BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494467
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45120.1 | Symbols: | Eukaryotic aspartyl protease family p... 1853 0.0
> AT5G45120.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:18241003-18242478 FORWARD LENGTH=1476
Length=1476
Score = 1853 bits (1003), Expect = 0.0
Identities = 1174/1259 (93%), Gaps = 2/1259 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCCTTGAGAGAAGTGAGAGATGGTTATTTGATAACCTTAAACATTGGAACACCT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 ATGGAACCCTTGAGAGAAGTGAGAGATGGTTATTTGATAACCTTAAACATTGGAACACCT 276
Query 61 CCACAAGCAGTCCAAGTGTACATGGACACTGGTAGTGATCTCACTTGGGTCCCATGTGGG 120
||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||||||||
Sbjct 277 CCACAAGCAGTTCAAGTGTACTTGGACACAGGAAGTGATCTCACATGGGTCCCATGTGGG 336
Query 121 AATCTAAGTTTTGATTGCATAGACTGTAATGATCTCAAGAGCAACAATCTAAAATCATCA 180
|||||||||||||||||||| || ||| |||||||||||| |||| ||||||||||| ||
Sbjct 337 AATCTAAGTTTTGATTGCATTGAATGTTATGATCTCAAGAACAACGATCTAAAATCACCA 396
Query 181 TCAATCTTCTCCCCTCTTCACTCATCTTCATCTTTTAGAGCCTCTTGCGCTAGTTCCTTT 240
|| |||| || |||||||| |||||| |||||||||||| ||||| ||||||||||||
Sbjct 397 TCGGTCTTTTCTCCTCTTCATTCATCTACATCTTTTAGAGATTCTTGTGCTAGTTCCTTT 456
Query 241 TGCGCCGAGATCCATAGCTCAGACAATCCTTTTGACCCTTGTGCAATCGCTGGCTGCTCT 300
|||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 457 TGCGTCGAGATCCATAGCTCAGACAATCCTTTTGACCCTTGTGCAGTCGCCGGCTGCTCT 516
Query 301 GTGAGTATGCTTCTCAAGTCCACTTGCATAAGGCCTTGTCCTTCCTTTGCTTATACTTAT 360
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 517 GTGAGTATGCTTCTCAAGTCTACTTGCGTAAGGCCTTGTCCTTCCTTTGCTTATACTTAT 576
Query 361 GGTGAAGGTGGTCTTGTCTCTGGAATACTAACCAGAGATATACTAAAGGCTCGAACCAGG 420
||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 577 GGTGAAGGTGGTCTTATCTCTGGGATACTAACCAGGGATATACTGAAGGCTCGAACTAGG 636
Query 421 GATGTCCCAAGGTTCTCTTTTGGTTGTGTAACGTCCACTTACCACGAACCTATTGGCATT 480
||||| |||||||| |||||||| || |||||||||||||||| |||||||||||||||
Sbjct 637 GATGTTCCAAGGTTTTCTTTTGGCTGCGTAACGTCCACTTACCGGGAACCTATTGGCATT 696
Query 481 GCCGGATTTGGAAGAGGTTTACTCTCTCTCCCTTCACAGTTAGGCTTTCTTGAAAAGGGA 540
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 697 GCTGGATTTGGAAGAGGTTTACTCTCTCTCCCTTCGCAACTAGGCTTTCTTGAAAAGGGA 756
Query 541 TTTTCTCACTGTTTCTTGCCTTTCAAGTTTGTCAACAACCCTAACATCTCAAGCCCTTTG 600
||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 757 TTTTCCCATTGTTTCTTGCCTTTCAAGTTTGTCAACAATCCTAACATCTCTAGCCCTTTG 816
Query 601 ATCCTAGGAGCCTCCGCTTTATCAATAAATCTCACGGACTCTCTGCAGTTTACTCCCATG 660
|||||||||||||| |||||||| |||||||| || |||||| |||| ||||||||||||
Sbjct 817 ATCCTAGGAGCCTCTGCTTTATCGATAAATCTAACCGACTCTTTGCAATTTACTCCCATG 876
Query 661 TTGAATACTCCAGTGTACCCCAACAGCTACTATATCGGTTTAGAATCAATTACAATAGGC 720
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 877 TTGAATACTCCAATGTATCCCAACAGCTACTACATCGGTTTAGAATCAATTACAATAGGC 936
Query 721 ACAAATATCACTCCTACACAAGTTCCTTTAACCTTAAGACAATTTGATTCACAAGGAAAC 780
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 ACAAATATCACTCCCACACAAGTTCCTTTAACCTTAAGACAATTTGATTCACAAGGAAAT 996
Query 781 GGAGGAATGTTGGTTGATTCAGGTACGACTTACACACATTTACCA-AATCCTTTCTACTC 839
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 997 GGAGGAATGTTGGTCGATTCGGGTACGACTTACACACATTTACCCGAA-CCTTTCTACTC 1055
Query 840 ACAACTCCTCACAATTCTCCAATCAACCATCACATACCCGAGAGCCACGGAAACTGAATC 899
|||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1056 ACAACTCCTCACAACTCTCCAATCAACAATCACATACCCAAGAGCCACTGAAACTGAATC 1115
Query 900 AAGAACAGGATTTGATCTCTGCTACAAGGTCCCATGTCCTAACAACAATCTCACTAGCCT 959
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1116 AAGAACAGGCTTTGATCTCTGCTACAAAGTCCCGTGTCCTAACAACAATCTCACTAGCCT 1175
Query 960 AGAAAATGATGTAATGATGGTCTTTCCTTCAATTACATTCAATTTCTTGAACAATGCAAC 1019
||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 1176 CGAAAACGATGTAATGATGATATTTCCTTCAATTACATTCCATTTCTTGAACAATGCAAC 1235
Query 1020 CTTACTTCTCCCGCAAGGTAACTCATTTTATGCAATGAGCGCCCCTAGCGATGGTTCTGT 1079
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 1236 CTTACTTCTCCCGCAAGGTAACTCTTTTTACGCAATGAGCGCCCCTAGCGATGGTTCCGT 1295
Query 1080 GGTGCAATGCTTGTTGTTTCAGAACATGGAAGATGGAAATTACGGACCTGCAGGAGTTTT 1139
||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||||
Sbjct 1296 GGTGCAATGCTTGTTGTTTCAGAACATGGAAGATGGAGACTACGGACCGGCCGGAGTTTT 1355
Query 1140 TGGGAGCTTTCAGCAACAAAATGTGAAAGTTGTGTATGATTTGGAGAAAGAGAGAATAGG 1199
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1356 TGGGAGCTTTCAGCAGCAGAATGTGAAAGTTGTGTATGATTTGGAGAAAGAGAGAATTGG 1415
Query 1200 GTTTCAAGCTATGGATTGTGTCTTAGAAGCTGCTTCACATGGACTCAACCAAGGCTCAT 1258
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 CTTCCAAGCTATGGATTGTGTCTTAGAAGCTGCTTCACATGGACTCAACCAAGGCTCAT 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5