BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494489
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44950.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1844 0.0
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 250 3e-65
AT1G31983.1 | Symbols: | pseudogene, hypothetical protein | ch... 219 8e-56
> AT5G44950.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18151665-18153164 FORWARD LENGTH=1317
Length=1317
Score = 1844 bits (998), Expect = 0.0
Identities = 1226/1333 (92%), Gaps = 27/1333 (2%)
Strand=Plus/Plus
Query 1 ATGGGGCGCGATAGAATAAGCGAATTGCCGGATGGTTTGCTAAATCATATACTCATGTAC 60
|||||||||||||| || |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGCGCGATAGGATCAGCGAATTACCAGATGGTTTGCTAAATCATATACTCATGTAC 60
Query 61 CTTCACATAGAAGAATCTATTAGGACAAGCGTTTTATCTAGCAGATGGAG-AGACATCTG 119
|||||||| |||||||||||||||||||| |||||||||||||||||||| | || ||||
Sbjct 61 CTTCACATCGAAGAATCTATTAGGACAAGTGTTTTATCTAGCAGATGGAGAAAAC-TCTG 119
Query 120 GCTTAAGGTACCTGGGCTTGACCTAAATTTATTTGACTTCCCTGCTCATGGAGTA-TTAT 178
||||||||||||||| |||||| | || || ||||||||||||| ||||| | ||||
Sbjct 120 GCTTAAGGTACCTGGTCTTGACGTGAACGTACATGACTTCCCTGCTGATGGA-AACTTAT 178
Query 179 TTGGGAGCTTGATGGACAAGTTTCTTGAGGTTAACAGCGGACGCCTACAAAAGTTCAAGT 238
||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 179 TTGAGAGCTTGATGGACAAGTTTCTTGAGGTTAACCGCGGACGCCTACAAAATTTCAAGT 238
Query 239 TAAAGTATGAAAATGAACCATATTATTAT-TATTATCTAA-GCGACAGATTTGTGCCGTG 296
|||| |||| ||| | || ||| | |||||||||| | |||||||||||||||||
Sbjct 239 TAAACTATG-AAA-G-----TA--ATT-TGTATTATCTAATG-GACAGATTTGTGCCGTG 287
Query 297 GATCGCTACAGTTGTTGATCGCGGTATTCAGCATCTAGATGTTACGACCAC-GAATAATG 355
|||||||||||| ||||||||||||||||||||||||||||||||| |||| | || |
Sbjct 288 GATCGCTACAGTCGTTGATCGCGGTATTCAGCATCTAGATGTTACGGCCACTG-ATTGTC 346
Query 356 CTCCAAT-GACCATTGATTTTATGCCTTCCAACATTTTCAAGAGCAAGACGTTGGTGTCT 414
|||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 347 CTCC-ATGGACCATTGATTTTATGCCTGCCAACATTTGCAAGAGCAAGACGTTGGTGTCT 405
Query 415 TTAAAACTCGTAAATGTAGGGCTTGACAATCCAAAGTTTGTTGTGTCTTTACCTTGTCTC 474
||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 406 TTAAAGCTCGTAAATGTAGGGCTTGACACTCCAAAGTTTGTTGTTTCTCTACCTTGTCTT 465
Query 475 AAGATCATGCATCTTGAAGACATTTTTTATAGTCCTTTGATTGTGGAGAAGCTCCTCTCA 534
||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 466 AAGATCATGCATCTTGAAGACATTTTTTATAGTCCTTTGATTGCGGAGAACCTCATCTCA 525
Query 535 AGCTGTCCTGTTCTTGAAGATCTTACCATTGTAAGAAACCATGAAGATTTT-TTCAACTT 593
|||||||||||||||||||||||||||||||||| || ||||| |||||| || |||||
Sbjct 526 GGCTGTCCTGTTCTTGAAGATCTTACCATTGTAAGGAATCATGAGGATTTTCTT-AACTT 584
Query 594 TCTGCTTGTGAGGTCTCAAACTTTGAAGACCTTCCGTTTAACATTTGATTGGGAAATGGG 653
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 585 TCTGCGTGTGATGTCTCAAACTTTGAAGAACTTCCGTTTAACATTTGATTGGGGAATGGG 644
