BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494466
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ... 1535 0.0
AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ... 734 0.0
> AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1,
ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244266-18246450
FORWARD LENGTH=1222
Length=1222
Score = 1535 bits (831), Expect = 0.0
Identities = 1014/1096 (93%), Gaps = 37/1096 (3%)
Strand=Plus/Plus
Query 1 tttttttGCTTTCGTCTTC--G-G-gagagagagagag----agagagagaAATTTGGTT 52
||||||||||||||||||| | | ||||||||||||| | ||||||||||||||||
Sbjct 30 TTTTTTTGCTTTCGTCTTCAAGAGAGAGAGAGAGAGAGATACAAAGAGAGAAATTTGGTT 89
Query 53 GTTTGTTGAC-GAAGCTTCTTCGGTCTCTCTTCTCCGTCTTTCGATTGTCAACGCG-GCT 110
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 90 GTTTGTTGACGGAAGCTTCTTCGGTCTCTCTTCTCCGTCTTACGATTGTCAACGCGTGGT 149
Query 111 TTCATCTTCAATTTTCTTTCTATTTTAGCAGAACATTCTCCAGCTTCAAATACTGTATC- 169
| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| ||
Sbjct 150 TCCATCTTCAATTTTGTTTCTATTTTAGCAGAAGTTTCTCGAGCTTCAAATACTGTTTCA 209
Query 170 -ATCCGATCAATCAATC-ATCATGGCTAGCTCTGGAAACAAGAACATCAACGCCAAATTG 227
|| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GAT-CAATCAATCAGTCAATCATGGCTAGCTCTGGAAACAAGAACATCAACGCCAAATTG 268
Query 228 GTGTTACTAGGAGATGTTGGGGCTGGAAAATCAAGTCTTGTGCTGCGTTTTGTTAAAGAT 287
|| ||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||
Sbjct 269 GTATTACTAGGAGATGTTGGAGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGAT 328
Query 288 CAGTTTGTTGAATTCCAGGAATCAACCATAGGTGCAGCTTTTTTCTCTCAAACATTGGCT 347
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 329 CAGTTTGTTGAATTTCAGGAATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCT 388
Query 348 GTGAATGATGCGACTGTGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGGTACCAT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 389 GTGAATGATGCGACTGTGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCAC 448
Query 408 AGCTTGGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACA 467
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 AGTTTGGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACT 508
Query 468 AATCAAGCGTCATTTGAGAGGGCGAAGAAATGGGTTCAAGAACTGCAGGCACAAGGTAAC 527
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 509 AATCAAGCCTCATTTGAGAGGGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAAC 568
Query 528 CCTAATATGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGATGCAAGGAAGGTG 587
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 569 CCTAATATGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAGGTG 628
Query 588 TCTGCAGAGGAGGCAGAGATATATGCTCAAGAGAACAGCCTTTTCTTCATGGAAACCTCA 647
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 629 TCTGCAGAGGAGGCAGAGATATATGCTCAAGAGAACAGCCTTTTCTTTATGGAAACCTCA 688
Query 648 GCGAAGACCGCAACAAATGTCAAAGACATATTCTACGAAATCGCGAAAAGGCTACCGCGT 707
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 689 GCGAAGACCGCAACAAATGTCAAAGACATATTCTACGAAATAGCGAAAAGGCTACCACGT 748
Query 708 GTACAGCCAGCTGAAAACCCAACAGGAATGGTTCTCCCAAACGGGCCAGGGGCTACAGCA 767
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 749 GTACAGCCAGCTGAAAACCCGACAGGAATGGTTCTCCCAAACGGGCCAGGGGCTACGGCA 808
Query 768 GTGAGTTCATCGTGTTGTGCTTAGTTTCGTACCTTAAGAGAGATCTCTTTTGGTTAGTCG 827
|||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 809 GTGAGTTCATCGTGTTGTGCTTAGATTCGTACCTGAAGAGAGATCTCATTTGGTTAGTCA 868
Query 828 CATAGTAGAGAACATC-GAGACTTT-ATGTGTTTGCTTC------GTCTTTGTTACTTTA 879
