BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494464
Length=2679
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5... 2785 0.0
> AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5:18260441-18264346
FORWARD LENGTH=2874
Length=2874
Score = 2785 bits (1508), Expect = 0.0
Identities = 2150/2441 (88%), Gaps = 119/2441 (5%)
Strand=Plus/Plus
Query 251 AGATCTTTAGGAGTCTTTTGGAGCCAATATATACACCGGAGGATTTACGGATGCAACCTA 310
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 449 AGATCTTTAGGAGTCTTTTGGAGCCAATATATACACCGGATGATTTACTGCTGCAACCTA 508
Query 311 AACCACCATTTCTTACGCTTTTTCGTTTGGCTGATAAACACGGCAAGCGAATCGACTTCA 370
||| ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 509 AACTACCATTTCTTACGCTTTTTCGCTTAGCTGATAAACACGGC-AGCGAATCGACTTCA 567
Query 371 GGTATTCGAAAGATGACGACAGCAAAC-AACATATTGCTGAGG-AT----A--GTCCACA 422
||||||||||||||||||||| | ||| || |||||||||||| || | ||| | |
Sbjct 568 GGTATTCGAAAGATGACGACATC-AACAAAAATATTGCTGAGGAATAAAGATTGTCTAGA 626
Query 423 TGTTGAACC-TGAAGATGTGAAAGGGAAGTCGTTTGTGATTTGCTCCACTGAAAATCTCC 481
|| || ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 627 TG-TGGACCTTGAAGATGTGAAAGGGAAGTCGTTTGAGATTTGCTCCACTG--------- 676
Query 482 AATTACAAACTGAATTATCTTCTCTGTCCACCGCCTCTGAGAACTCTTTACCCGATGAAA 541
|| | | | | | |||||||||||| | ||||||||||||||| | |||||||
Sbjct 677 AA-T------T--A-T-T-TTCTCTGTCCACTGTTTCTGAGAACTCTTTAACTGATGAAA 724
Query 542 TGACACAAGAAGAAATGGTTTTTGATGAGGATAGTCCAG-ATGTTGAACCTGAAGATGTG 600
|| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 725 TGTCACAAGAAGAGGTGGTTATTGATGAGGATAGTCC-GAATGTTGAACCTGAAGATGTG 783
Query 601 AAACGGAAGTTGTTTGAGATTTGCTATACTAGAAAGCTCCAAATACAGACTAGTTCCTCT 660
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 784 AAAGGGAAGTTGTTTGAGATTTGCTATACGAGAAAGCTCCAAATACAGACTGGTTCCTCT 843
Query 661 GCAAACCCTTTAACCTATGAAATGACTACAAAACAAATGGTTGTTGATAAGGATAGTCTA 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GGAAACCCTTTAACCTATGAAATGACTACAAAACAAATGGTTGTTGATAAGGATAGTCTA 903
Query 721 CATGTTGAACCCACAGATGGGAGAGGGAAGTTGATTGAGATTTGCACCAAAAATAAGTGG 780
||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 904 CATGTGGAACCCGTAAATGGGAGAGGGGAGTTGATTGAGATTTGCACCAAAAATAAGTGG 963
Query 781 CCGAGGCCGATTTTCAGTGTTGAGGAAGAAAGAGGGCCAAAAAATGAGCAGAAATTTGTT 840
|| |||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||||
Sbjct 964 CCAAGGCCGATTTTCAGTGTTCAGGAAGAAAAAGGACCAAAAAATGAGCCCAAATTTGTT 1023
Query 841 TGTTCAGTTAAGATTGAGATACCAAATATAGAAGGTTCCTTTCACATGAAGGGAGATGCA 900
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1024 TGTTCAGTAAAGATTGAGATACCAAATATAGAAGGAACCTTTCACATGAAGGGAGATATT 1083
Query 901 AAATCAAAGAAAAAGCAAGCAGAAAACTCCTCAGCATACCACATGATAAGAGCCTTGGAA 960
