BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494504
Length=2279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44780.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1426 0.0
> AT5G44780.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G20020.2);
Has 9661 Blast hits to 6233 proteins in 635 species: Archae
- 4; Bacteria - 1116; Metazoa - 4251; Fungi - 1510; Plants
- 1359; Viruses - 43; Other Eukaryotes - 1378 (source: NCBI
BLink). | chr5:18068060-18070654 FORWARD LENGTH=2322
Length=2322
Score = 1426 bits (772), Expect = 0.0
Identities = 988/1090 (91%), Gaps = 24/1090 (2%)
Strand=Plus/Plus
Query 1196 TACAACCAAGGTCAAGGAGCTCAGACGCCTCCATACCAAGGATTACCAAACAATTACAGT 1255
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 1145 TACCACCAAGGTCAAGGAGCTCAGACGCCTCCATACCAAGAATCACCAAACAATTACGGT 1204
Query 1256 CAAGGAGCATTTGTGCAATACAACCAAGGGCCACCGCAAGGAAACTTTATCCCAGGGACA 1315
||||||||||||||||||||||||||||||||||| ||||||||| || ||| | ||||
Sbjct 1205 CAAGGAGCATTTGTGCAATACAACCAAGGGCCACCACAAGGAAACGTTGTCCAAACGACA 1264
Query 1316 CAAGAAAATTACAGCCAAATGGGCC-AGAGGAGTTACACTCCACAGAGTGGTGGAAACTA 1374
|||||||| |||| ||||||||||| || ||| |||| ||||||||||||||||||||||
Sbjct 1265 CAAGAAAAATACAACCAAATGGGCCAAG-GGAATTACGCTCCACAGAGTGGTGGAAACTA 1323
Query 1375 TGGTCCTTCACATGGAGCAGGAAGTCTAGGATTTGGACATGGGCAAGGTCAAGGAGGTCA 1434
| ||||| |||| ||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1324 TAGTCCTGCACAAGGAGCAGGAAGTCCAAGATTTGGATATGGGCAAGGTCAAGGAGGTCA 1383
Query 1435 GTTATTGTCTCCATATCAAGGGAGTTACAACCAAGGCCAGGGAACTCCGCTGACAGGACA 1494
||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1384 GTTATTGTCTCCATATCGAGGGAATTACAACCAAGGCCAGGGAACTCCGCTGCCAGGACA 1443
Query 1495 AGGCCAAGAAGGTCAAATACCTTCATATCATATGGGTAACAGCCAAGGCTTAGGAGCTCC 1554
|||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||
Sbjct 1444 AGGCCAAGAAGGTC--A-ACCTTCATATCAGATGGGTTTCAGCCAAGGCTTAGGAGCTCC 1500
Query 1555 GGTGCCTCCGAACCAAGTAACACCAGGCAATTATGGTCAATGGGCATTTGTGAACTATAA 1614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1501 GGTGCCTCCGAACCAAGTAATACCAGGCAATTATGGTCAATGGGCATTTGTGAACTACAA 1560
Query 1615 CCAAGGACCGCCACATGGTAACTTTCTCCAAGGACCCCAACAAAATTACAATCAAGGAGG 1674
||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 1561 CCAAGGACCACCACAAGGTAACTTTCTCCAAGGACCACAACAAAATCACAACCAAGGAGG 1620
Query 1675 TCAATGGAATTACAGTCCACAGAACGGTGGACACTATGGTCCTGCACAGTTTGGACAGTG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TCAATGGAATTACAGTCCACAGAACGGTGGACACTATGGTCCTGCACAGTTTGGACAGTG 1680
Query 1735 GTATCATGGACCCCCTCAAGGTCAAGGAAATCAATGGCCTCAATATCAGCTTAGTTACAA 1794
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1681 GTATCCTGGACCCCCTCAAGGTCAAGGAATTCAATGGCCCCAATATCAGCTTAGTTACAA 1740
Query 1795 TCAAGGCCAAGGAACTCCATTTCCTGGACAATGTTTATGTCCAGGAT-GTGGAATGCCTT 1853
|||||||||||||||||||||| ||||||||||| ||||||| || |||||||| |||
Sbjct 1741 TCAAGGCCAAGGAACTCCATTTTCTGGACAATGTCGATGTCCAA-ATTGTGGAATGACTT 1799