Query 654 TAGT-ACAGATTTTTCGGTCGAGATTGATGCTCCAGGACTTAAGTACATGAGCTTTAGAG 712
|||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 645 TAGTAAC-GATTTTTCGGTCGAGATTGATGCACCAGGACTTAAGTACATGAGTTTTAGAG 703
Query 713 ATAGTCAATCTGATAGAATCGTTGTAAAGAATTTGAGCTCCTTGGTCAAGATAGACCTTG 772
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 704 ATAGTCAATCTGATAGAATAGTTGTAAAAAATTTGAGTTCCTTGGTCAAGATAGACCTTG 763
Query 773 ATACTGAATTTAATCTCAAGTTTGGCCTCGGCAGTCCTTTGGAACCGGAGGACTTGACCA 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 764 ATACTGAATTTAATCTCAAGTTTGGCCTCGGCAGTCCTTTGGAACCGGAGGACTTGACTA 823
Query 833 AGAGAGATATTATCCGAGATTTTCTTACCGGTATTTCAAGTGTAAAACATATGATCATCT 892
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 824 AGAGAGATATTATCCGAGATTTTCTTACCGGTATTTCGAGTGTCAAACATATGATCATCT 883
Query 893 CCCATCCTACTCTGGAGGTGCTTTATCGATATTCCAAACTCGGACCGCTTCCAAAATTCC 952
| |||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 884 CTCATCCTACTCTGGAGGTGCTTTATCGTTATTCCAAAATCGGACAGCTTCCAAAATTCC 943
Query 953 ATAACTTATATCATTTGCGGGCTGCGTTCTCCAGCTTATTGTTACCACTATTGTCCGACT 1012
|||||||||||||||||| |||| ||||||||||| |||||||| ||||||| ||| ||
Sbjct 944 ATAACTTATATCATTTGCAAGCTGTGTTCTCCAGCTCATTGTTACAACTATTGCCCGCCT 1003
Query 1013 TCCTTGAAATCTGCCCAAATCTTAAAAACCTCATCTTGGACTATTCTGTTTCAGCGGAGC 1072
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 1004 TCCTAGAAATCTGCCCAAATCTAAAAAACCTCATCTTGGACTATTCTATTTCAGCAGAGC 1063
Query 1073 CAGAGCAAATCGACTTTACAAATGTGCCTCAGTGTTTAATATT-GACGTTGGAATATGTT 1131
||||||||||||||||||| ||| |||||| ||||||||| || |||| |||| || |||
Sbjct 1064 CAGAGCAAATCGACTTTACCAATCTGCCTCGGTGTTTAAT-TTCGACGCTGGAGTACGTT 1122
Query 1132 GAGATTAAAGAACTTACTATGAGGGAGGAAACTGGGATTAAATTGGTGAACTACTTTCTT 1191
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1123 GAGATTAAACAACTTACTATGAGGGAGGAAAGTGGGATTAAATTGGTGAAATACTTTCTT 1182
Query 1192 GAGAATTCAGCAGTCCTAAAGAAACTGACTCTAAGTTTCATAGATTCTCCCATGACCAAC 1251
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1183 GAGAATTCAGCAGTCCTCAAGAAACTGACTCTGAGTTTCATAGATTCTCCCATGACCAAC 1242
Query 1252 CAAGAGTCAGAGATCTACATGCAGCTTCTTACCTCCACAAAACGATCTCGTGGGTGTCAA 1311
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1243 CAAGAGTCAGAGATCTACATGCAGCTTCTTACATCAACAAAACGATCTCGTGGGTGTCAT 1302
Query 1312 GTTTTGATCTTAT 1324
|||||||||||||
Sbjct 1303 GTTTTGATCTTAT 1315
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 250 bits (135), Expect = 3e-65
Identities = 656/892 (74%), Gaps = 98/892 (11%)
Strand=Plus/Plus
Query 385 AACATTTTCAAGAGCAAGACGTTGGTGTCTTTAAAAC-TCGTAAATGTAGGGCTT-GACA 442
||||||| |||||||||||| ||||| ||||| || | || | || |||| | || | |
Sbjct 454 AACATTTACAAGAGCAAGACATTGGTCTCTTTGAAGCTTCAT-AACGTAGAG-TTAAAGA 511