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1084 AAATCAAAGAAAAAGCAAGCAGAAAACTCCTTAGCCTACCACATGATAAGAGCCTTGGAA 1143
Query 961 TCTTCTCTAATGAGTCTTGTCATAAGTAATCTGCAAATGCCGGAAAGTTTAGATGAGAAG 1020
||||||||| |||||||||||||||||||| | |||| |||| |||||||||||||||||
Sbjct 1144 TCTTCTCTAGTGAGTCTTGTCATAAGTAATTTACAAAAGCCGAAAAGTTTAGATGAGAAG 1203
Query 1021 AAT--T--A----TC--CA--TC---GATGGATTCTGATTCAGTGGAAGCAGTGGAGAAG 1065
||| | | || || || ||||||||| ||||||||||||||||||||||
Sbjct 1204 AATAATCCATTGCTCTTCAGCTCAGAGATGGATTC---TTCAGTGGAAGCAGTGGAGAAG 1260
Query 1066 ATCTTGAATTACAGTTTCGTGAACAAGAATCTTCTGAATGAACTGCTAACACACAATACT 1125
|||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |
Sbjct 1261 ATCTTGAATTACAGTTTCGTGAACAAGACTCTTCTGAAAGAACTGCTTACACACAATAAT 1320
Query 1126 TCACCTTTATTCCAGCGGCTTATGTTCGTCGGTGAGCCGGCTCTTTCTCTTGCCTTTACG 1185
||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 1321 TCACCTTTATTCCAGGGGCTTATGTTCGTTGGTGAGTCGGCTCTTTCTCTCGCCTTTACG 1380
Query 1186 AAACACTTATACCTCACGTACCCTAAGCTTGAACCCAAGGATTTGTCTCTGCTGCGAGAT 1245
||||||||||||||||| ||||||| ||| |||||||||||||||||| || ||||||||
Sbjct 1381 AAACACTTATACCTCACTTACCCTATGCTCGAACCCAAGGATTTGTCTGTGTTGCGAGAT 1440
Query 1246 GCTAATGCATGTAACGACAGATACGCTCGCGTAGCCGTCAAAAAAGGCATCTACCAGTTC 1305
|| ||| ||||| | |||| ||| ||| | || ||||||||||||||||| ||||| | |
Sbjct 1441 GCGAATACATGTCATGACAAATATGCTTGTGTCGCCGTCAAAAAAGGCATTTACCAATCC 1500
Query 1306 ATTATAAGCAATGTTGAAAAGCCAGAAAGAATGATTTTAGACTTCATAGA-TATGATGGG 1364
||||| ||| ||| ||||||||||| ||||| | ||| |||||||| | |||||||
Sbjct 1501 TTTATAGGCAGTGTCCCAAAGCCAGAAAAAATGACTACAGATTTCATAGAGT-TGATGGG 1559
Query 1365 CAAAGAAGATGATCCTGATCCAGATCCATACAGAGTTGTGAAAGCCCCAAAAATTCTCGC 1424
| | |||| | ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1560 C--A-AAGA--A----GAT---GATCCATACAGAGTTGTGAAAGCCCCCAAAATTCTCGT 1607
Query 1425 TAATCTTGTAGCTGCTGTAGCTGGAGCTGTTTATATTGATGTGAATTATAATGTGCAACG 1484
||||||| |||||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1608 TAATCTTCTAGCTGGTGTAGCTGGAGCTGTTTATATTGATGTGAAATATAACGTACAACG 1667
Query 1485 ACTCTGGGAGATCTTCAGGGGTCTCTTCGAGCCAATATATACACTGGATGATTTACGGAT 1544
||||| |||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 1668 ACTCTTGGAGATCTTCAGGGTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGAT 1727
Query 1545 GCAGCCTAAACCACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACATGGCAAGCGAAT 1604
||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1728 GCAACTTAAACAACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACACGGCAAGCAAAT 1787
Query 1605 CGACTTCAGGTATTCGAAAGTTGATGGCAGCAGAAAAAATATTGCTCAGGTATATCTTGA 1664
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| | ||
Sbjct 1788 CGACTTCAGGTATTCGAAAGATGGTGGCAGCAGAAAAAATATTGCTCAGGTATATATGGA 1847
