BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494508
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H | chr5:... 3107 0.0
> AT5G44740.2 | Symbols: POLH | Y-family DNA polymerase H | chr5:18047784-18051878
REVERSE LENGTH=2237
Length=2237
Score = 3107 bits (1682), Expect = 0.0
Identities = 1930/2050 (94%), Gaps = 16/2050 (1%)
Strand=Plus/Plus
Query 1 AGAAATGCCGGTAGCGAGAGCGG-AGACATCGGATGCTAGGGTTATCGCTCATGTCGATA 59
||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||| |
Sbjct 96 AGAAATGCCGGTAGCGAGACCGGAAG-CATCGGATGCTAGAGTTATCGCTCATGTCGACA 154
Query 60 TGGATTGCTTCTACGTTCAAGTGGAGCAAAGGAAGCAACCGGAGTTGCGAGGACTTCCTA 119
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 155 TGGATTGCTTCTACGTTCAAGTGGAGCAGAGGAAGCAACCGGAGTTGCGAGGACTGCCTA 214
Query 120 CTGCTGTTGTACAGTACAATGAATGGCAAGGTGGTGGTTTGATTGCTGTTAGCTACGAAG 179
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 215 GTGCAGTTGTACAGTACAATGAATGGCAAGGTGGTGGTTTGATTGCTGTTAGTTACGAAG 274
Query 180 CACGTAAATGTGGCGTAAAGCGGTCGATGAGAGGTGATGAGGCTAAAGCTGCTTGTCCTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CACGTAAATGTGGCGTAAAGCGGTCGATGAGAGGTGATGAGGCTAAAGCTGCTTGTCCTC 334
Query 240 AGATTCAATTGGTTCAAGTTCCTGTGGCTCGTGGTAAAGCTGACCTTAATTTATATCGTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 AGATTCAATTGGTTCAAGTTCCTGTGGCTCGTGGTAAAGCTGACCTTAATTTATATCGCA 394
Query 300 GTGCCGGTTCTGAGGTGGTTTCGATTCTAGCAAAAAGTGGAAAATGTGAGAGGGCTTCGA 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 395 GTGCCGGTTCTGAGGTGGTTTCGATTCTAGCAAAAAGCGGAAAATGTGAGAGGGCTTCGA 454
Query 360 TTGATGAAGTGTATCTTGACCTCACTGATGCAGCAGAAAGCATGCTTGCTGATGCACCTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TTGATGAAGTGTATCTTGACCTCACTGATGCAGCAGAAAGCATGCTTGCTGATGCACCTC 514
Query 420 CAGAGAGTTTGGAATTGATAGATGAAGAAGTTCTTAAATCACATATTCTTGGAATGAGCA 479
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 515 CAGAGAGTTTGGAATTGATAGATGAGGAAGTTCTTAAATCCCATATTCTTGGAATGAACA 574
Query 480 GAGAGGATGGAGATGATTTCAAGGAGAATGTCCGCGATTGGATATGTCGA-AAGGATGCT 538
||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||| |||||
Sbjct 575 GAGAGGATGGAGATGATTTCAAGGAGAGTGTCCGCAATTGGATTTGTCGAGAAG-ATGCT 633
Query 539 GATCGCCGTGAAAAGTTACTAAGTTGTGGAATTATTATTGTTGCAGAACTCCGGAAACAG 598
||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 634 GATCGACGTGATAAGTTATTAAGTTGTGGAATTATCATTGTTGCAGAACTCCGGAAACAG 693
Query 599 GTGCTTAAGGAGACTGAATTTACTTGTTCTGCTGGCATAGCCCATAACAAGATGCTAGCT 658
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GTGCTTAAGGAGACTGAGTTTACTTGTTCTGCTGGCATAGCCCATAACAAGATGCTAGCC 753
