BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494502
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44785.2 | Symbols: OSB3 | organellar single-stranded DNA bi... 2111 0.0
> AT5G44785.2 | Symbols: OSB3 | organellar single-stranded DNA
binding protein 3 | chr5:18070681-18073129 REVERSE LENGTH=1644
Length=1644
Score = 2111 bits (1143), Expect = 0.0
Identities = 1327/1414 (94%), Gaps = 19/1414 (1%)
Strand=Plus/Plus
Query 70 TAGTATGAAACAATGAATTTGATCTCAAGAACATTGACAAGAGTAGTGTCTTCGTCACTA 129
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 108 TAGTATGAAACAATGAATTTGATCTCAAGAACATTGACAAGAGCAGTGTCTTCGTCACTA 167
Query 130 TACCACTCAAGAGCAGCGAAACTCCCCACTCAAAAATGGGTAATCTCGCAGCAAATCCGC 189
|||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 168 TACCACTCAAAAGCAGCGAAGCTCCCCACTCAAAAATGGATAATCTCGCAGCAAATCCGT 227
Query 190 GTTTTCTCCGCCACCGTCATCGGAAGTGGAGGAAGGAAGCCT-TGGGCAAAAGCATCAGT 248
|||||||||||||| |||||| | ||||||||| ||| ||| | |||||||| ||| ||
Sbjct 228 GTTTTCTCCGCCACAGTCATCAGCGGTGGAGGAAAGAAACCTCT-GGCAAAAGTATCTGT 286
Query 249 GAAACCACCGCTAAATGCT-GCGGCGGAGAAAGAATCGACTCTGCCGAAGAGGATTGAGT 307
||||||||||||||||| | ||| |||||||||||||||||| ||| |||| |||||||
Sbjct 287 GAAACCACCGCTAAATG-TAGCGACGGAGAAAGAATCGACTCCGCCAAAGAAAATTGAGT 345
Query 308 ACAAGCCGGAAATTTCAAATTGGATCAACTTAATCGGATTCGTTGAACAACCAGTTCAAT 367
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 346 ACAAACCGGAAATTTCAAACTGGATCAACCTAATCGGATTCGTTGAACAACCAGTTCAAT 405
Query 368 TCGGTCCTTGCTCCGATGGAAAATTCTGGGCAGGAACTGTAATTTCGCAGCGTTCTGGTT 427
||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||
Sbjct 406 TCGGTCCTTGCTCCGATGGAAAATTCTGGGCTGGAACAGTTATTTCTCAGCGTTCTGGTT 465
Query 428 CAAAATCATCTAATTTCTGGATTCCGATAATATTCGAAGGAGATTTAGCTCAAATTGCAG 487
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 466 CAAAATCATCTAATTTCTGGATTCCGATTATATTCGAAGGAGATTTAGCTAAAATTGCAG 525
Query 488 TTCAACATGTAAAGAAAGAAGATCGGATTCATGTTTCTGGGAAGCTGTTTATTGATTCGC 547
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 526 TTCAACATGTAAAGAAAGAAGATCGGATTCATGTTTCCGGGAAGCTGTTTATTGATTCGC 585
Query 548 CTCCTCCAAATGTTACATATTCTCAATCCAATGTTCAGGTTATGGTTCAGAATCTTAACT 607
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CTCCTCCAAATGTGACATATTCTCAATCCAATGTTCAGGTTATGGTTCAGAATCTTAACT 645
Query 608 TCGTACAAGCTGAAACTTCTCCGGCTAAGACCATCTCACCACCTGAAAAAGAAGTAATCA 667
|||||||||||| |||||| || ||||||| ||||||||||||||||||||||| | ||
Sbjct 646 TCGTACAAGCTGCTACTTCTACGACTAAGACGATCTCACCACCTGAAAAAGAAGTTACCA 705
Query 668 GCACCAAGAAAAAGCCCGCAAGATCCAAAAAGGTTAAAGTCATAGATGAAGAAACCTCTA 727
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GCATCAAGAAAAAGCCCGCAAGATCCAAAAAGGTTAAAGTCATAGATGAAGAAACCTCTA 765
Query 728 ATTCTTGGAAGCACCTTATTGAAAATCCTAAAGAGTGGTTGGATCACCGTGGGAATAAAG 787
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 ATTCTTGGAAGCATCTTATTGAAAATCCTAAAGAGTGGTTGGATCACCGTGGGAATAAAG 825
Query 788 CTAACGGATTGGTAAAGCCAGGACATCCTGATTTCAAGATGAAGGTGGGTGGTTTGTCTC 847
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 826 CTAACGGATTGGTAAAGCCAGGACATCCCGATTTCAAGATGAAGGTTGGTGGTTTGTCCC 885
