGTGGCTACTGTGCGGTGCGAAGAAATTGCAAATGAGAAG 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138209927965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5