Query 1854 CATATCAGGGG-AGTTACAATCAAGGCCAAGGAACTCATATCCATGGACAATTTCAAGGT 1912
|||| |||||| | | ||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1800 CATACCAGGGGTA-TAACAATCAAGGCCAAGGAACTCATATCCCTGAACAATGGGAAGGT 1858
Query 1913 CAAGGATG-TGCAATGCCTTCATATCAGGCGAGTTATAGTCACAGTCAA-GGAGTTCCGG 1970
|||| || |||| ||| |||||||||||| ||||| | ||| || | | |||| | ||
Sbjct 1859 CAAG-ATTATGCAGTGCTTTCATATCAGGCTAGTTACAATCA-AGCCCATGGAGCACAGG 1916
Query 1971 TTCCTCTGGTTCCTCCATACCATGGAAACTATAATCCAGGACCACCTAG-CAGTTACGGG 2029
| | |||||||||||||||||||| |||| || | |||| || | |||||||
Sbjct 1917 --C----G---CCTCCATACCATGGAAACTACAATCAAGCAACACC-AGGCGGTTACGGT 1966
Query 2030 CAAGGGACATCTACAAACATCAACCAAGGATTTCCAGTGAACCCAGCAAATTACAATATG 2089
||||| |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 1967 CAAGGAACATCTGCAAACTTCAACCAAAGATTTCCAGTGAACCCCGCAAATTACAATATG 2026
Query 2090 CAGAACGGTGGAAACTATGGTCCTCCACATGAATTAGCAGGAAATCCAGGATTTAGACAA 2149
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2027 CAGAACGGTGGAAACTATGGTCCTCCACATGGATTAGCAGGAAATCCAGGATTTAGACAA 2086
Query 2150 GGGTTTACTGGACAAGGACAGAATCAAACATTTCAACAAGAGGATCAGAGAAATGTAGCA 2209
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2087 GGGTTTTCTGGACAAGGACAGAATCAAACATTTCAACAAGACGATCAGAGAAATGTAGCA 2146
Query 2210 GGTGGCTTGAGCAACAATAATCCTGCAGACCCAACTGTAACCAGAAAACCAAATTCTCGA 2269
|||| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 2147 GGTGACTTGAGAAACAATAATCCTGTAGACCCAACTGAAACCAGAAAACCAAATTCTCGA 2206
Query 2270 ACATAAGCGA 2279
| ||||||||
Sbjct 2207 ATATAAGCGA 2216
Score = 1301 bits (704), Expect = 0.0
Identities = 938/1050 (89%), Gaps = 20/1050 (2%)
Strand=Plus/Plus
Query 1 TTCTCAATCTCCGGCATCAATGGCCATGCTCTCACACCGTCTCCGACGAGTTCTTATCGC 60
|||| ||||||||||||||||||||||| |||| || |||||||||||| | || ||||
Sbjct 22 TTCTAAATCTCCGGCATCAATGGCCATGTTCTCGCATCGTCTCCGACGAATAGTTGTCGC 81
Query 61 CGCACCTTCCTATTTCCAACGATCCTTCC-CTCTATCTCATCCCTCCGATTTCCCTCCCG 119
||||||||||||||||||||||| | ||| ||||||||| ||||||||||||| ||||||
Sbjct 82 CGCACCTTCCTATTTCCAACGATTC-TCCACTCTATCTCGTCCCTCCGATTTCACTCCCG 140
Query 120 TGTCATCTTTATTACCGAGATCTGTGGTGAAGCAGTCGACGG-AATTTGGTAAATCTCCG 178
|| |||| |||||||||||||||||||||||||| ||||||| || || | ||||||
Sbjct 141 TGCCATCGTTATTACCGAGATCTGTGGTGAAGCAATCGACGGCAA-TTAATCGATCTCCC 199
Query 179 GCGAGATTGTTCTCGACGACTCAGTATCAGTATGATCCGTACACTGGAGAAGATTCGTTC 238
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 200 GCGAGATTGTTCTCGACGACTCAGTATCAGTATGATCCATACACTGGAGAAGATTCTTTC 259
Query 239 ATGCCTGATAACGAAGGTTGTGATTTTAATCATTGGTTAATTACAATGAATTTCCCTAAA 298
||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 260 ATGCCGGATAATGAAGGATGCGATTTTAATCATTGGTTAATTACAATGAATTTCCCTAAA 319
Query 299 GATAATGTTCCATCTAGAGAAGAAATGATTTCGATTTTTGAGCAAACTTGTGCTAAAGGA 358
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 320 GATAATCTTCCATCTAGAGAAGAAATGATTTCGATTTTTGAGCAAACTTGCGCCAAAGGA 379