Query 1665 CGATATGTTTATAGCTTCCGGGTGTTCTAAACGTATCGATACCGCAAAGCTGCTTGCTGC 1724
|||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||
Sbjct 1848 TGATATGTTTATAGCTTCCGGTTGTGCTAAACGTATAGATACCGCAAAGTTGCTTGCTGC 1907
Query 1725 TGAGGAAGCGTTGCAGAAGCTGTCAGAATGTATGCTCATCGAAAAGATTATTCATCAAGA 1784
|||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1908 TGAGGAAGCGATACAGAAGCTCTCAGAATGTATGCCCATCGAAAAGATTATTCATCAAGA 1967
Query 1785 TAATCTAGAAGCTGA---AATTCAGACTGGATCATCTTCTTTGCTCACTGCCTCTGAGAA 1841
||||||||| | ||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1968 TAATCTAGACGGTGAGGTAATTCAGACTGGATCATCTTCTTTGCTTACTGCCTTTGAGAA 2027
Query 1842 CCCTTTAACCGATGAAATGACAAAAGAACAAATGGTTATCGATGAGGATAGTCTAGATGT 1901
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2028 CCCTTTAACCGAAGAAATGACACAAGAACAAATGGTTATCGATGAGGATAGTCTAGATGT 2087
Query 1902 GGAACGGAAGTTGTTTGAGATTCGCTACACTGAAGAGCTCCAATTGCAAACTGGACCATC 1961
|||| ||||||||||||||| | | |||||||||||| | || |||||| ||||
Sbjct 2088 GGAATGGAAGTTGTTTGAGA--C--T-----GAAGAGCTCCAAATACAGACTGGATCATC 2138
Query 1962 TTCTATGCCCACTGTCTCTGAGAACCCCTTACCATGTGAAATTACACCAACAAAAATGGT 2021
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2139 TTCTATGTCCACTGTCTCTGAGAACCCCTTACCTTGTGAAATTACACCAACAAAAATGGT 2198
Query 2022 TATTGGTGAGGTTAGTCCACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTGAGAT 2081
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2199 TATTGGTGAGGTTAGTCCGCATGTTGAACTTGAAGATGTGAAAGGGAAGTCGTTTGAGAT 2258
Query 2082 TTCCTCCACTGAAACATCTTCTTTGCCCATCGCCTTTGAAAACCCTTTAACCGACGAACT 2141
| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 2259 TAGCTCCACTGAAACATCTTCTTTGCCCATCGCCTTTGAAAACCCATTAACCAATGAACT 2318
Query 2142 GACACAAGAACAAATGGTTATTGATGAGAATAGTCCATATGTTGAACCTGTAGATGCGAA 2201
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 2319 GACACAAGAACAAATGGTTATTGATGAGAATAGTCCATACGTTGAACCTGTAGATACTAA 2378
Query 2202 AGGGAAGTCGTTTGATA-TTAGCTCTACTAGAAACCTCCAGACACTGACTGGATCATCGT 2260
|||||||| |||||| | || ||||| | ||| || | | || || ||
Sbjct 2379 AGGGAAGTTGTTTGAGAGTT-GCTCTGTT-GAA---TC-A-----T--CT---TC---GT 2419
Query 2261 CATTGCCCACTGCCTCTGAGAACCTGTCAACCGATGAACCGACA-CAAGAACAAATGGTT 2319
| ||||||| |||||||||||| |||||| ||||| |||| ||| |||||||||||
Sbjct 2420 --T-GCCCACTACCTCTGAGAACCCGTCAACATATGAAATGACAACAA-AACAAATGGTT 2475
Query 2320 ATTGATGAGAATATTCCACATGTTGAACCTGAAGATGAGAAAGGGAAGTTGTTTGAGATT 2379
||||| || ||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2476 GTTGATAAGGATAGTCCACATGTTGAACCAGAAGATGAGAAAGGGAAGTTGTTTGAAATT 2535
Query 2380 TGCGCCAAGAATAAGTGGCCGAACCCGATTTTCAGTGTTGAGGAAGAAAGAGGGCCAA-A 2438
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2536 TGCGCCAAGAATAAGTGGCCGAACCCGATTTTCAGTGTTGAGGAAGAAAGAGGGC-AACA 2594
