BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494472
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45100.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1269 0.0
AT4G19700.1 | Symbols: RING | SBP (S-ribonuclease binding prote... 324 1e-87
> AT5G45100.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr5:18218699-18219960 FORWARD LENGTH=1174
Length=1174
Score = 1269 bits (687), Expect = 0.0
Identities = 833/899 (93%), Gaps = 27/899 (3%)
Strand=Plus/Plus
Query 34 AATGGCTGTTGAAGCAAGACACATGAATCTCTTCTCTTCTCAATACATTACCGACAGAGA 93
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 70 AATGGCTGTTGAAGCAAGACACATGAATCTCTTCTCTTCTCAATACATTACCAACAGAGA 129
Query 94 ATGTGTTAAATCTCAAACGAATATGAATTAC-AACAACGGATTCGCCGGCGGTGAG-TTT 151
||||||||||||||||||||||||||| || ||||| | |||||||||||| | |||
Sbjct 130 ATGTGTTAAATCTCAAACGAATATGAACAACGGACAAC-AAATCGCCGGCGGTG-GTTTT 187
Query 152 CCGGTGACAATCGGTGATCGGAACTTACAGTACATAGATCCGATTAACAGCTTCAACAAA 211
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 188 CCGGTAACAATCGGTGATCGGAATTTACAGTACATAGATCCGATTAACAGCTTCAACAAA 247
Query 212 TCAGAAAGCAATCTCACAGCGATTTCAAAACGTCAAAGAGATACAACGTTTGATTC--A- 268
||||||||| | |||||||| |||||||||||||| |||||| ||||||||||||| |
Sbjct 248 TCAGAAAGCGAGCTCACAGCTATTTCAAAACGTCAGAGAGATTCAACGTTTGATTCAGAC 307
Query 269 -----AA-CGCATCTCAGAAACGCAGATAAATCGCGTTTTCT-C--CGTCGTTAATCGAC 319
|| ||||||||||||||||||| ||||||||||||| | |||| |||||||||
Sbjct 308 GCTTTAATCGCATCTCAGAAACGCAGAGCAATCGCGTTTTCTCCGGCGTCATTAATCGAC 367
Query 320 GCAGAGTTAGTTTCTCAGATTCAACAGCAAAACTCAGAAATCGATAGATTCGTTA-TGCA 378
|||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 368 GCAGAGTTAGTTTCACAGATCCAACAGCAAAACTCAGAAATCGATAGATTCG-TAGCGCA 426
Query 379 ACAAACGGAAACGTTGAGAATCGAATTAGAAGCGAGACAAAGAACGCAAACGCGGATGTT 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ACAAACGGAAACGTTGAGAATCGAATTAGAAGCGAGACAAAGAACGCAAACGCGGATGTT 486
Query 439 AGCGACAGCGGTACAAAACGCGATTTTGAAAAAGCTAAAAGAGAAAGACGAAGAGATAAT 498
|||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||| ||
Sbjct 487 AGCGTCAGCGGTACAAAACGCGATATTGAAAAAGCTGAAAGCGAAAGACGAAGAGATTAT 546
Query 499 AAGAATGGGGAAATTAAACTGGGTTTTACAAGAACGTGTGAAGAATCTCTACGTTGAGAA 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 547 AAGAATGGGGAAATTAAACTGGGTTTTACAAGAACGTGTGAAGAATCTCTACGTAGAGAA 606
Query 559 TCAGATCTGGCGTGATTTAGCACAAAGTAATGAAGCTACTGCGAATAATCTTAGATCAAA 618
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 607 TCAGATCTGGCGTGATTTAGCACAAACTAATGAAGCTACTGCGAATAATCTCAGATCAAA 666
Query 619 TCTTGAACAAGTTTTAGCTCAAGTTGATGATTTTGATGCGTTTCGTCGTCCTTTGGTTGA 678
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 667 TCTCGAACAAGTTTTGGCTCAAGTTGATGATTTAGATGCGTTTCGTCGTCCTTTGGTTGA 726
Query 679 AGAAG---ACG---CAGAATCTAGCTGTGGAAGTTGTGACGGAGGTGAAGTAACGGCGGT 732
||||| | | ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 727 AGAAGCTGATGATGCAGAATCTAGCTGTGGAAGCTGTGACGGAGGTGATGTAACGGCGGT 786
Query 733 T---AACGGAGGGTGTAGACGGTGCGGTGATTTAACGGCGAGTGTGTTGGTGTTGCCTTG 789
