BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494476
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45070.1 | Symbols: AtPP2-A8, PP2-A8 | phloem protein 2-A8 |... 1554 0.0
> AT5G45070.1 | Symbols: AtPP2-A8, PP2-A8 | phloem protein 2-A8
| chr5:18187630-18189431 REVERSE LENGTH=1403
Length=1403
Score = 1554 bits (841), Expect = 0.0
Identities = 1086/1203 (90%), Gaps = 21/1203 (2%)
Strand=Plus/Plus
Query 35 aaaaaGTTTTCTTATGGCTGCTTCTTCTTCTGTGAGACCAACCACAACGGGACCTCAAGT 94
|||||| | |||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 57 AAAAAGCTCTCTTATGGCTGCTTCTTCTTCTGTGAGACCCACCCCAACGGGACCTCAAGT 116
Query 95 GTTCATCAACTTCCGCGGAAAAGATGTGCGCAACGGCTTCTTAAGCTTTCTTGAGCCTGC 154
||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 117 GTTCATCAACTTCCGAGGAAAAGATCTGCGTAACGGCTTCCTAAGCTTTCTTGAGCCTGC 176
Query 155 CATGAGAGAAGCTAACATAAACGTCTTCATAGACAAGCACGAAGTGGTGGGCACAGATCT 214
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 177 CATGAGAGAAGCGAACATAAACGTTTTCATAGACAAGGACGAAGTGGTGGGCACAGATCT 236
Query 215 GGTTAACCTTTTTGTTAGGATCCAAGAGTCAAGAGTCGTGGTGGTGATCTTCTCTAAGGA 274
||||||||||||||| ||||||||||||||||| || | |||||||||||| ||||||||
Sbjct 237 GGTTAACCTTTTTGTGAGGATCCAAGAGTCAAGGGTTGCGGTGGTGATCTTTTCTAAGGA 296
Query 275 TTACACAAGTTCGGAATGGTGCTTAGATGAACTGGCCCAGATCAAGGATTGCATTGATCA 334
||||||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 297 CTACACAAGTTCGGAATGGTGCTTAGATGAGCTGGCCGAGATCAAGGACTGCATTAATCA 356
Query 335 AGGCGGTCTCAATGTGATTCCCATTTTCTACAAACTTGCACCTTCCTCCGTGGAAGAACT 394
|||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 357 AGGCGGTCTCAATGCGATTCCCATCTTCTACAAACTTGCACCTTCCTCCGTGTTAGAACT 416
Query 395 CAAAGGAGGCTTTGGCGATAGTTTCAGGGTTCTAAA-GTGCAAATATAAAGACGAGCCTG 453
||||||||| |||||||||| ||||||||||||||| | | ||||||||| | || ||||
Sbjct 417 CAAAGGAGGTTTTGGCGATACTTTCAGGGTTCTAAAGGAG-AAATATAAAAATGATCCTG 475
Query 454 AAAGAACTCAAAAATGGGAAGAAGCTTTAAAGTCTATTCCTAAAATAAAGGGCCTGACCT 513
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| |
Sbjct 476 AAAGAACTCAAAAATGGCAAGAAGCTTTAGAGTCTATTCCTAAACTAAAGGGCCTGAGAT 535
Query 514 TGTCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAACGATTTTCGAGATTC 573
|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 536 TGGCAGAAAAAAGTGATAGGAACGAAAGAGAGTTCATGAATGAAATGATTCTCGAGATTC 595
Query 574 AGAGATCGCTGTCACAAATCGCCG-TGAAGGGAAACCCGAAGTTAGAATCGAATTCACTA 632
| | | |||||| ||||||| || ||||||||||||| ||| |||||||||||||| |
Sbjct 596 AAAAAGCGCTGTGGCAAATCG-CGATGAAGGGAAACCCAAAGGTAGAATCGAATTCAAAA 654
Query 633 GGAGGATTTATGGTCCCTGCAAGGAGACTTGTCATTACTCACGCTGAGAATCCTGAAAAA 692
||||||||| |||||||||||||||||||| |||| ||||| |||| ||||||||||||
Sbjct 655 GGAGGATTTCTGGTCCCTGCAAGGAGACTTACCATTGCTCACTCTGATAATCCTGAAAAA 714
Query 693 TGGACCTGGAGTGCTATCTACGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 752
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGGACCTGGAGTGCTATCTATGACAGACCACACAAAGCAGACATCGAAATTGCAACGATG 774
Query 753 ATTAACACTCACAGC-TTAATAAAAATAAACGGAGATTTTCACACGAGAAAATTGATACC 811
|||||||||||| || || |||||||||| |||||||||||||||||||||||||||||
Sbjct 775 ATTAACACTCAC-GCCTTGATAAAAATAAGTGGAGATTTTCACACGAGAAAATTGATACC 833
Query 812 GGGGAAAAAGTACGAGGTGGTGTTTCTTGTGAGGCTACATGATACATCTTTGGGATGGAA 871
|||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| |||||
Sbjct 834 AGGGAAAAAGTACGAGGTGGTGTTTATTGTGAGCCTAGATGACACATCTTTGGGGTGGAA 893
Query 872 GAATGACGTGACCCTGACGCTGAAGCTGGTCATGGGTGATAAAACCGGAAATGAGAAAGA 931
|||||| |||||||||||||||||| |||| ||| ||||| || ||| |||| |||||
Sbjct 894 GAATGAAGTGACCCTGACGCTGAAGGTGGTTATGAGTGATGAAGCCGCTAATGTGAAAGC 953
Query 932 GAA-AAAGTTGTGCTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCTTGTCGGAG 990
||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 954 GAAGAAA-TTGTGTTTGGACGAATACATAGGAGAAAATTGGGTGGATATTCCTGTTGGAG 1012
Query 991 AATTTGAGGCGCCGCCAA-AGAAAGATGACGCAAAGATCTTTTTCTCGATGTCTCAG-TA 1048
| |||||||| |||| || ||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1013 ACTTTGAGGCACCGC-AAGAGAAAGAGGACGCAAAGATCTTTTTCTCGATGTATCAGCTT 1071
Query 1049 TGTGGACACTGACAAGAAGAGTGGTCTTGTTGTCAAAGGTTTTGCAATTCGTCCAGCGTA 1108
| || ||||||| | |||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1072 T-TGAACACTGAGAGGAAGAGTGGTCTTGTTGTCAAAGGCTTTGCAATTCGTCCAGCGCA 1130
Query 1109 GTGAGGCACAAAAGCAAAGCATATTGGATCAAATTTCTGCTTTAACTATGTTTATATAAC 1168
|| |||||||||| |||||||||||||||| |||||||| || |||||| ||||||||||
Sbjct 1131 GTAAGGCACAAAACCAAAGCATATTGGATCTAATTTCTG-TT-AACTATATTTATATAAC 1188
Query 1169 TTCATTTTATGGTTTAAAGTTTGTACTCtttttttttttttttttGTAAGTCAGAGTCTG 1228
|| | ||||||||||||||||||| | ||||||||| | |||||||||||||||
Sbjct 1189 CTC-TATTATGGTTTAAAGTTTGTAAT-TTTTTTTTTCCT-----GTAAGTCAGAGTCTG 1241
Query 1229 TAC 1231
|||
Sbjct 1242 TAC 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5