Query 443 ATCCAAAGTTTGTTGTGTCTTTACCTTGTCTCAAGATCATGCATCTTGAAG-ACATTT-T 500
|| || | |||||||| ||| ||||||||||||||||| || | | || || | |||| |
Sbjct 512 ATTCAGACTTTGTTGTTTCTCTACCTTGTCTCAAGATCTTGAAAC-TGGAGAATATTTGT 570
Query 501 -----T---TATAGTCCTTTGATTGTGGAGAAGCTCCTCTCAAGCTGTCCTGTTCTTGAA 552
| || |||||||| |||||||||||||| ||||| | ||| |||||||||||
Sbjct 571 CACGGTGAGGATGGTCCTTTGGTTGTGGAGAAGCTCATCTCAGGATGTTCTGTTCTTGAA 630
Query 553 GATCTT-A-C-CATT--G-----T-A-A-GA-AAC-CATGAAGATTTTTTCAACTTTCTG 597
|||||| | | ||| | | | | | || ||| || | || ||| | |||||
Sbjct 631 GATCTTGAGCTGATTAGGCCTTTTGATATTAGGACACAT-AA-AGTTCTTCTGC-TTCTG 687
Query 598 CTTGTGAGGTCTCAAACTTTGAAGA-CCTT-CCGTTTAACATTTGATTGGGA---A-ATG 651
| |||||| ||||| ||| |||| | | || || || ||| || ||| || | | |
Sbjct 688 CGTGTGAGCTCTCAGACTCTGAAAAGCTTTACC--TT-ACA-TT--TTGCGATCTATAAG 741
Query 652 GGTAGTACAGATTTTTCGGTCGAGATTGATGCTCCAGGACTTAAGTACATGAGCT-TTAG 710
| | ||||||||||||| || ||||||||||||||| |||| ||||| |||| || || |
Sbjct 742 GATCGTACAGATTTTTCAGTTGAGATTGATGCTCCAAGACTCAAGTATATGA-CTGTT-G 799
Query 711 -AGATAGTCAATCTGATAGAATCGTTGTAAAGAATTTGAGCTCCTTGGTCAAG-ATAGAC 768
| | |||||||||||||| || || |||||||| |||| |||||| || || || |||
Sbjct 800 AACAGAGTCAATCTGATAGCATTGTGGTAAAGAACCTGAGTTCCTTGTTC-AGCATCGAC 858
Query 769 CTTGATACTGAATTTAATCTCAAGTTTGGCCTCGGCAGTCCTTTGGAACCGGAGGACTTG 828
||| |||| ||||||||| | || | | || | | || | | |||| ||
Sbjct 859 ATTGGTACTAAATTTAATC-C----TT----T--G-AGACATGAGG-ATCTAAGGA--TG 903
Query 829 ACCAAGAGAGATATTATCCGA-GATTTTCTT-ACCGGTATTTCAAGTGTAAAACATATGA 886
| | | || || | | | |||||| || ||||| || || ||||||||||||||||
Sbjct 904 --C--G-TA-ATGTT-TTCTACGATTTT-TTAACCGGGATATCTAGTGTAAAACATATGA 955
Query 887 TCATCTCCCATCCT--A--CTCTGGAGGTGCTTTATCGATATTCCAAACTCGGACCGCTT 942
|||||| | | | ||| ||||| ||| || ||||| |||| ||||| | ||
Sbjct 956 TCATCT--GTTTGTGGAGTCTCCAGAGGT--TTTCTCCTTATTCAAAACCCGGACTGATT 1011
Query 943 CCAAAATTCCATAACTTATATCATTTGCGGGCTGC-GTTCTCCAGCTTATTGTTAC-CAC 1000
|| |||||||| ||||| |||||||| || | | | | |||| | | || |||
Sbjct 1012 CCCAAATTCCAGAACTTGTATCATTTAAAAGC-ACAGATGTGGAGCTCA-T-CAACACAC 1068
Query 1001 -TATTGTCCGAC-TTCCTTGAAATCTGCCCAAATCTTAAAAACCTCATCTTGGACTATTC 1058
||||| | | || ||||| | |||||||||||| ||||||||||||||||| |||
Sbjct 1069 TTATTGGAAG-CGTTTCTTGAGAGCTGCCCAAATCTGAAAAACCTCATCTTGGAATATAA 1127
Query 1059 TGTTTCAGCGGAGCCAGAGCAAATCGACTTTACAAATGTGCCTCAGTGTTTAATATTGAC 1118
|||| | ||| | ||||||| | |||||||| || |||||||| |||||||||| |||
Sbjct 1128 TGTTGAATTGGATCGAGAGCAAGTGGACTTTACCAACGTGCCTCAATGTTTAATATCGAC 1187
Query 1119 GTTGGAATATGTTGAGATTAAAGAACTTACTATGAGGGAGGAAACTGGGATTAAATTGGT 1178
| |||| ||||||||||||||||||| | |||| || ||| | ||||||| | ||
Sbjct 1188 GCTGGAGTATGTTGAGATTAAAGAACCGA--ATGA--GA--AAAGTACGATTAAACTAGT 1241
Query 1179 GAACTACTTTCTTGAGAATTCAGCAGTCCTAAAGAAACTGACTCTAAGTTTC 1230