Query 659 AAACTTGCTAGTGGGATGAATAAACCTGCCCAACAAACCGTTGTACCATATTCAGCTGTG 718
|||||||||||||| ||||| |||||||| || || || |||||||||||| |||||||
Sbjct 754 AAACTTGCTAGTGGAATGAACAAACCTGCGCAGCAGACAGTTGTACCATATGCAGCTGTA 813
Query 719 CAGGAATTACTCAGTTCCTTGCCAATAAAGAAAATGAAACAGCTGGGAGGAAAGCTGGGC 778
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 814 CAGGAATTACTAAGTTCCTTGCCAATAAAGAAAATGAAACAACTGGGAGGAAAGCTGGGC 873
Query 779 ACTAGCTTGCAAACTGATCT-GGGAGTTGACTCTGTTGGGGACTTGTTGCAATATTCTGA 837
||||||||||||||||| || |||||||||| | || ||||||||| |||||| ||||||
Sbjct 874 ACTAGCTTGCAAACTGA-CTTGGGAGTTGACACAGTAGGGGACTTGCTGCAATTTTCTGA 932
Query 838 AACAAAGCTGCAAGAACATTATGGAATAAATACTGGTACGTGGTTATGGAATATCGCAAG 897
||| ||||| ||||||||||| ||| ||||||||||||| |||||||||||||| |||||
Sbjct 933 AACGAAGCTACAAGAACATTACGGAGTAAATACTGGTACTTGGTTATGGAATATAGCAAG 992
Query 898 AGGGATCAGTGGAGAAGAAGTGCAAGGTCGCCTTCTCCCCAAAAGTCATGGTTCTGGGAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 993 AGGGATCAGTGGAGAAGAAGTGCAAGGTCGCCTTCTCCCCAAAAGTCATGGTTCTGGAAA 1052
Query 958 GACATTTCCCGGACCTCGTGCTTTGAAGTCACTCTCAACTGTTCAGCATTGGCTGAATCA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GACATTTCCCGGACCTCGTGCTTTGAAGTCACTCTCAACTGTTCAGCATTGGCTGAATCA 1112
Query 1018 GCTTTCTGAAGAACTAAGCGAGCGCCTCAGTTCTGACTTGGAGCAGAATAAGCGGATTGC 1077
|||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1113 GCTTTCCGAGGAACTAAGCGAGCGCCTCGGTTCTGACTTGGAGCAGAATAAGCGGATTGC 1172
Query 1078 TAGTACCCTTACCCTTCATGCTAGTGCTTTCAAATCAAGGGATTCAAATTCTCATAAGAA 1137
|| |||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||
Sbjct 1173 AAGCACCCTTACCCTTCATGCTAGCGCTTTCAGATCAAAGGATTCAGATTCTCATAAGAA 1232
Query 1138 ATTTCCTTCAAAATCATGTCCTCTGAGATATGGAGTAACCAAGATTCAAGAAGATGCCTT 1197
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1233 ATTTCCTTCAAAATCATGTCCTATGAGATATGGAGTAACCAAGATCCAAGAAGATGCCTT 1292
Query 1198 TAATCT-GTTCCAAGCTGCCTTTCGTGAGTACATGGGA-CCTTTCGGGAGCAAACCTCGA 1255
||| || ||||||||||||||| ||||||||||||||| |||| ||||| |||||||| |
Sbjct 1293 TAA-CTTGTTCCAAGCTGCCTTACGTGAGTACATGGGATCCTT-CGGGATCAAACCTCAA 1350
Query 1256 GGAAATAAGCAAGAGACATGGAGGATAACAGGCCTTTCTATTTCCGCAAGTAAAATTGTT 1315
|||||||||| ||||||||||||||||||||| |||||| |||| || ||||||||||||
Sbjct 1351 GGAAATAAGCTAGAGACATGGAGGATAACAGGTCTTTCTGTTTCAGCGAGTAAAATTGTT 1410
Query 1316 GATATTCCATCTGGAACAAGCTCGATAATGAGATATTTCCAGAGTGAATCTACTGTTCCT 1375
||||| |||||||||||||||||||| ||||||||||| || ||| || |||||||||||
