BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494505
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44760.1 | Symbols: | C2 domain-containing protein | chr5:1... 1807 0.0
AT4G20080.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 126 5e-28
> AT5G44760.1 | Symbols: | C2 domain-containing protein | chr5:18060586-18062764
FORWARD LENGTH=1437
Length=1437
Score = 1807 bits (978), Expect = 0.0
Identities = 1291/1440 (90%), Gaps = 30/1440 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGAGAACGACTTCTCTCTAAAAGAAACATGTCCCAAAATCGGCGGCGGAAGATCA 60
||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCAGAGCACGACTTCTCTCTTAAGGAAACATGTCCCAAAATCGGCGGCCGAAGATCA 60
Query 61 ATTCCCGGCGGTGAAATGCTGACGTCAACATTCGATCTCGTCGAACGAATGACATTTCTC 120
|||||||||||||| ||||| |||||| |||| || ||||||||||| ||||| || |||
Sbjct 61 ATTCCCGGCGGTGACATGCTAACGTCATCATTTGACCTCGTCGAACGCATGACCTTCCTC 120
Query 121 TACATCCGAATCGTTAAGGCTCGAGCTTTACCTTTTAATGACTTATTCGTTGAAGTCACA 180
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 121 TACATCCGAATCGTTAAGGCTCGAGCTTTACCTTCCAACGACTTATTCGTTGAAGTAACA 180
Query 181 ATCGGTAGCTACAAAGGAAGAACCAAACGTAACACAAACCCTAACCCTAATCCGGAGTTT 240
|||||||| |||||||||||||| ||||||| |||||||||| ||||||||| |||| ||
Sbjct 181 ATCGGTAGATACAAAGGAAGAACGAAACGTAGCACAAACCCTTACCCTAATCTGGAG-TT 239
Query 241 C-ACGAAGTTTTCGCCTTTAATAGTGATCGTCTCCAAGGAAATGTCTTGGAAGTGGCCAT 299
| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct 240 CGACGAAGTTTTCGCCTTTAATAGTGATCGTCTTCAAGGAAATATGTTGGAAGTGACCAT 299
Query 300 GAAGGTGAACGAAGAAGAGGTAATTGGAAAGTGTAGATTCGAAGTAGCTGAGATTCCAAC 359
|||| |||||||||||||| | |||||| ||||||||||||| || ||||||||||| ||
Sbjct 300 GAAGATGAACGAAGAAGAGATTATTGGACAGTGTAGATTCGAGGTGGCTGAGATTCCTAC 359
Query 360 ACGTGTCCCTCCGGATAGTCCATTGGCTCCACAATGGTATAGATTAGAAGATAGAAATGG 419
|||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 360 ACGTATCCCACCGGATAGTCCATTGGCTCCACAATGGGATAGGTTAGAAGATAGAAATGC 419
Query 420 GAACAGATTTGGAGGAGAGGTTATGTTATCTGTATGGATGGGGACACAAGCCGATGAAGT 479
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GAACAGATTTGGAGAAGAGGTTATGGTATCTGTATGGATGGGGACACAAGCCGATGAAGT 479
Query 480 TTTCCCTGAGGCTTGGCATTCGGATTCCGCTACGGTGACCGGAGAAAACGTGGTGATTAC 539
|| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||
Sbjct 480 TTGCCCTGAGGCTTGGCATTCGGATTCGGCTACAGTGACTGGAGAAAACGCGGTGATTGT 539
Query 540 GCGGTCTAAAGTGTATCTATCTCCGAGGCTATGGTATTTGCGAGTGAATGTTATTGACGC 599
|||||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||
Sbjct 540 GCGGTCTAAAGTGTATCTATCTCCGAGGTTATGGTATTTGCGAGTCAATGTTATAGAGGC 599
Query 600 TCAAGATTTGGTTCCGTTGCAAGCAAACAGAACGAATCTGGA-GTTCTTAGTAAAAGGG- 657
||||| |||||||| |||||||| ||||||||| |||| ||| ||| ||||||||||||
Sbjct 600 TCAAGTTTTGGTTCTGTTGCAAGGAAACAGAACAAATCCGGAGGTT-TTAGTAAAAGGGT 658
Query 658 TT-TACG---CG--G--ACAATGAGTCCGGTTT-G--GA-TTG-AGGAT-A-T-GA-TCT 700
|| || | | | | ||||| ||||| | || | | | || | | | | |
Sbjct 659 TTGTAGGAAATGTTGTTGTGAGGAGTCGGGTTTCGCAGAGTCGAACAATGAGTCCAGTTT 718
Query 701 T-GAA--A-GATA--AGGTAGGTCAAAAAGAAGAGTCTTTAGGTAGATGTGAGATAAAGT 754
| ||| | |||| | ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 719 TGGAACGAGGATATGATGTAGGTCAAAAAGAAGAGTGTTTAGGTCTATGTGAGATAAAGT 778
Query 755 TGTCTCAGGTTGAGAGACGGGTATTGCCCGGACCTGTACCGGCTCTATGGTACAACCTTG 814
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 779 TGTCTCAGGTTGAGAGACGGGTATTGCCGGGACCTGTACCGGCTCTATGGTATAACCTGG 838
