BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494508 Length=2042 Score E Sequences producing significant alignments: (Bits) Value AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H | chr5:... 3107 0.0 > AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H | chr5:18047784-18051878 REVERSE LENGTH=2237 Length=2237 Score = 3107 bits (1682), Expect = 0.0 Identities = 1930/2050 (94%), Gaps = 16/2050 (1%) Strand=Plus/Plus Query 1 AGAAATGCCGGTAGCGAGAGCGG-AGACATCGGATGCTAGGGTTATCGCTCATGTCGATA 59 ||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||| | Sbjct 96 AGAAATGCCGGTAGCGAGACCGGAAG-CATCGGATGCTAGAGTTATCGCTCATGTCGACA 154 Query 60 TGGATTGCTTCTACGTTCAAGTGGAGCAAAGGAAGCAACCGGAGTTGCGAGGACTTCCTA 119 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 155 TGGATTGCTTCTACGTTCAAGTGGAGCAGAGGAAGCAACCGGAGTTGCGAGGACTGCCTA 214 Query 120 CTGCTGTTGTACAGTACAATGAATGGCAAGGTGGTGGTTTGATTGCTGTTAGCTACGAAG 179 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 215 GTGCAGTTGTACAGTACAATGAATGGCAAGGTGGTGGTTTGATTGCTGTTAGTTACGAAG 274 Query 180 CACGTAAATGTGGCGTAAAGCGGTCGATGAGAGGTGATGAGGCTAAAGCTGCTTGTCCTC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 275 CACGTAAATGTGGCGTAAAGCGGTCGATGAGAGGTGATGAGGCTAAAGCTGCTTGTCCTC 334 Query 240 AGATTCAATTGGTTCAAGTTCCTGTGGCTCGTGGTAAAGCTGACCTTAATTTATATCGTG 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 AGATTCAATTGGTTCAAGTTCCTGTGGCTCGTGGTAAAGCTGACCTTAATTTATATCGCA 394 Query 300 GTGCCGGTTCTGAGGTGGTTTCGATTCTAGCAAAAAGTGGAAAATGTGAGAGGGCTTCGA 359 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 395 GTGCCGGTTCTGAGGTGGTTTCGATTCTAGCAAAAAGCGGAAAATGTGAGAGGGCTTCGA 454 Query 360 TTGATGAAGTGTATCTTGACCTCACTGATGCAGCAGAAAGCATGCTTGCTGATGCACCTC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 455 TTGATGAAGTGTATCTTGACCTCACTGATGCAGCAGAAAGCATGCTTGCTGATGCACCTC 514 Query 420 CAGAGAGTTTGGAATTGATAGATGAAGAAGTTCTTAAATCACATATTCTTGGAATGAGCA 479 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || Sbjct 515 CAGAGAGTTTGGAATTGATAGATGAGGAAGTTCTTAAATCCCATATTCTTGGAATGAACA 574 Query 480 GAGAGGATGGAGATGATTTCAAGGAGAATGTCCGCGATTGGATATGTCGA-AAGGATGCT 538 ||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||| ||||| Sbjct 575 GAGAGGATGGAGATGATTTCAAGGAGAGTGTCCGCAATTGGATTTGTCGAGAAG-ATGCT 633 Query 539 GATCGCCGTGAAAAGTTACTAAGTTGTGGAATTATTATTGTTGCAGAACTCCGGAAACAG 598 ||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 634 GATCGACGTGATAAGTTATTAAGTTGTGGAATTATCATTGTTGCAGAACTCCGGAAACAG 693 Query 599 GTGCTTAAGGAGACTGAATTTACTTGTTCTGCTGGCATAGCCCATAACAAGATGCTAGCT 658 