Query 2439 AAATGAGTTGAAATTTGTTTGTTCAGTTAAGATTGAGATCCCAAGTATAGAAGGGTACCT 2498
||| ||| |||| ||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 2595 AAACGAGCAGAAAATTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGG-TACCT 2653
Query 2499 TTTACATGAAGGGAGATGCAAAATCAACGAAAAAGGAAGCAGAAAACTCATCAGCCAACC 2558
|| |||| || |||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 2654 TTCACATAAAAGGAGATGCAAAACCAACGAAAAAGGAAGCAGAAAACTCCTCAGCCGACC 2713
Query 2559 ACATGATAAGAGCCTTGGAATCTTCTATAATGA-T-TTAGATGAGAAGAAGAAGAATCTG 2616
|||||||||||||||||||||||||| |||||| | || | | | || ||| ||||
Sbjct 2714 ACATGATAAGAGCCTTGGAATCTTCTGTAATGAGTCTT-G-TCATAAC--GAA---TCTG 2766
Query 2617 CAAATGCAGGAAAGTTTAGATG--AA-AACAAGAATCTGCA 2654
|||||||| |||| |||||||| || || |||||||||||
Sbjct 2767 CAAATGCATGAAAATTTAGATGGGAAGAAGAAGAATCTGCA 2807
Score = 566 bits (306), Expect = 5e-160
Identities = 527/628 (84%), Gaps = 38/628 (6%)
Strand=Plus/Plus
Query 402 TATTGCTGAGGATAGTCCACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTGTGAT 461
||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 2199 TATTGGTGAGGTTAGTCCGCATGTTGAACTTGAAGATGTGAAAGGGAAGTCGTTTGAGAT 2258
Query 462 TTGCTCCACTGAAAATCTCCAATTACAAACTGAATTATCTTCTCTGTCCACCGCCTCTGA 521
| ||||||||| ||| | | | | | || | | || ||| ||||| |||
Sbjct 2259 TAGCTCCACTG-AAA----C-A-T-----C-----T-TC-T-T-TGCCCATCGCCTTTGA 2297
Query 522 GAACTCTTTACCCGATGAAATGACACAAGAAGAAATGGTTTTTGATGAGGATAGTCCAGA 581
||| | ||| || ||||| ||||||||||| |||||||| |||||||| |||||||| |
Sbjct 2298 AAACCCATTAACCAATGAACTGACACAAGAACAAATGGTTATTGATGAGAATAGTCCATA 2357
Query 582 TGTTGAACCTGAAGAT-GTGAAACGGAAGTTGTTTGAGATTTGCTATACTAGAA--AGCT 638
|||||||||| |||| | ||| ||||||||||||||| ||||| | | ||| | ||
Sbjct 2358 CGTTGAACCTGTAGATACT-AAAGGGAAGTTGTTTGAGAGTTGCTCT-GTTGAATCATCT 2415
Query 639 CCAAATACAGACTAGTTCCTCTGCA-AACCCTTTAACCTATGAAATGACTACAAAACAAA 697
| | | |||| |||||| | ||||| | ||| ||||||||||| ||||||||||
Sbjct 2416 TC-GTTGCCCACTA---CCTCTG-AGAACCCGTCAACATATGAAATGACAACAAAACAAA 2470
Query 698 TGGTTGTTGATAAGGATAGTCTACATGTTGAACCCA-CAGATGGGAGAGGGAAGTTGATT 756
||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||| ||
Sbjct 2471 TGGTTGTTGATAAGGATAGTCCACATGTTGAA-CCAGAAGATGAGAAAGGGAAGTTGTTT 2529
Query 757 GAGATTTGCACCAAAAATAAGTGGCCGAGGCCGATTTTCAGTGTTGAGGAAGAAAGAGGG 816
|| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2530 GAAATTTGCGCCAAGAATAAGTGGCCGAACCCGATTTTCAGTGTTGAGGAAGAAAGAGGG 2589
Query 817 CCAA-AAAATGAGCAGAAATTTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGG 875
||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 -CAACAAAACGAGCAGAAAATTGTTTGTTCAGTTAAGATTGAGATACCAAATATAGAAGG 2648