| |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 787 TGTTAACGGAGGATGTAAACGGTGCGGTGAGTTAACGGCGAGTGTGTTGGTGTTGCCTTG 846
Query 790 TCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGTCGGCTTTGTTACAGACGTGTCCTGT 849
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 847 TCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGTCGGCTTTGTTGCGGACGTGTCCTGT 906
Query 850 ATGTGATATGGTCATGACTGCTAGTGTACATGTTAACATGTCATCATGACCATGTTTTT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 907 ATGTGATATGGTCATGACTGCTAGTGTACATGTTAACATGTCATCATGACCATTTTTTT 965
> AT4G19700.1 | Symbols: RING | SBP (S-ribonuclease binding protein)
family protein | chr4:10713561-10714707 REVERSE LENGTH=1059
Length=1059
Score = 324 bits (175), Expect = 1e-87
Identities = 471/607 (78%), Gaps = 48/607 (8%)
Strand=Plus/Plus
Query 332 TCTCAGATTCAACAGCAA-AAC--TCAGAAATCGATAGATTCGTTATG--CAACAAACGG 386
|||||||||||| | ||| ||| ||||| |||||||| |||| || | || |||||||
Sbjct 409 TCTCAGATTCAAAACCAACAACAGTCAGAGATCGATAGGTTCG-TA-GCTCAGCAAACGG 466
Query 387 A-AACGTTGAGAATCGA-ATTAGAAGCGAGACAA-AGAACGCAAACGCGGATGTTAGCGA 443
| || | | ||||| || ||| ||||| || ||| | ||||||||||||||||||||||
Sbjct 467 AGAA-GCTAAGAATAGAGATT-GAAGCAAGGCAACA-AACGCAAACGCGGATGTTAGCGT 523
Query 444 CAGCGGTACAAAACGCGATTTTGAA-AAAGCTAAAAGAGAAAGACGAAGAGATAATAAGA 502
| ||||| ||||||| || || ||| ||||||||||||||||| || || || |
Sbjct 524 CTGCGGTTCAAAACGTTATAGCCAAGAAA-CTAAAAGAGAAAGACGATGAAATCGTACGG 582
Query 503 ATGGGGAAA-TTAAACTGGGTTTTACAAGA-ACGTGTGAAGAATCTCTACGTTGAGAATC 560
|| |||| ||||||||||||||||||| | | ||||||| ||| ||||| || ||||
Sbjct 583 AT-TCGAAACCTAAACTGGGTTTTACAAGAGA-GGGTGAAGAGTCTTTACGTCGAAAATC 640
Query 561 AGATCTGGCGTGATTTAGCACAAAGTAATGAAGC-TACTGCGAATAATCTTAGATCAAAT 619
|||| ||||||||| | || |||| || ||||| || || |||| |||| || ||||
Sbjct 641 AGATTTGGCGTGATATCGCTCAAACCAACGAAGCAAAC-GCTAATACTCTTCGAACAAAC 699
Query 620 CTTGAACAAGTT-TTAGCTCAAGTTG--ATGATTTTGATGCGTTTCGTCGTCCTTTGGTT 676
|| || |||||| || |||||| | | | | ||| | || ||| | || || ||
Sbjct 700 CTAGACCAAGTTCTT-GCTCAACTCGAAACG-TTTCCAACCGCTTC--AG-CCGTT-GTA 753
Query 677 GAAGAAGACGCAGAATCTAGCTGTGGAA---GTT---GTGA---CGGAGGTGAA---GTA 724
||||| || || ||||| || ||||||| ||| |||| || |||||| |||
Sbjct 754 GAAGACGATGCGGAATCGAGTTGTGGAAGTTGTTGCGGTGATGGTGGTGGTGAAGCGGTA 813
Query 725 ACGGCGGTTAACGGAGGGTGTAGACGGTGCGGTGATTTA-ACGGCGAGTGTGTTGGTGTT 783
||||||||| || || |||| |||||||||||| | | |||||||||||||||||
Sbjct 814 ACGGCGGTTGGTGGTGGTTGTAAACGGTGCGGTGAGAGAGA-AGCGAGTGTGTTGGTGTT 872
Query 784 GCCTTGTCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGT-CGGCTTTGTTACAGACGT 842
|| |||||||||||||||||||||||||||||||| | || |||||||||||| ||| |
Sbjct 873 ACCATGTCGTCATTTGTGTTTGTGTACGGTTTGTGG-TGGTTCGGCTTTGTTACGGACTT 931
Query 843 GTCCTGTATGTGATATGGTCATGA-CTGCTAGTGTACATGTTAACATGTCATCATGACCA 901
|||| || || ||||||||||||| | |||||||| |||||||||||||| || ||||||
Sbjct 932 GTCCGGTTTGCGATATGGTCATGAAC-GCTAGTGTGCATGTTAACATGTCTTCTTGACCA 990
Query 902 TGTTTTT 908
| |||||
Sbjct 991 TCTTTTT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5