BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494484

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45010.1 | Symbols: ATDSS1(V), DSS1(V) | DSS1 homolog on chr...   444    4e-124
  AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor 1(...   267    9e-71 


> AT5G45010.1 | Symbols: ATDSS1(V), DSS1(V) | DSS1 homolog on chromosome 
V | chr5:18167244-18168374 REVERSE LENGTH=582
Length=582

 Score =  444 bits (240),  Expect = 4e-124
 Identities = 376/435 (86%), Gaps = 35/435 (8%)
 Strand=Plus/Plus

Query  4    TTTTCTCGATCTGGTTGA-TTGCTTTAACCATCTGTAACTATGGCGGCAGAACCCAAGGC  62
            |||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct  115  TTTTCTCGATCTGGTTGATTTGC-TTAAACATCTGTAACTATGGCGGCAGAACCCAAGGC  173

Query  63   GGCGGTTGAAGTAGTAAAGGTGGATCTGTTCGAGGACGACGATGAGTTCGAGGAATTTGA  122
             || || ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  174  AGCTGTCGAAGTGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGA  233

Query  123  AATCAACGAAGATTCGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGA  182
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  234  AATCAACGAAGATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGA  293

Query  183  TGACTGGGATGATGATGATGTTAATGACGACTTCTCCCGTCAGTTAAGGAAGGAGCTTGA  242
            ||||||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct  294  TGACTGGGATGATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGA  353

Query  243  GAATGGTAGTGAGAAGAAATGAGGTCCAAGATTGTGA-AA-GGCTGGTCTTCACATTTAG  300
            ||||| |||||||||||||||||||||||||||| || || ||| ||||||| |||||||
Sbjct  354  GAATGCTAGTGAGAAGAAATGAGGTCCAAGATTGCGAGAAAGGCAGGTCTTCTCATTTAG  413

Query  301  G-AAC-----------------A-T--C--C-TTTGGTTTATGGCTAGCACGTATCGGTT  336
            | |||                 | |  |  | |||||||||| | ||||| |||||||||
Sbjct  414  GGAACCTTGGCTTTTTTGTTTGAATTGCATCCTTTGGTTTATCG-TAGCATGTATCGGTT  472

Query  337  CTCCTTTTCCTTTGCACATTTTACTCTT----GGATGCAGATTCCTTC-TCTTTGAAGAT  391
            ||||||||||||| |||||| |||||||    ||||||| ||| || | |||||||||||
Sbjct  473  CTCCTTTTCCTTTACACATTATACTCTTCCTTGGATGCAAATTTCT-CGTCTTTGAAGAT  531

Query  392  GATAAATTTGAACTG  406
            ||||||||||| |||
Sbjct  532  GATAAATTTGAGCTG  546


> AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor 
1(I) | chr1:24052362-24053908 REVERSE LENGTH=879
Length=879

 Score =  267 bits (144),  Expect = 9e-71
 Identities = 172/185 (93%), Gaps = 3/185 (2%)
 Strand=Plus/Plus

Query  132  AGATTCGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGATGACTGGGA  191
            ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  322  AGATTGGTTGGAGAAAGAAGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGATGACTGGGA  381

Query  192  TGATGATGATGTTAATGACGACTTCTCCCGTCAGTTAAGGAAGGAGCTTGAGAATGGTAG  251
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  382  TGATGATGATGTCAATGACGACTTCTCACGTCAGTTAAGGAAGGAGCTTGAGAATGGTAC  441

Query  252  TGAGAAGAAATGAGGTCCAAGATTGTGAAAGGCTGGTCTTCACATTTAGGAACATCCTTT  311
            ||| ||||||| ||||| ||||||||||||| | |||||||||||||||||| ||| || 
Sbjct  442  TGACAAGAAATAAGGTCGAAGATTGTGAAAGACAGGTCTTCACATTTAGGAA-ATC-TT-  498

Query  312  GGTTT  316
            |||||
Sbjct  499  GGTTT  503


 Score =  176 bits (95),  Expect = 1e-43
 Identities = 123/136 (90%), Gaps = 3/136 (2%)
 Strand=Plus/Plus

Query  1    AGGTTTTCTCGATCTGGTTGATTGCTTTAACCATCTGTAACTATGGCGGCAGAACCCAAG  60
            ||||| |||||||||||||| || ||||||| |||||||||||||||||||||||| |||
Sbjct  65   AGGTTATCTCGATCTGGTTGGTTCCTTTAACAATCTGTAACTATGGCGGCAGAACCGAAG  124

Query  61   GCGGCGG-T--TGAAGTAGTAAAGGTGGATCTGTTCGAGGACGACGATGAGTTCGAGGAA  117
            || |||  |  ||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct  125  GCAGCGACTGCTGAAGTAGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAA  184

Query  118  TTTGAAATCAACGAAG  133
            |||||||| |||||||
Sbjct  185  TTTGAAATTAACGAAG  200



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5