|||||||||||||||| | |||||| ||||||||||||| |||||||||||||||
Sbjct 869 CATAGTAGAGAACATCTG-GACTTTCATGTGTTTGCTTCTTCTTCGTCTTTGTTACTTTA 927
Query 880 CTTTTCTTGCATTGACAACAACAACAGTGTATATCATGATGATACTT---CTGCCTTTGT 936
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 928 CTTTGCTTGCATTGACAACAACAACAGTGTATATCATGATGATACTTATTCTGCCTTTGT 987
Query 937 GGAATATGAAGATATTTGTATTTGGAGAGATTTAT-T-TGGAT--CTCTTTTGTAATTAG 992
| ||| ||||||||||||||||||||||||||||| | | || |||||||||||||||
Sbjct 988 GAAATCTGAAGATATTTGTATTTGGAGAGATTTATATATATATATCTCTTTTGTAATTAG 1047
Query 993 ATATCATAACTTAGTGTCaaaaaagaaaaaTGTGCTTCCATCTTTCGTTTATGTTTTAAG 1052
| | || |||||||| | ||||| || ||||||| |||||||||||||||||||||
Sbjct 1048 AAAACAAAACTTAGTC-CGAAAAA-AA---TGTGCTT--ATCTTTCGTTTATGTTTTAAG 1100
Query 1053 TGAATGCTCAGAGTTA 1068
|||||||||||| |||
Sbjct 1101 TGAATGCTCAGATTTA 1116
> AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B,
ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family
protein | chr4:10687198-10689617 REVERSE LENGTH=1014
Length=1014
Score = 734 bits (397), Expect = 0.0
Identities = 549/623 (88%), Gaps = 8/623 (1%)
Strand=Plus/Plus
Query 176 TCA-ATCAATCAT-CATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTGTT 232
||| ||| || || ||||||| || |||||||||||| ||| |||||||||||||||||
Sbjct 154 TCAGATCGATAATCCATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTT 212
Query 233 ACTAGGAGATGTTGGGGCTGGAAAATCAAGTCTTGTGCTGCGTTTTGTTAAAGATCAGTT 292
|| ||||||||||| ||||||||||||||||||||| | || ||||| |||||||||||
Sbjct 213 GCTTGGAGATGTTGGTGCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTT 272
Query 293 TGTTGAATTCCAGGAATCAACCATAGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAA 352
|||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||
Sbjct 273 TGTTGAATTCCAGGAATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAA 332
Query 353 TGATGCGACTGTGAAGTTTGAGATATGGGATACAGCTGGTCAGGAACGGTACCATAGCTT 412
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 333 CGATGCCACTGTGAAGTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTT 392
Query 413 GGCTCCAATGTACTACAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACAAATCA 472
|||||||||||||||||| ||||| |||||||| || ||||| ||||| |||| |||||
Sbjct 393 GGCTCCAATGTACTACAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCA 452
Query 473 AGCGTCATTTGAGAGGGCGAAGAAATGGGTTCAAGAACTGCAGGCACAAGGTAACCCTAA 532
|| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 453 GGCTTCGTTTGAGAGGGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAA 512
Query 533 TATGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGATGCAAGGAAGGTGTCTGC 592
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 513 TATGGTCATGGCCCTTGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAGGTGACAGC 572
Query 593 AGAGGAGGCAGAGATATATGCTCAAGAGAACAGCCTTTTCTTCATGGAAACCTCAGCGAA 652
|||||| ||| | | ||||||||| || ||| | ||||||||||||||||| ||||| ||
Sbjct 573 AGAGGATGCACAAACATATGCTCAGGAAAACGGTCTTTTCTTCATGGAAACTTCAGCAAA 632
Query 653 GACCGCAACAAATGTCAAAGACATATTCTACGAAATCGCGAA-AAGGCTACCGCGTGTAC 711
||||| || ||||||||||| |||||||| |||||||| || |||||||||||| ||||
Sbjct 633 AACCGCTACTAATGTCAAAGAGATATTCTATGAAATCGC-AAGAAGGCTACCGCGAGTAC 691
Query 712 AGCCAGCTGAAAACCCAACAGGAATGGTTCTCCCAAAC-GGGCCAGGGGCTACAGCAGTG 770
||||| | ||||||||||||||||||||||| ||| || |||||| || || ||||||
Sbjct 692 AGCCAACAGAAAACCCAACAGGAATGGTTCTGCCAGACAGGGCCATGGA-TAGGGCAGTG 750
Query 771 AGTTCATCGTGTTGTGCTTAGTT 793
|| ||||| ||||||||||||||
Sbjct 751 AGCTCATCTTGTTGTGCTTAGTT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5