BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494490
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44930.1 | Symbols: ARAD2 | Exostosin family protein | chr5:... 610 1e-173
> AT5G44930.1 | Symbols: ARAD2 | Exostosin family protein | chr5:18138775-18142147
REVERSE LENGTH=2183
Length=2183
Score = 610 bits (330), Expect = 1e-173
Identities = 401/435 (92%), Gaps = 6/435 (1%)
Strand=Plus/Plus
Query 1149 AGATGATGCCGCTTTGAAACCGGGGTCTGTGGTTACGAAGTTAAGAAAAGTGAAACCAGA 1208
||| ||||||||||||||||| |||| |||||||| |||| | || |||||||||||||
Sbjct 1054 AGA-GATGCCGCTTTGAAACCAGGGTTTGTGGTTAAGAAGCTGAGGAAAGTGAAACCAGG 1112
Query 1209 AAAGATTTTAAAGTACCAAAAGGCTATGAAAGAGGTTAGGCGATATTTTGACTATACGCA 1268
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1113 AAAGATTTTGAAGTACCAAAAGGTTATGAAAGAGGTTAGGCGATATTTTGACTATACACA 1172
Query 1269 TCCAAACGGAAGTGTGAATGAGATCTGGAGACAAGTTACCAAGAAGATACCACTAATCAA 1328
|| ||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1173 TCTAAATGGAAGTGTGAACGAGATCTGGAGACAAGTTACTAAGAAGATACCGCTAATCAA 1232
Query 1329 ACTGATGATTAATCGTGAGAAGCGCATGATCAAGAGAGAAGGAAGTGACCTTCAATGTTC 1388
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1233 ACTGATGATTAATCGGGAGAAGCGCATGATCAAGAGAGATGGAAGTGACCCTCAATGTTC 1292
Query 1389 TTGTTTATGCTTAAACCAAACCGGGATCATCCATGGTGTTTAGTAATGTTAAATGCATAG 1448
||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||
Sbjct 1293 TTGTTTATGCTCAAACCAAACCGGGATCATCCATGGTGTCTAGTAAGGTTAAATGCCTAG 1352
Query 1449 CAAGCTCACGCTAAGCAACAAAATGTGATCATTATTAACGATGAATCAAAGACTGGAAAG 1508
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1353 CAAGCTCATGCTAAGCAACAAAATGTGATCATTATTAATGATGAATCAAAGACTGGAAAG 1412
Query 1509 GAACAACAAGAGAAACCACATCACTCTCTAATTCGGGGTCACCGGGTG-GA--A-GAATG 1564
|||||||||||||||||||||||||||||||||| |||||| |||| || | |||||
Sbjct 1413 GAACAACAAGAGAAACCACATCACTCTCTAATTCCGGGTCAA-GGGTTTGATCAAGAATG 1471
Query 1565 CGCATTTCCTGGTGG 1579
||| |||||||||||
Sbjct 1472 CGCGTTTCCTGGTGG 1486
Score = 520 bits (281), Expect = 2e-146
Identities = 395/447 (88%), Gaps = 19/447 (4%)
Strand=Plus/Plus
Query 403 GTGGGATCTTT-CTCCACA-CTTACCCGACCCGAAATTGAACGGGTCGGGTCACCGATTG 460
|||| |||||| || | | ||||||||||||||| || |||| |||||||| |||||||
Sbjct 318 GTGGTATCTTTACT-CGGATCTTACCCGACCCGAAGTTAAACGAGTCGGGTCTCCGATTG 376
Query 461 TCAGGGTTTTTGACCCTGCTGAGGCAGATTTGTTCTACGTTTCGGCTTTCTCTTC-TCTA 519
| |||||||||||||| |||||||| |||||||| ||||| || ||||||||||| | ||
Sbjct 377 TAAGGGTTTTTGACCCGGCTGAGGCGGATTTGTTTTACGTCTCTGCTTTCTCTTCGT-TA 435
Query 520 AGCTTGATTGTGAATTCGGGTCGACCCGAGTTTGGATCCGGGTTTGGGTATAGTGATGAG 579
|||||||||||| |||||||| | || ||||||||||||| |||||||||
Sbjct 436 AGCTTGATTGTGGATTCGGGT-----C------GG-CCCGGGTTTGGGTACAGTGATGAG 483
Query 580 GAGATGCAGGAGAGTTTGGTGAGTTGGTTGGAAGGTCAAGAGTGGTGGAGGAGGAACAAT 639
||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct 484 GAGATGCAGGAGAGTTTGGTGAGTTGGTTAGAAAGTCAAGAATGGTGGAGGAGGAACAAT 543