Query 876 TTCCTTTCACATGAAGGGAGATGCAAAATCAAAGAAAAAGCAAGCAGAAAACTCCTCAGC 935
| |||||||||| || |||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 2649 TACCTTTCACATAAAAGGAGATGCAAAACCAACGAAAAAGGAAGCAGAAAACTCCTCAGC 2708
Query 936 ATACCACATGATAAGAGCCTTGGAATCTTCTCTAATGAGTCTTGTCATAA-GTAATCTGC 994
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 2709 CGACCACATGATAAGAGCCTTGGAATCTTCTGTAATGAGTCTTGTCATAACG-AATCTGC 2767
Query 995 AAATGCCGGAAAGTTTAGATGAGAAGAA 1022
|||||| |||| |||||||| ||||||
Sbjct 2768 AAATGCATGAAAATTTAGATGGGAAGAA 2795
Score = 427 bits (231), Expect = 2e-118
Identities = 455/558 (82%), Gaps = 35/558 (6%)
Strand=Plus/Plus
Query 2042 ATGTTGAACC-TGAAGATGTGAAAGGGAAGTCGTTTGAGATTTCCTCCACTGAAACATCT 2100
||| || ||| |||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 626 ATG-TGGACCTTGAAGATGTGAAAGGGAAGTCGTTTGAGATTTGCTCCACTGAATTATTT 684
Query 2101 TCTTTGCCCATC-GCCTT-TGAAAACCCTTTAACCGACGAACTGACACAAGAACAAATGG 2158
||| || ||| | | || ||| ||| ||||||| || ||| || |||||||| | |||
Sbjct 685 TCTCTGTCCA-CTG-TTTCTGAGAACTCTTTAACTGATGAAATGTCACAAGAAGAGGTGG 742
Query 2159 TTATTGATGAGAATAGTCC-ATATGTTGAACCTGTAGATGCGAAAGGGAAGTCGTTTGAT 2217
||||||||||| ||||||| | |||||||||||| ||||| ||||||||||| ||||||
Sbjct 743 TTATTGATGAGGATAGTCCGA-ATGTTGAACCTGAAGATGTGAAAGGGAAGTTGTTTGAG 801
Query 2218 ATTAGCTCTACTAGAAACCTCCAGACACTGACTGGATCATCGTCATTGCCCACTGCCTCT 2277
||| ||| ||| ||||| ||||| | | | || || | | | || | || ||
Sbjct 802 ATTTGCTATACGAGAAAGCTCCA-A-A-T-AC-AGA-C-T-G--GTT---C-CT--CT-G 844
Query 2278 GAGAA-CCTGTCAACCGATGAACCGAC-ACAAGAACAAATGGTTATTGATGAGAATATTC 2335
|| || ||| | |||| ||||| ||| |||| ||||||||||| ||||| || ||| ||
Sbjct 845 GA-AACCCT-TTAACCTATGAAATGACTACAA-AACAAATGGTTGTTGATAAGGATAGTC 901
Query 2336 CACATGTTGAACCTG-AAGATGAGAAAGGGAAGTTGTTTGAGATTTGCGCCAAGAATAAG 2394
|||||| ||||| | || ||| || |||| ||||| ||||||||||| |||| ||||||
Sbjct 902 TACATGTGGAACCCGTAA-ATGGGAGAGGGGAGTTGATTGAGATTTGCACCAAAAATAAG 960
Query 2395 TGGCCGAA-CCCGATTTTCAGTGTTGAGGAAGAAAGAGGGCCAAAAAATGAGTTGAAATT 2453
||||| || ||||||||||||||| ||||||||| ||| |||||||||||| |||||
Sbjct 961 TGGCC-AAGGCCGATTTTCAGTGTTCAGGAAGAAAAAGGACCAAAAAATGAGCCCAAATT 1019
Query 2454 TGTTTGTTCAGTTAAGATTGAGATCCCAAGTATAGAAGGGTACCTTTTACATGAAGGGAG 2513
|||||||||||| ||||||||||| |||| ||||||| || |||||| ||||||||||||
Sbjct 1020 TGTTTGTTCAGTAAAGATTGAGATACCAAATATAGAA-GGAACCTTTCACATGAAGGGAG 1078
Query 2514 ATGCAAAATCAACGAAAAAGGAAGCAGAAAACTCATCAGCCAACCACATGATAAGAGCCT 2573
|| ||||||| ||||||| ||||||||||||| | |||| ||||||||||||||||||
Sbjct 1079 ATATTAAATCAAAGAAAAAGCAAGCAGAAAACTCCTTAGCCTACCACATGATAAGAGCCT 1138
Query 2574 TGGAATCTTCTATAATGA 2591
||||||||||| || |||
Sbjct 1139 TGGAATCTTCTCTAGTGA 1156
Score = 353 bits (191), Expect = 4e-96