Sbjct 1411 GATATACCATCTGGAACAAGCTCGATCATGAGATATTTTCAAAGTCAACCTACTGTTCCT 1470
Query 1376 TCTCGTTCAGCAGATGGTTGTGTTCAAG-ATCATGTAACGATAACTCCTTCAGCTAGTGA 1434
|||||||||||||||||||||||||||| | ||||| |||| ||| |||||||||| ||
Sbjct 1471 TCTCGTTCAGCAGATGGTTGTGTTCAAGGAA-ATGTAGCGATGACTGCTTCAGCTAGCGA 1529
Query 1435 AGGTTGTTCAGAACAGAGGTCAACAGAAACCCAAGCAGCAATGCCTGAAGAAGAAACTGG 1494
||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||
Sbjct 1530 AGGATGTTCAGAACAGAGGTCAACAGAAACTCAAGCAGCAATGCCTGAAGTAGACACCGG 1589
Query 1495 TGTAACTTATACTTTGCATAATTTTGAAAACCCAGATAAAGGCATTGATCCAGTCTCCGA 1554
||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1590 TGTAACTTATACTTTGCCTAATTTTGAAAACCAAGATAAAGACATTGATCTAGTCTCCGA 1649
Query 1555 AAAGGATATTGTCTCTTGTCCATCAAACGAAGCAACGGATGTTTCTACCCAATCAGAATT 1614
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 AAAGGATGTTGTCTCTTGTCCATCAAACGAAGCAACGGATGTTTCTACCCAATCAGAATC 1709
Query 1615 AAACAAAGGCACACAGACAAAGAGAATTGGGCGGAAGATGAACAACTCGAAAGAAAAGAA 1674
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1710 AAACAAAGGCACACAGACAAAGAAAATTGGGCGGAAGATGAACAACTCGAAAGAAAAGAA 1769
Query 1675 TCGGGGAATGCCTTCAATTGTCGATATCTTTAAGAATTACAATGCAACTCCTCCATCAAA 1734
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1770 TCGGGGAATGCCTTCAATTGTCGATATCTTTAAGAATTACAATGCAACACCTCCATCAAA 1829
Query 1735 GCAAGAGACTCAAGAAGATTCCACAGTGTCATCAACTAGTAAAAAAGCCAAATTTA-GTA 1793
||||||||||||||||||||||||||||||||| | ||||||| ||| ||| ||| |||
Sbjct 1830 ACAAGAGACTCAAGAAGATTCCACAGTGTCATCAGCCAGTAAAAGAGC-AAAGTTAAGTA 1888
Query 1794 GCAGCAGCCATAATAGTCAAGTGAATCAAGAGGTAGAAGAGAGAAGAGAAACAGACTGGG 1853
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1889 GCAGCAGCCATAATAGTCAAGTGAATCAAGAGGTAGAAGAGAGTAGAGAAACAGATTGGG 1948
Query 1854 GCTATAAGACTGATGAAATTGACCAGTCGGTTTTTGATGAATTACCGGTTGAGATTCAAC 1913
| ||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1949 GATATAAGACTGATGAAATCGATCAGTCAGTTTTCGATGAATTACCGGTTGAGATTCAAC 2008
Query 1914 GAGAACTCAGGAGTTTCCTACGC-CCTAATAAGCAGTTTAATGCCGGTAAAAGCAAAGGT 1972
||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 2009 GAGAACTCAGGAGTTTCCTACGCACC-AATAAGCAGTTTAACACCGGTAAAAGCAAAGGT 2067
Query 1973 GATGGTTCTACTTCAAGCATTGCTCATTATTTTCCACCATTGAATAGATAGACCCAAGCT 2032
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2068 GATGGTTCTACTTCAAGCATTGCTCATTATTTTCCACCATTGAATAGATAGATCTAAGCT 2127
Query 2033 CCTTTGTCTC 2042
||||||||||
Sbjct 2128 CCTTTGTCTC 2137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101204298720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5