BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494510
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44730.2 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1419 0.0
> AT5G44730.2 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:18045496-18046931 REVERSE
LENGTH=979
Length=979
Score = 1419 bits (768), Expect = 0.0
Identities = 874/924 (95%), Gaps = 12/924 (1%)
Strand=Plus/Plus
Query 1 AAGCAAACCCAAGATAAGCCGAAACAAACAATGGCGATTTCTTTCATGTAGAGATATTTT 60
|||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 21 AAGCAAACACAAGATAAGAAGAAACAAACAATGGCGATTTCTTTCAT-T-TAGATATTTT 78
Query 61 CTCTCGATTCTCAGCTTCTGGATTTTGTTGAAAGAATCTGAAATGGCCGTGTCGCTTTTA 120
| ||||||||| ||||||||||||||| |||||| || ||||||||| ||||||||||||
Sbjct 79 C-CTCGATTCTTAGCTTCTGGATTTTGGTGAAAGGATTTGAAATGGCGGTGTCGCTTTTA 137
Query 121 TCGAAATTACGGTGTATAACAGTAGATGTTACTGGTACACTTATAGCTTACAAAGGAGAG 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 TCGAAACTACGGTGTATAACAGTAGATGTTACTGGTACACTTATAGCTTACAAAGGAGAG 197
Query 181 CTTGGTGATTACTATTGTATGGCTGCTAAAGCCATTGGTTTGCCTTGTCCTGATTATAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTTGGTGATTACTATTGTATGGCTGCTAAAGCCATTGGTTTGCCTTGTCCTGATTATAAA 257
Query 241 CGAGTTCATGAAGGTTTTAAACTAGCTTATACAGATATGGCACAAAAGTATCCTTGTTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CGAGTTCATGAAGGTTTTAAACTAGCTTATACAGATATGGCACAAAAGTATCCTTGTTTC 317
Query 301 GGTTTTCATGCGAAAATGCCGAATATTGTTTGGTGGAAAACTTGTGTGAGAGATTCATTT 360
||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 318 GGTTTCCATGCCAAAATGCCAAACATTGTTTGGTGGAAAACTTGTGTGAGAGATTCATTT 377
Query 361 GTCAAGGTAGGATATGAGTATGATGAGGAGACGTTTGAGAAGATATTTAGGCGAATCTAT 420
||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 378 GTCAAGGCAGGATATGAGTATGATGAGGAGACATTTGAGAAGATATTTAGGAGAATCTAT 437
Query 421 TCGACGTTTGGTTCTGCTGCACCTTACTCTGTGTTTGAAGATTCTCGACCGTTTTTAAGA 480
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 438 TCGACGTTTGGTTCTGCTGCACCTTACTCTGTGTTTCAAGATTCTCAACCGTTTTTAAGA 497
Query 481 TGGGCACGCAAGAAAGGTCTTATAGTCGGACTTGTTAGCAATGCAGAATACCGATATCGA 540
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 498 TGGGCACGCAGGAAAGGTCTTATAGTCGGACTTGTTAGCAATGCGGAATACCGATATCAA 557
Query 541 GAAGTTATTTTACCTGCCTTAGGTTTGAACAAGGCAGAGTGGGATTTTGGTGTATTCTCT 600
||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 558 GAAGTTATTTTACCTTCCTTCGGTTTGAGCAAGGCAGAGTGGGATTTTGGTGTATTCTCT 617
Query 601 GGAATTGAAGGGATAGAGAAACCAGATCCGAGGATTTACAAGCTCGC-CTTAGAGAGAGC 659
||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||
Sbjct 618 GGAATTGAAGGGATAGAGAAACCAGATCCGAGGATTTTTACGCTCGCGCT-AGAGAGAGC 676
Query 660 GGGGAATA-T-T-GCGCCTGAAGAGGTTTTGCATATTGGAGACAGTATGCGTAAAGATTA 716
||||||| | | |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 677 CGGGAATAATATTGCGCCTGAAGAGGTTTTGCATATTGGAGACAGCATGCGCAAAGATTA 736
Query 717 TGCTCCGGCAAAGAGTATTGGGATGCATGCTTTGTTGGTTGATAGGTTTAAGACAGAAGC 776
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 737 TGTTCCAGCAAAGAGTATTGGGATGCATGCTTTGTTGGTTGATAGGTTTAAGACGGAAGC 796
Query 777 TGCTAAAGACTGGACAGAAGCTGGAGCTATTGTGCTTCCAGATTTGGTTGCTGTTCAACA 836
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 797 TGCTAAAGACTGGATAGAAGCTGGAGCCATTGTGCTTCCAGATTTGGTTGCTGTTCAACA 856
Query 837 ACTTTTGGAGTCTGACAAGTTGAAATGTTGAAAATG-AGACCTCTCT--AAGTATCAAAT 893
||||||||||||||| ||||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 857 ACTTTTGGAGTCTGATAAGTTGAAATGTT-AAAATGCAGACCTCTCTTTAAGTATGAAAT 915
Query 894 CTAATGTATTGTAGTATTGCACAT 917
||||||||||||||||||||||||
Sbjct 916 CTAATGTATTGTAGTATTGCACAT 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5