Query 640 GGGAGGGATCATGTGATTGTTGCTGGTGACCCGAATGCGTTGAGCCGGGTTATGGATCGG 699
||||||||||||||||||||||| ||||| || |||||||||| ||||| |||||||||
Sbjct 544 GGGAGGGATCATGTGATTGTTGCCGGTGATCCAAATGCGTTGAAACGGGTCATGGATCGG 603
Query 700 GTTAAGACTGCGGTTTTGCTTGTGACGGATTTTCGTC-GGTTTAGAGCTGACCAAGGGTC 758
||||||| ||||||||||||||||||||||||| | | |||| ||||| |||||||||||
Sbjct 604 GTTAAGAATGCGGTTTTGCTTGTGACGGATTTT-GACCGGTTAAGAGCAGACCAAGGGTC 662
Query 759 CCTTGTGAAAGACGTAATAATACCTTATTCTCATAGGGTTGATGCTTATGAAGGCGAGCT 818
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 663 GCTTGTGAAAGACGTAATCATACCTTATTCTCATAGGATTGATGCTTATGAAGGCGAGCT 722
Query 819 TGGAGTTAAGCAGAGGAACAACTTGTT 845
||||||||||||||||| |||||||||
Sbjct 723 TGGAGTTAAGCAGAGGACCAACTTGTT 749
Score = 460 bits (249), Expect = 1e-128
Identities = 290/310 (94%), Gaps = 2/310 (1%)
Strand=Plus/Plus
Query 16 AACCCCAAAATCAGAAAACCCAATAATTCATCTTCAAAGAAGGTCACAgttt-cgtttct 74
||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 7 AACCCCAAAATCAGAAAACCCAATAATTCATCTTCGAAGAAGGTCACAGTTTCCG-TTCT 65
Query 75 ctctgttttctttgttttcgtcttcgttaatactttcttctacccaagtttttACTCTGA 134
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTCTGTTTTCTTAGTGTTCGTCTTCGTTAATACTTTCTTCTACCCAAGTTTTTACTCTGA 125
Query 135 TTCTGGCTCAATTCGTCGCAATCTCGTCGATTCTCGAGAAAGTTTTGATTTTCCTGAAAA 194
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||| | |||
Sbjct 126 CTCTGGCTCAATTCGACGCAATCTCGTTGATTCTCGAGAAAGTTTCCATTTTCCGGGAAA 185
Query 195 ATTGCGTAAAACGAAGGTTTACATGTACGACTTGCCGACGAATTTTACTCACGGAGTTAT 254
|| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 186 TTTTCGTAAAACGAAGGTTTACATGTACGAATTGCCGACGAATTTTACTTACGGAGTTAT 245
Query 255 CCAGCAACACGGAGGAGAGAAATCTGATGACGTAACCGGGTTGAAATATCCGGGTCATCA 314
| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 246 CGAGCAACACGGCGGAGAAAAATCTGATGACGTCACCGGGTTGAAATATCCGGGTCATCA 305
Query 315 GCATATGCAT 324
||||||||||
Sbjct 306 GCATATGCAT 315
Score = 353 bits (191), Expect = 3e-96
Identities = 229/247 (93%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 909 CAAATATGGAGGCAGGGTCCGAGATTTGCTTTTCAAGCTTCTTGAGAACGAAGAGGATGT 968
|||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 774 CAAAGATGGAGGCAAAGTCCGAGATTTGCTTTTCAAGCTGCTTGAGAAAGAAGAGGATGT 833
Query 969 TGTGATCAAACACGGAACACAATCAAGAGAGAATAGGCGTGCGGCTAAACAAGGAATGCA 1028
||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 834 TGTGATCAAACGCGGAACACAGTCAAGAGAGAATATGCGTGCGGTTAAACAAGGAATGCA 893
Query 1029 TACGTCTAAGTTTTGTCTACAT-TCAGCTGGTGATACT-CATTCAGCTTGCAGATTATTT 1086
|||||||||||||||||||||| | ||||||||||||| | ||| |||||||||||||||
Sbjct 894 TACGTCTAAGTTTTGTCTACATCT-AGCTGGTGATACTTC-TTCTGCTTGCAGATTATTT 951
Query 1087 GATGCCCTTGCCAGTTTATGTGTCCCTGTGATTGTAAGCGATGGCATTGAGCTACCTTTT 1146
|||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 952 GATGCCATTGCTAGTTTATGTGTCCCGGTGATTGTAAGCGATGGGATTGAGCTACCTTTT 1011
Query 1147 GAAGATG 1153
|||||||
Sbjct 1012 GAAGATG 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5