Query 359 CTTGATATAAGTTTGGAAGAAGCTAAGAAGAAAATATATGCAATTTGCACAACAAGTTAC 418
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 380 CTTGCTATTAGTTTGGAAGAAGCTAAGAAGAAAATTTATGCAATTTGCACAACAAGTTAC 439
Query 419 CAAGGGTTTCAAGCAACAATGACTATAGGAGAAGTAGAAAAATTTAGAGATTTGCCTGGG 478
||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 440 CAAGGTTTTCAAGCAACAATGACTATAGGAGAAGTAGAGAAGTTTAGAGATTTGCCTGGT 499
Query 479 GTTCAATACATAATTCCTGATTCTTATGCTGATGTTGAGAATAAGGTTTATGGAGGTGAT 538
|||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 500 GTTCAATACATAATACCTGATTCGTATATTGATGTTGAGAATAAGGTTTATGGAGGAGAC 559
Query 539 AAATACGAGAATGGAGTGATCACACCTGGTCAAATTCCTGTTCCTACTAAAGAAGGATTT 598
||||| ||||||||||||||||||||||| | ||||||| ||||||||||| || |||
Sbjct 560 AAATATGAGAATGGAGTGATCACACCTGGGCCTGTTCCTGTCCCTACTAAAGAGGGGTTT 619
Query 599 GATTCTCTAGAGAAGGAGAGTAAGCCGGAACTAGAGGAAGCTCAAATAATTCAAACGCCT 658
|||||| || ||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 620 GATTCTTTAAAGAAGGAGAGTAAGCCGGAACAAGAGGAAGCTGAAATAATTCTAACGCCT 679
Query 659 TCAGATGAGGGTAAAATCTCAGGACAAGTGCAAGATGAAGGAAGTCAAACGCCTCCAGAT 718
||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||||||
Sbjct 680 CCAGATGAGGGTAAAACCTCAGGACAAGTGCAAGGTCAAGGAAGTCTAACGCTTCCAGAT 739
Query 719 CAGAGGAGTGTCAAGCGAATG-CAAGGAGCTATTGATTTAGGACAAGGGCAAGGTCAAAG 777
||||||||||||||| ||| | |||||| || ||| | ||| |||||| |||||||||||
Sbjct 740 CAGAGGAGTGTCAAG-GAAAGACAAGGAACTCTTGCTCTAGTACAAGGCCAAGGTCAAAG 798
Query 778 AAGTCAAATGTCGATCCCTGGACAAGGGCAGGGTGAAGGAAGTCGAATGTCAATTCCAGG 837
|||| |||||| |||| |||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 799 AAGTGGAATGTCTATCCTTGGACAAGGGCAAGGTGAAGGAAGGCGAATGTCTATTCCTGG 858
Query 838 ACAAGGGCATAGTCGAGGTCAAGGAAATCGAATGCCTTTTATGCAAGGGGGTTTCAAGCA 897
|||| |||| |||||||||||||||||| | | ||| |||||| ||||||||||
Sbjct 859 ACAATGGCAAAGTCGAGGTCAAGGAAAT----T-CATTT----CAAGGGAGTTTCAAGCA 909
Query 898 GAGCCAGGGAACTCTGTCTGTAG-GACAAGGGCAAACTCAAAGAAGTGA--AA-TGCCTT 953
|||||||||||||||| | || | || ||||||||||||||| |||||| || | ||||
Sbjct 910 GAGCCAGGGAACTCTGCCCGT-GCGAAAAGGGCAAACTCAAATAAGTGATGAAATACCTT 968
Query 954 CATTCCAAGGAAATGTTAAACAAGGAGAAGAAATACCAATCAATGGACAATGGCAAGCTC 1013
| ||||||||||||||||| ||| || ||||||| |||||| |||||||| |||||||||
Sbjct 969 CGTTCCAAGGAAATGTTAAGCAAAGACAAGAAATGCCAATCCATGGACAAGGGCAAGCTC 1028
Query 1014 CACGAAGTCAAATGCCTTCATCTCAGGGGA 1043
|||||||||||||||||||||||||||||
Sbjct 1029 AACGAAGTCAAATGCCTTCATCTCAGGGGA 1058
Score = 132 bits (71), Expect = 2e-29
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1154 GGACAAGGGCAAGGAAGTCAAATACCTTCCAATCAGGTGGGTTACAACCAAGGTCAAGGA 1213
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1070 GGACAAGCTCAAGGAAGTCAAAGACCTTCCAATCAGGTGGGTTACAACCAAGGTCAAGGA 1129
Query 1214 GCTCAGACGCCTCCATACCA 1233
||||||||||||||||||||
Sbjct 1130 GCTCAGACGCCTCCATACCA 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113101827885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5