Query 815 AGCGGGTCGGGGACTCAGGATTCGCAGGGAGGATTCATTTGCGGGTTTCATTGGACGGAG 874
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGCGCGTTGGGGACTCGGGATTCGCAGGGAGGATTCATTTGCGGGTTTCATTGGACGGAG 898
Query 875 GATACCATGTCCTCGACGAGTCGATTCAGTATAGCAGTGATTACAAAGCTTCTGCTAAGC 934
|||||||||| || || ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 899 GATACCATGTGCTTGATGAGTCGATTCAGTATAGCAGTGACTACAGAGCTTCTGCTAAGC 958
Query 935 TTTTATGGACTCCAGCTATTGGTGTGTTGGAGCTTGGAGTCAACAGTGCATCCGGTTTGA 994
|| ||||||||||| |||||||||| |||| ||| ||||||| ||||||||| |||| ||
Sbjct 959 TTCTATGGACTCCAACTATTGGTGTATTGGTGCTCGGAGTCATCAGTGCATCTGGTTCGA 1018
Query 995 TGCCGATGAAGTCCCGAGATGGTCGAGGAACGACCGATGCTTATTGTGTGGCGAAATATG 1054
| |||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||
Sbjct 1019 TTCCGATGAAGTCCCGAGATGGTCGAGGCACCACCGATGCATATTGCGTGGCGAAATATG 1078
Query 1055 GGCAGAAATGGCTAGGCCGGACTGAGCCGCCTCTAGGAAGAGATGTAGTTGAGTATATGC 1114
|||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1079 GGCAAAAATGGCTAGGTCGGAGTGAGCCGCCTCTAGGAAGAGATGTAATTGAGTATATGC 1138
Query 1115 TCGATTTTGGATCTAACATTTGGAGTTTACGAAGAGGAAGAGCGAATTTCGAACGAATTG 1174
||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||
Sbjct 1139 TCGATTTCGGATCTAACATTTGGTGTTTACGAAGAGGCAGAGCTCATTTCGAAAGAATTG 1198
Query 1175 TGACTTTCTTCACCATGTTTATTGATTCTTGGATTTGGTTTGATTCGGTATGCAAATGGA 1234
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGAGTTTCTTCACAACGTTTATTGATTCTTGGATTTGGTTTGATTCGGTATGCAAATGGA 1258
Query 1235 AGAGTCCGCTGTCTAAAGCAGATTCGGCTTTACCCGATGAGCTAGACGAGGAATTTGATG 1294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 AGAGTCCGCTATCTAAAGCAGATTCGGCTTTACCCGATGAGCTAGACGAGGAATTCGATG 1318
Query 1295 GGTTTCCGAGTGCGAA-ATCTCCGGATTTGGTGAAGAAAAGTTGCTTGTGGAGTAATCTT 1353
||||||| || || || |||| |||||||||| | ||| ||| |||||||||||||||||
Sbjct 1319 GGTTTCCAAGCGC-AAGATCTGCGGATTTGGTTAGGAACAGTGGCTTGTGGAGTAATCTT 1377
Query 1354 CTTAGTCTCCATGAAACTGCTGATGACTTTGCTTGCGTTCTACGTCATGAGACATCCTAG 1413
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1378 CTTAGTCTCCATGAAACTGCTAATGACTTTGCTTGCGTTCTACGTCATGAGACACCCTAG 1437
> AT4G20080.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) plant phosphoribosyltransferase family protein |
chr4:10865295-10867619 FORWARD LENGTH=2325
Length=2325
Score = 126 bits (68), Expect = 5e-28
Identities = 127/155 (82%), Gaps = 6/155 (4%)
Strand=Plus/Plus
Query 1090 GGAAGAGATGTAGTTGAGTATATGCTCGATTTTGGATCTAACATTTGGAGTTTACGAAGA 1149
||||||||||| || ||||||||||||||| | ||||| |||||||||||| ||||||||
Sbjct 1639 GGAAGAGATGTTGTAGAGTATATGCTCGATGTGGGATCAAACATTTGGAGTCTACGAAGA 1698
Query 1150 GGAAGAGCGAATTTCGAACGAATTGTGAC-TTTCTTCACCATGTTT--ATTGATTCTTGG 1206
|||||||||||||||||||| |||| | ||| ||| ||| | || ||| |||||
Sbjct 1699 GGAAGAGCGAATTTCGAACGTCTTGTCTCGTTT-TTCG--ATGGCTGGATCGATGCTTGG 1755
Query 1207 ATTTGGTTTGATTCGGTATGCAAATGGAAGAGTCC 1241
| ||||||||| | | ||||||||||| |||||
Sbjct 1756 AAATGGTTTGATGAGATTTGCAAATGGAAAAGTCC 1790
Score = 71.3 bits (38), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 1340 TGTGGAGTAATCTT-CTTAGTCTCCATGAAACTGCTGATGAC-TTTGCTTGCGTTCTACG 1397
|||||||| || || || ||||||||||| | ||| | || ||| |||||||||||||
Sbjct 2173 TGTGGAGTGAT-TTGTTTCGTCTCCATGAAGTTACTGCTCACATTT-CTTGCGTTCTACG 2230
Query 1398 TCATGAGACATCCTAG 1413
||||||||||||||||
Sbjct 2231 TCATGAGACATCCTAG 2246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5