Query 848 TGTGGCTCAGCACAGCTCCTGATTGGGCTTTGCTAAAACTCGAAGAGCTTGAGTTTGATG 907
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 886 TGTGGCTCAGCACAGCTCCTGATTGGGCTTTGCTAAAACTCGAAGAGCTTAAGTTTGATG 945
Query 908 TCTTTGTCCCTAAAGGAAACATCAAACTGAATCAACTT----A-A-AGGAGAGGAATCTT 961
|||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 946 TCTTAGTCCCTAAAGGAAACATCAAACTGAATCAACTTAAAGATATAGGAGAGGAATCTT 1005
Query 962 GGAAGGATTTGGTTCAGAACCCAGATAAATGGTTAGACAACAGATTAGATAAGACAAACG 1021
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1006 GGAAGGATTTGGTTCAGAACCCAGACAAATGGTTAGACAACAGATCAGATAAGACAAACG 1065
Query 1022 TGAAATACCCTGACTTCAAGCATAAAGAGACTGGTGAAGCACTGTGGATGACCAATTCTC 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TGAAATACCCTGACTTCAAGCATAAAGAGACTGGTGAAGCACTGTGGATGACCAATTCTC 1125
Query 1082 CTATTTGGGTACTGTCAAAGTTACCACCTCTGAAGAAGAACCAAGAAAGACCTCTCATGT 1141
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1126 CTATTTGGGTACTGTCAAAGTTACCACCTCTAAAGAAGAACCAAGAAAGACCTTTCATGT 1185
Query 1142 CCAATACAGTCTCGCAGCTTGAGCTTGACGTTGTAGAACCTAATGGAAATCTGAAACAGC 1201
| |||| |||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 1186 CTAATAAAGTCTCGCAGCTTGAGCTTGACGTTGAAGTACCTAAAGGAAATCTGAAACAGC 1245
Query 1202 TTAAAAGAGAGGAA-TCTTGGAAGAACTTGGTTGAGAACCCGAGTAAATGGTGGGATAAC 1260
|||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1246 TTAAAAGAGAGGAAAT-TTGGAAGAACTTGGTTGAGAACCCCAGTAAATGGTGGGATAAC 1304
Query 1261 AGATTAGACAAGAGAAACCCGAAAGCCCCTGACTTCAAGCATAAAGAGACCGGTGAAGTA 1320
|||||||||||||||||||| |||| ||||||||| ||||| || ||||||||||||| |
Sbjct 1305 AGATTAGACAAGAGAAACCCTAAAGGCCCTGACTTTAAGCACAAGGAGACCGGTGAAGCA 1364
Query 1321 CTGTGGATAAATAATAATTCTCCGACTTGGGCACTGTCAAAGTTACCACCTCTAAAGAAG 1380
||||||||| | || | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1365 CTGTGGATAGGTGAT--T-CTCCGACTTGGGCGCTGTCAAAGTTACCACCTCTAAAGAAA 1421
Query 1381 AACCAAGAAAGACCTGTCATGGCCTA-GTTTGTCTCTCGCAGCCTTATGTTGATTTTGGC 1439
|||||||||||||||||||||||||| | || |||| ||||||||||||| ||||||||
Sbjct 1422 AACCAAGAAAGACCTGTCATGGCCTAAGCTT--CTCTAGCAGCCTTATGTTAATTTTGGC 1479
Query 1440 CACCCACTATGTAAAAAGGCCGTATGACTTTATT 1473
| ||||||||||||||||||| ||||||||||||
Sbjct 1480 C-CCCACTATGTAAAAAGGCCCTATGACTTTATT 1512
Score = 200 bits (108), Expect = 3e-50
Identities = 167/195 (86%), Gaps = 5/195 (3%)
Strand=Plus/Plus
Query 1208 GAGAGGAATCTTGGAAGAACTTGGTTGAGAACCCGAG-TAAATGGTGGGATAACAGATTA 1266
||||||||||||||||| | |||||| ||||||| || ||||||| || ||||||| |
Sbjct 994 GAGAGGAATCTTGGAAGGATTTGGTTCAGAACCC-AGACAAATGGTTAGACAACAGATCA 1052
Query 1267 GACAAGAGAAACCCGAAAGCCCCTGACTTCAAGCATAAAGAGACCGGTGAAGTACTGTGG 1326
|| |||| |||| |||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 1053 GATAAGACAAACGTGAAATACCCTGACTTCAAGCATAAAGAGACTGGTGAAGCACTGTGG 1112
Query 1327 ATAAATAATAATTCTCCGACTTGGGCACTGTCAAAGTTACCACCTCTAAAGAAGAACCAA 1386
|| | |||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1113 AT---GACCAATTCTCCTATTTGGGTACTGTCAAAGTTACCACCTCTAAAGAAGAACCAA 1169
Query 1387 GAAAGACCTGTCATG 1401
||||||||| |||||
Sbjct 1170 GAAAGACCTTTCATG 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5