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 694 GTGCTTAAGGAGACTGAGTTTACTTGTTCTGCTGGCATAGCCCATAACAAGATGCTAGCC 753 Query 659 AAACTTGCTAGTGGGATGAATAAACCTGCCCAACAAACCGTTGTACCATATTCAGCTGTG 718 |||||||||||||| ||||| |||||||| || || || |||||||||||| ||||||| Sbjct 754 AAACTTGCTAGTGGAATGAACAAACCTGCGCAGCAGACAGTTGTACCATATGCAGCTGTA 813 Query 719 CAGGAATTACTCAGTTCCTTGCCAATAAAGAAAATGAAACAGCTGGGAGGAAAGCTGGGC 778 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 814 CAGGAATTACTAAGTTCCTTGCCAATAAAGAAAATGAAACAACTGGGAGGAAAGCTGGGC 873 Query 779 ACTAGCTTGCAAACTGATCT-GGGAGTTGACTCTGTTGGGGACTTGTTGCAATATTCTGA 837 ||||||||||||||||| || |||||||||| | || ||||||||| |||||| |||||| Sbjct 874 ACTAGCTTGCAAACTGA-CTTGGGAGTTGACACAGTAGGGGACTTGCTGCAATTTTCTGA 932 Query 838 AACAAAGCTGCAAGAACATTATGGAATAAATACTGGTACGTGGTTATGGAATATCGCAAG 897 ||| ||||| ||||||||||| ||| ||||||||||||| |||||||||||||| ||||| Sbjct 933 AACGAAGCTACAAGAACATTACGGAGTAAATACTGGTACTTGGTTATGGAATATAGCAAG 992 Query 898 AGGGATCAGTGGAGAAGAAGTGCAAGGTCGCCTTCTCCCCAAAAGTCATGGTTCTGGGAA 957 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 993 AGGGATCAGTGGAGAAGAAGTGCAAGGTCGCCTTCTCCCCAAAAGTCATGGTTCTGGAAA 1052 Query 958 GACATTTCCCGGACCTCGTGCTTTGAAGTCACTCTCAACTGTTCAGCATTGGCTGAATCA 1017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 GACATTTCCCGGACCTCGTGCTTTGAAGTCACTCTCAACTGTTCAGCATTGGCTGAATCA 1112 Query 1018 GCTTTCTGAAGAACTAAGCGAGCGCCTCAGTTCTGACTTGGAGCAGAATAAGCGGATTGC 1077 |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1113 GCTTTCCGAGGAACTAAGCGAGCGCCTCGGTTCTGACTTGGAGCAGAATAAGCGGATTGC 1172 Query 1078 TAGTACCCTTACCCTTCATGCTAGTGCTTTCAAATCAAGGGATTCAAATTCTCATAAGAA 1137 || |||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||| Sbjct 1173 AAGCACCCTTACCCTTCATGCTAGCGCTTTCAGATCAAAGGATTCAGATTCTCATAAGAA 1232 Query 1138 ATTTCCTTCAAAATCATGTCCTCTGAGATATGGAGTAACCAAGATTCAAGAAGATGCCTT 1197 |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 1233 ATTTCCTTCAAAATCATGTCCTATGAGATATGGAGTAACCAAGATCCAAGAAGATGCCTT 1292 Query 1198 TAATCT-GTTCCAAGCTGCCTTTCGTGAGTACATGGGA-CCTTTCGGGAGCAAACCTCGA 1255 ||| || ||||||||||||||| ||||||||||||||| |||| ||||| |||||||| | Sbjct 1293 TAA-CTTGTTCCAAGCTGCCTTACGTGAGTACATGGGATCCTT-CGGGATCAAACCTCAA 1350 Query 1256 GGAAATAAGCAAGAGACATGGAGGATAACAGGCCTTTCTATTTCCGCAAGTAAAATTGTT 1315 |||||||||| ||||||||||||||||||||| |||||| |||| || |||||||||||| Sbjct 1351 GGAAATAAGCTAGAGACATGGAGGATAACAGGTCTTTCTGTTTCAGCGAGTAAAATTGTT 1410 Query 1316 GATATTCCATCTGGAACAAGCTCGATAATGAGATATTTCCAGAGTGAATCTACTGTTCCT 1375 ||||| |||||||||||||||||||| ||||||||||| || ||| || ||||||||||| Sbjct 1411 