BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494514
Length=494
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44710.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal... 673 0.0
> AT5G44710.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal
protein S27/S33, mitochondrial (InterPro:IPR013219); Has
101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria
- 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses -
0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18040910-18042560
FORWARD LENGTH=674
Length=674
Score = 673 bits (364), Expect = 0.0
Identities = 476/523 (91%), Gaps = 35/523 (7%)
Strand=Plus/Plus
Query 7 TTTCAAGGAAGATGGCTAGTGGTAGCCTGAAAAGCCTTATATCTTCAGCAGTGGGTCGAG 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 117 TTTCAAGGAAGATGGCTAGTGGTAGCCTGAAGAGCCTTATATCTTCAGCAGTGGGTCGAG 176
Query 67 GTGTGACCGAAGCAAGAGCCAGGATTTTCGGACATATGCTTAACCCAACGGGACAGAGAT 126
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GTGTGACCGAAGCAAGAGCAAGGATTTTCGGACATATGCTTAACCCAACGGGACAGAGAT 236
Query 127 CTCCTCATAAGATATTAAGGAAGAAGCTTATTGGTGATAAGGTTGCAGAATGGTATCCAT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCCTCATAAGATATTAAGGAAGAAGCTTATTGGTGATAAGGTTGCAGAATGGTATCCAT 296
Query 187 ACGACATCAAGAATGAGGATCCTAATGTCTTGGCTAGAGAGGAACAAGAGCGGATATCGA 246
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 297 ACGACATCAAGAATGAGGATCCCAATGTCTTGGCTAGAGAAGAAAAAGAGCGGATATCGA 356
Query 247 AGCTTGAGATGTTGAAGCGTCGTAACAAAGGACCACCAAAGAAGGGTCATGGAAAACGTG 306
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 AGCTTGAGATGTTGAAACGTCGTGACAAAGGACCACCAAAGAAGGGTCATGGAAAACGTG 416
Query 307 CTGCGAAGCGTAACAAGTAGAAGTAATAACCATAGCTACAAAAAACTCT-TG---T---- 358
||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 417 CTGCGAAGCGTAACAAGTAGAAGTAATAACCATAGCTACAAAAAATTCTCTGCACTCTTA 476
Query 359 G-GT-----T-----GG---A-TCAGATAGAAC--A-A-GTAAAAATTTCTCCTACTTAA 399
| || | || | ||||||||||| | | || ||||||||||||||||||
Sbjct 477 GAGTCAAACTCTTCTGGTTGAATCAGATAGAACTTATAAGTGAAAATTTCTCCTACTTAA 536
Query 400 AACTGCATTGGTTTCTAGTGATGTTACTATGTTGAGACATAGTTGAAA--T-T--GCTTC 454
||||| ||||||||| | |||||||||||||||||||||||||||||| | | |||||
Sbjct 537 AACTGAATTGGTTTCCAATGATGTTACTATGTTGAGACATAGTTGAAAGCTATTTGCTTC 596
Query 455 CCTTTTGACTAAA--TGTCAATGGCTTT-GTTTCTCTTCTCTT 494
||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 597 CCTTTTGACTAAAAATGTCAATGGCTTTTGTTTCTCTTCTCTT 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559814943
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5