BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494496

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44850.1 | Symbols:  | Protein with RNI-like/FBD-like domain...   272    4e-72


> AT5G44850.1 | Symbols:  | Protein with RNI-like/FBD-like domains 
| chr5:18108304-18109593 FORWARD LENGTH=996
Length=996

 Score =  272 bits (147),  Expect = 4e-72
 Identities = 191/212 (90%), Gaps = 4/212 (2%)
 Strand=Plus/Plus

Query  517  CTTGTGCGTTATAGCACTATCAACTTCTCTCGACTTACAGAGTTAGTAATCTGTCCAGAT  576
            ||| |||||| |||| ||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct  577  CTTTTGCGTTGTAGCGCTATCAACTTCTCTCGACTTACAGAGTTAATAATTTGTCCGGAT  636

Query  577  AAATCAGACTGGATGGAACCACTCCTACTTTTACTTGGAAATTCTCCAAAACTCAAAAAG  636
             ||||||||||| ||||||||||| | |||||||||||||| |||||||| || ||||| 
Sbjct  637  GAATCAGACTGGTTGGAACCACTCATGCTTTTACTTGGAAAATCTCCAAAGCTAAAAAAA  696

Query  637  CTTTTGGTTGATTATGTAGGGACCAACCGAAACCCCCGAGGATCTCCCACTTGCATGGAA  696
            |||| |||||||||  |  ||||||||||||| ||||||||||||||||||| |||||||
Sbjct  697  CTTTCGGTTGATTA--T--GGACCAACCGAAAACCCCGAGGATCTCCCACTTTCATGGAA  752

Query  697  CGAACCGAGTTCAGTTCCTGGTTGCTTGTCTT  728
            ||||||||||||||||||||||||||||||||
Sbjct  753  CGAACCGAGTTCAGTTCCTGGTTGCTTGTCTT  784


 Score =  250 bits (135),  Expect = 2e-65
 Identities = 166/181 (92%), Gaps = 1/181 (1%)
 Strand=Plus/Plus

Query  57   AAGAGCACCTGTGTTAGACAGCTTGTGTATCAAACTCGGTCCACAATGTCCTGTTAATGT  116
            ||| ||||||||| || ||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct  85   AAG-GCACCTGTGCTACACAGCTTGTGTATCAAACTTGGTTCACAATGTCCTGTTGATGT  143

Query  117  TGATGTCGGAAAATGGGTTGCAAAGGCGGTTGATCGTTTTGTGCGTAAGCTAAAGTTTAA  176
            ||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  144  TGAAGTCGGCAAATGGGTTGCAAAGGCCGTTGATCGCTTTGTGCGTAAGCTAAAGTTTAA  203

Query  177  GCTTCTCTGGTCCGCAGATCTAATCAGCTTACCTAAGAGCCTTTATACATGCAAAATGCT  236
            |||||||||||||||||||| |||||||||||||||||||||||| |||||  ||| |||
Sbjct  204  GCTTCTCTGGTCCGCAGATCCAATCAGCTTACCTAAGAGCCTTTACACATGTGAAACGCT  263

Query  237  A  237
            |
Sbjct  264  A  264


 Score =  159 bits (86),  Expect = 3e-38
 Identities = 104/113 (92%), Gaps = 0/113 (0%)
 Strand=Plus/Plus

Query  782  GAGCAACAATCTCCCTAAGGTCTGCATTCAATCTTGAAGAGAAACAAAAGGTAATGGAGG  841
            ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||
Sbjct  884  GAGCAACAATCTCCCTAAGGTCTGCATTCAACCTTGAACAGAAACAAAAGGTGATGAAGG  943

Query  842  AATTAGAATCTATTCCTAGAGTTTCTAAGTCATCTCAGCTTCTTCTCAAGTGA  894
            |||| || || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct  944  AATTGGATTCAATTCCTAGAGTTTCCAAGTCATCTCAGCTTCTTCTCAAATGA  996


 Score =  128 bits (69),  Expect = 9e-29
 Identities = 82/88 (93%), Gaps = 2/88 (2%)
 Strand=Plus/Plus

Query  238  ATTTTCCTTCTTCTCCCAC--GCCTCCCATCCCTTAAAAAGCTCAACCTTATCAATGTGG  295
            ||||||||||||||||| |  |||||||||||||||||||||||||||| ||||||||||
Sbjct  299  ATTTTCCTTCTTCTCCCGCGTGCCTCCCATCCCTTAAAAAGCTCAACCTAATCAATGTGG  358

Query  296  TCTATACAGACGATGCTTCTCTCATTAG  323
            | |||| |||||||||||||||||||||
Sbjct  359  TTTATAAAGACGATGCTTCTCTCATTAG  386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43653473743


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5