Identities = 219/233 (94%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 7 TCAGTAGAAGCAGTAGAGAAGATCTTGAACTACAGTTTCACGAACAAGACTCTTCTCAAA 66
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 7 TCAGTAGAAGCAGTAGAGAAGATCTTGAACTACAGTTTCGTGAACAAGACTCTTCTCAAG 66
Query 67 GATGCTATAACACAAAGATCTACTTTATTCGACCGGCTTGAGTTCTTCGGTGACTCTGTT 126
|| ||||| ||||||| |||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 67 GAAGCTATCACACAAAAATCTCCTTTATTCGACCGGCTTGAGTTCTTCGGCGACTCTATT 126
Query 127 CTTGAGGTCGCCTTCACTAATTACATCCGCCACACTTACCCTAACCTCAAAGTCAAGGAG 186
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 127 CTTGAGGTCGCCTTCACTAATTACATCTGCCACACTTACCCTAACCTCAAAGTCAAGGAG 186
Query 187 TTGTGTGACTTGCGAACTGCTAATGTAAGTAACGAGAAGTTCGCTCGTGTCGC 239
||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 187 TTGCGTGACTTGCGAACTGCAAATGTTAGTAACGAGAAGTTCGCTCGTATCGC 239
Score = 213 bits (115), Expect = 7e-54
Identities = 154/172 (90%), Gaps = 5/172 (3%)
Strand=Plus/Plus
Query 247 TTGCAGATCTTTAGGAG-TCTTTTGGAGCCAATATATACACCGGAGGATTTACGGATGCA 305
||| ||||||| ||| | ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1672 TTGGAGATCTTCAGG-GTTCTTTTGGAGCCAATATATACACTGGATGATTTACGGATGCA 1730
Query 306 ACCTAAACCACCATTTCTTACGCTTTTTCGTTTGGCTGATAAACACGGCAAGCGAATCGA 365
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1731 ACTTAAACAACCATTTCTTATGCTTTTTCGTTTGGCTGATAAACACGGCAAGCAAATCGA 1790
Query 366 CTTCAGGTATTCGAAAGATGACGACAGCA-AACAACATATTGCTGAGG-ATA 415
|||||||||||||||||||| | ||||| || || |||||||| ||| |||
Sbjct 1791 CTTCAGGTATTCGAAAGATGGTGGCAGCAGAAAAA-ATATTGCTCAGGTATA 1841
Score = 163 bits (88), Expect = 7e-39
Identities = 339/452 (75%), Gaps = 49/452 (11%)
Strand=Plus/Plus
Query 1943 AATTGCAAACTGGACCATCTTCTATGCCCACTGTCTCTGAGAACCCCTT-ACCATG-TGA 2000
|||| || |||||| |||||||| ||| |||| || ||||||||| || ||| | ||
Sbjct 1986 AATT-CAGACTGGATCATCTTCTTTGCTTACTGCCTTTGAGAACCCTTTAACC--GAAGA 2042
Query 2001 AATTACACCAACAA-AAATGGTTATTGGTGAGGTTAGTCCACATGTTGAACCT-GAAGAT 2058
||| ||| ||| || |||||||||| | ||||| ||||| | |||| ||| | |||| |
Sbjct 2043 AATGACA-CAAGAACAAATGGTTATCGATGAGGATAGTCTAGATGTGGAA--TGGAAGTT 2099
Query 2059 G--TGAAAGGGAAGTCGTTTGAGATTTCCTCCACTGAAACATCTTCTTTGCCCATC-GCC 2115
| ||| | |||| | | | | | | |||| | |||||||| || ||| | | |
Sbjct 2100 GTTTGAGACTGAAG-AGCTCCA-A-ATAC-AGACTGGATCATCTTCTATGTCCA-CTGTC 2154
Query 2116 TTTGAAAACCCTTTAACC--GACGAACTGACA-CAAGAACAAATGGTTATTGATGAGAAT 2172
| ||| ||||| || ||| | ||| | ||| ||| || |||||||||||| |||| |
Sbjct 2155 TCTGAGAACCCCTT-ACCTTG-TGAAATTACACCAACAA-AAATGGTTATTGGTGAGGTT 2211
Query 2173 AGTCCATATGTTGAACCTGTAGATGCGAAAGGGAAGTCGTTTGATATTAGCTCTACTAGA 2232
||||| ||||||||| || ||||| |||||||||||||||||| |||||||| |
Sbjct 2212 AGTCCGCATGTTGAACTTGAAGATGTGAAAGGGAAGTCGTTTGAGATTAGCTC--C---- 2265