|||||||||||||||||||||||||||||| |||||||| |||||| |||||
Sbjct 1242 GAACTACTTTCTTGAGAATTCAGCAGTCCTCAAGAAACTTACTCTACGTTTC 1293
> AT1G31983.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11501674-11503237 REVERSE LENGTH=1564
Length=1564
Score = 219 bits (118), Expect = 8e-56
Identities = 496/667 (74%), Gaps = 71/667 (11%)
Strand=Plus/Plus
Query 281 ACAGATT-TGTGCCGTGGATCGCTACAGTTGTTGATCGCGGTA-TTCAGCATCTAGATG- 337
||||||| | || ||||||||| || | ||||||||||| | |||| ||||||||||
Sbjct 199 ACAGATTCT-TGGAGTGGATCGCCACTGCGGTTGATCGCGG-AGTTCAACATCTAGATGC 256
Query 338 TTACGACCACGAATAATGCTCCAATGACCATTGATTTTATGCCTTCCAACATTT-TCAAG 396
| | || || |||| || | | || | | || || |||||| || |||| | |||
Sbjct 257 TGA-GAACAAGAATCCTG-T-C-ATTATTAAAGAATTCATGCCTAAGAAGATTTAT-AAG 311
Query 397 AGCAAGACGTTGGTGTCTTTAAAACTCGTAAATGTAGGGCT--TG-A-CAATCCAA-AGT 451
|||||||| ||||| |||||||| || | |||||| ||| | || | | || ||| ||
Sbjct 312 AGCAAGACATTGGTTTCTTTAAAGCTTGCAAATGTTGGGATAATGAAGC-AT-CAAGAGC 369
Query 452 TTGTTGTGTCTTTACCTTGTCTCAAGATCATGCATCTTGAAGACATTTTTTAT-A-G-T- 507
||||||| ||||||||||||||||||||||||||||| || || ||| ||| | | |
Sbjct 370 TTGTTGTTTCTTTACCTTGTCTCAAGATCATGCATCTCAAAAACGTTTATTACGACGATG 429
Query 508 --CCTTTGA---TTGTGGAGAAGCTCCTCTCAAGCTGTCCTGTTCTTGAAGA-TCTTACC 561
|| | || || ||||||||||||| | | || ||||| |||||||| | ||||
Sbjct 430 GTCCGTCGAAGATTACAGAGAAGCTCCTCTTAGGATGCCCTGTCCTTGAAGAAT-TTACT 488
Query 562 ATTGTAAGA---AACCATGAAGATTTT------T-TCAA-CT-TTCTGCTTGTGAGGTCT 609
|| || ||| || || |||| | | ||| || |||||| ||| ||||||
Sbjct 489 ATGGTGAGAGGTAATTATTTTGATTATGAAGAATCTCAGTCTATTCTGCGTGTAAGGTCT 548
Query 610 CAAACTTTGAAGACCTTCCGTTTAACATT-TGATTGGGAAATGGGTAGTACAGATTTTTC 668
|||||| |||||| ||| ||||||| || | | |||| |||| |||||||| ||||||
Sbjct 549 CAAACTCTGAAGATCTTTTGTTTAACGTTCT-ACTGGGGAATGTATAGTACAGTTTTTTC 607
Query 669 GGTCGAGATTGATGCTCC-AGGACTTAAGTACATGAGCTTTAGAGATAGTCAATCTGATA 727
|| ||||| ||||| || || ||| ||||| ||||| ||| ||| | ||||
Sbjct 608 AGTTGAGATCGATGCCCCGAG-ACTCAAGTATATGAG-TTT-----TAG--A----GATA 654
Query 728 GAATCGTTGTAAAGAATTTGAGCTCCTTGGTCAAGATAGACCTTGA-TACTGAATTTAAT 786
| | | |||||||||||||| ||||||||||| |||||||| || | |||| ||||||
Sbjct 655 G--T-G--GTAAAGAATTTGAGTTCCTTGGTCAAAATAGACCTCGACT-CTGACTTTAAT 708
Query 787 CTCAA-GTTTGGC-CTCGGCAGTCCTTTGGAACCGGAGGACTTGACCAAGAGAGATATTA 844
|||| ||| | | || |||||||||||||||| ||| || | ||||||||||| |
Sbjct 709 GTCAATGTT-GACACT----AGTCCTTTGGAACCGGCGGATTTAAGTAAGAGAGATATAA 763
Query 845 TCCGAGATTTTCTTACCGGTATTTCAAGTGTAAAACATATGATCATCTCCCATCCTACTC 904
|||| || ||||| || |||||||| |||||| ||||||||||||| | ||| |||||
Sbjct 764 TCCGTGACTTTCTCACGGGTATTTCTGGTGTAAGACATATGATCATCACTAATCTTACTC 823
Query 905 TGGAGGT 911
| |||||
Sbjct 824 TAGAGGT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5