GATATACCATCTGGAACAAGCTCGATCATGAGATATTTTCAAAGTCAACCTACTGTTCCT 1470 Query 1376 TCTCGTTCAGCAGATGGTTGTGTTCAAG-ATCATGTAACGATAACTCCTTCAGCTAGTGA 1434 |||||||||||||||||||||||||||| | ||||| |||| ||| |||||||||| || Sbjct 1471 TCTCGTTCAGCAGATGGTTGTGTTCAAGGAA-ATGTAGCGATGACTGCTTCAGCTAGCGA 1529 Query 1435 AGGTTGTTCAGAACAGAGGTCAACAGAAACCCAAGCAGCAATGCCTGAAGAAGAAACTGG 1494 ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| || || Sbjct 1530 AGGATGTTCAGAACAGAGGTCAACAGAAACTCAAGCAGCAATGCCTGAAGTAGACACCGG 1589 Query 1495 TGTAACTTATACTTTGCATAATTTTGAAAACCCAGATAAAGGCATTGATCCAGTCTCCGA 1554 ||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||| Sbjct 1590 TGTAACTTATACTTTGCCTAATTTTGAAAACCAAGATAAAGACATTGATCTAGTCTCCGA 1649 Query 1555 AAAGGATATTGTCTCTTGTCCATCAAACGAAGCAACGGATGTTTCTACCCAATCAGAATT 1614 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1650 AAAGGATGTTGTCTCTTGTCCATCAAACGAAGCAACGGATGTTTCTACCCAATCAGAATC 1709 Query 1615 AAACAAAGGCACACAGACAAAGAGAATTGGGCGGAAGATGAACAACTCGAAAGAAAAGAA 1674 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1710 AAACAAAGGCACACAGACAAAGAAAATTGGGCGGAAGATGAACAACTCGAAAGAAAAGAA 1769 Query 1675 TCGGGGAATGCCTTCAATTGTCGATATCTTTAAGAATTACAATGCAACTCCTCCATCAAA 1734 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1770 TCGGGGAATGCCTTCAATTGTCGATATCTTTAAGAATTACAATGCAACACCTCCATCAAA 1829 Query 1735 GCAAGAGACTCAAGAAGATTCCACAGTGTCATCAACTAGTAAAAAAGCCAAATTTA-GTA 1793 ||||||||||||||||||||||||||||||||| | ||||||| ||| ||| ||| ||| Sbjct 1830 ACAAGAGACTCAAGAAGATTCCACAGTGTCATCAGCCAGTAAAAGAGC-AAAGTTAAGTA 1888 Query 1794 GCAGCAGCCATAATAGTCAAGTGAATCAAGAGGTAGAAGAGAGAAGAGAAACAGACTGGG 1853 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1889 GCAGCAGCCATAATAGTCAAGTGAATCAAGAGGTAGAAGAGAGTAGAGAAACAGATTGGG 1948 Query 1854 GCTATAAGACTGATGAAATTGACCAGTCGGTTTTTGATGAATTACCGGTTGAGATTCAAC 1913 | ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||| Sbjct 1949 GATATAAGACTGATGAAATCGATCAGTCAGTTTTCGATGAATTACCGGTTGAGATTCAAC 2008 Query 1914 GAGAACTCAGGAGTTTCCTACGC-CCTAATAAGCAGTTTAATGCCGGTAAAAGCAAAGGT 1972 ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 2009 GAGAACTCAGGAGTTTCCTACGCACC-AATAAGCAGTTTAACACCGGTAAAAGCAAAGGT 2067 Query 1973 GATGGTTCTACTTCAAGCATTGCTCATTATTTTCCACCATTGAATAGATAGACCCAAGCT 2032 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 2068 GATGGTTCTACTTCAAGCATTGCTCATTATTTTCCACCATTGAATAGATAGATCTAAGCT 2127 Query 2033 CCTTTGTCTC 2042 |||||||||| Sbjct 2128 CCTTTGTCTC 2137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101204298720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5