Query 2233 AACCTCCAGACACTGACTGGATCATCGTCATTGCCCACT-GCCTCTGAGAACCTGTCAAC 2291
| || || | || ||| | || ||||||| | |||| ||| |||| | |||
Sbjct 2266 -A-CT---GA-A---AC---ATC-T--TCTTTGCCCA-TCGCCTTTGAAAACCCATTAAC 2309
Query 2292 CGATGAACCGACACAAGAACAAATGGTTATTGATGAGAATATTCCACATGTTGAACCTGA 2351
| |||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 2310 CAATGAACTGACACAAGAACAAATGGTTATTGATGAGAATAGTCCATACGTTGAACCTGT 2369
Query 2352 AGATGA-GAAAGGGAAGTTGTTTGAGATTTGC 2382
|||| | ||||||||||||||||||| ||||
Sbjct 2370 AGAT-ACTAAAGGGAAGTTGTTTGAGAGTTGC 2400
Score = 154 bits (83), Expect = 4e-36
Identities = 210/269 (78%), Gaps = 17/269 (6%)
Strand=Plus/Plus
Query 1962 TTCTATGCCCACTGTCTCTGAGAACCCCTTACCATG-TGAAAT-TACACCAACAA-AAAT 2018
|||| || ||||||| ||||||||| | ||| | || |||||| | || ||| || | |
Sbjct 684 TTCTCTGTCCACTGTTTCTGAGAACTCTTTAAC-TGATGAAATGT-CA-CAAGAAGAGGT 740
Query 2019 GGTTATTGGTGAGGTTAGTCC-ACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTG 2077
|||||||| ||||| |||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 741 GGTTATTGATGAGGATAGTCCGA-ATGTTGAACCTGAAGATGTGAAAGGGAAGTTGTTTG 799
Query 2078 AGATTTCCTCCACTGA-AACATCTTCTT-TGCCCA-TCG--CCTTTGAAAACCCTTTAAC 2132
|||||| || || || || | || | | | | | | ||| || ||||||||||||
Sbjct 800 AGATTTGCTATAC-GAGAA-AGCTCCAAATACAGACTGGTTCCTCTGGAAACCCTTTAAC 857
Query 2133 CGACGAACTGAC-ACAAGAACAAATGGTTATTGATGAGAATAGTCCATATGTTGAACCTG 2191
| | ||| |||| |||| ||||||||||| ||||| || |||||| | |||| ||||| |
Sbjct 858 CTATGAAATGACTACAA-AACAAATGGTTGTTGATAAGGATAGTCTACATGTGGAACCCG 916
Query 2192 TAGATGCGAAAGGGAAGTCGTTTGATATT 2220
|| ||| || |||| ||| | |||| |||
Sbjct 917 TAAATGGGAGAGGGGAGTTGATTGAGATT 945
Score = 119 bits (64), Expect = 2e-25
Identities = 177/227 (78%), Gaps = 26/227 (11%)
Strand=Plus/Plus
Query 402 TATTGCTGAGGATAGTCC-ACATGTTGAACCTGAAGATGTGAAAGGGAAGTCGTTTGTGA 460
||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||| ||
Sbjct 744 TATTGATGAGGATAGTCCGA-ATGTTGAACCTGAAGATGTGAAAGGGAAGTTGTTTGAGA 802
Query 461 TTTGCTCCACTGA-AAATCTCCAATTACAAACTGAATTATCTTCTCTGTCCACCGCCTCT 519
|||||| || || ||| |||||| |||| |||| || | ||||| |
Sbjct 803 TTTGCTATAC-GAGAAAGCTCCAAATACAGACTGG-TT--C--CTCTG------G----- 845
Query 520 GAGAACTCTTTACCCGATGAAATGAC-ACAAGAAGAAATGGTTTTTGATGAGGATAGTCC 578
| ||| ||||| || |||||||||| |||| || |||||||| ||||| |||||||||
Sbjct 846 -A-AACCCTTTAACCTATGAAATGACTACAA-AACAAATGGTTGTTGATAAGGATAGTCT 902
Query 579 AGATGTTGAACCTG-AAGATGTGAAACGGAAGTTGTTTGAGATTTGC 624
| |||| ||||| | || ||| || | || ||||| |||||||||||
Sbjct 903 ACATGTGGAACCCGTAA-ATGGGAGAGGGGAGTTGATTGAGATTTGC 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133042732836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5