BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494518 Length=1356 Score E Sequences producing significant alignments: (Bits) Value AT5G44660.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2019 0.0 > AT5G44660.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits to 462 proteins in 141 species: Archae - 2; Bacteria - 370; Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other Eukaryotes - 239 (source: NCBI BLink). | chr5:18015771-18017177 FORWARD LENGTH=1407 Length=1407 Score = 2019 bits (1093), Expect = 0.0 Identities = 1274/1361 (94%), Gaps = 13/1361 (1%) Strand=Plus/Plus Query 1 ATGGTGGCTGCAGTTCTTATGCCAA-TGGTCAGTTTCAGAGACGAAAGTTCTCGTGAAAA 59 |||||||||||||| |||||||||| | | |||||||||||||||||| |||| || | Sbjct 40 ATGGTGGCTGCAGTACTTATGCCAACT-ATTAGTTTCAGAGACGAAAGTGCTCGCGAGGA 98 Query 60 TTGGCAAGTTATAAGTAGAAATAATTCGAAGAAGAAGATTCTGGTCAAGCAAACGAGTAT 119 |||||||||| |||| ||||| |||| |||||||||||||| ||||||||||||||||| Sbjct 99 TTGGCAAGTTCTAAGCAGAAACGATTCAAAGAAGAAGATTCTAGTCAAGCAAACGAGTAT 158 Query 120 GTTGCAATCCGAAAGAGAGATATCGATGGATCCAAAATCAATCAGGTCGTTGTCTTTTTC 179 | |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | || Sbjct 159 GATGCAATCCGAGAGAGAGATATCGATGGATCCGAAATCAATCAGGTCGTTGTCTATGTC 218 Query 180 AGGTTCGTTGAGAAGGAATGATAGCTTCGATATGATTCGTTTACCGGCGATGTCACCTCC 239 ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| Sbjct 219 GGGTTCGTTGAGAAGGAACGATAGCTTCGATATGGTTCGTTTACCGGCAATGTCACCTCC 278 Query 240 TAGAGACTTAGATGCGCCTATGGCTATTCCTTTGCAGCCAGTGCAGACCT-CTGCTTCTC 298 ||||||||||||| |||||||| || ||||||||||||||||||||| || ||| ||||| Sbjct 279 TAGAGACTTAGATTCGCCTATGCCTCTTCCTTTGCAGCCAGTGCAGA-CTACTGGTTCTC 337 Query 299 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTCTCAA 358 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 338 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAGCCTCCCAA 397 Query 359 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC 418 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 398 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCC 457 Query 419 -TCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGA 477 || ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 458 TTC-CAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGA 516 Query 478 AACAAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGT 537 ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| Sbjct 517 AACAAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGT 576 Query 538 CTCATGCGGGCGCTCAGAAACAAGGAACAAGACTCGTCTGCGGCGTCATACAAGAGAAGC 597 ||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 577 CTCATGCGGGCCCTCAGAAACAAGGAACAAGACTCGTCTTCGGCGTCGTACAAGAGAAGC 636 Query 598 AAATCTTGTGGGTCTACTAGTAAGAGACTATCTCTTAAGAGCAGCGGAATCAGAAACTCT 657 |||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||||| Sbjct 637 AAATCTTGTGGGTCTACTAGCAAGACACTCTCTCATAAGAGCAGCGGAATCAGAAACTCT 696 Query 658 TTCTTCATTAAAACCGAATCTAACAAGAGCATCAGCAATAATAATACATTAGAAGACAGA 717 ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| Sbjct 697 TTCTTCATTAAAACCGATTCGAACAAGAGCATCAGCAATAATAGTACATTAGAAGACAGA 756 Query 718 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGAAAAACCGATCAGA 777 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 757 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGGAAAACCGATCAGA 816 Query 778 TCATCACGGAAAGATGATTCTTCCTCCTTCACCCGAACCACCACGATGACGAGATCATCA 837 ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 817 TCATCACAGAAAGACGATTCTTCTTCCTTCACCCGAACCACCACGATGACGAGATCATCA 876 Query 838 TCATCGACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 897 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 877 TCCTCTACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 936 Query 898 GTGATCTCAGCTCGGGCTTCAATGGAGAAATTCGATTGCGGCTCATACACTTCGGAAGCC 957 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| || Sbjct 937 GTGATCTCCGCTCGAGCTTCAATGGAGAAATTCGATTGCGGCTCATATACTTCGGAATCC 996 Query 958 -GTCGGAGAAGAAGGAGGAAATCACTTCTTTGACTTACCATCCGAGCTAATCAAAAGCGG 1016 | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 997 TG-CGGAGAGGAAGGAGGAAATCACTTCTTTGACTTACCGTCCGAGCTAATCAAAAGTGG 1055 Query 1017 TTCAGGTGATAACGACCATGATGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1076 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1056 TTCAGGTGATAACGACCATGACGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1115 Query 1077 TGTTGAGAAAGAGATCAAAGGGGTTTTAAAGGTTTCTGGTTCGAGAAACAGAAAATCGAT 1136 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | || Sbjct 1116 TGTTGAGAAAGAGATCAAAGGTGTTTTAAAGGTTTCTGGTTCGAAAAACAGAAAAGCAAT 1175 Query 1137 TGAGTCTTCTTCACTGCGTCAGGTTCGATTCTCCACGTCATCGCCGGTTTCATACCCAAC 1196 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1176 GGAGTCTCCTTCACTGCGTCAGGTTCGATTCTCCACATCATCGCCGGTTTCATACCCGAC 1235 Query 1197 GTCTCCGGCAATCTCTCCACGGTTGTTAGAAGCCACCAAGAATTTCAATGCTTTCTTGGA 1256 ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1236 GTCTCCGGCGATCTCTCCACGGTTATTAGAAGCCACCAAGAATTTTAATGCTTTCTTGGA 1295 Query 1257 AGCTCAAGCCGTTTAAATGATGATGGAGC-CTTAACTACAATATAAAATATAAGCTATAA 1315 |||||||||||||||||||||| | | | |||||||||||||||||||||||||| ||| Sbjct 1296 AGCTCAAGCCGTTTAAATGATG--G-A-CTCTTAACTACAATATAAAATATAAGCTGTAA 1351 Query 1316 TATCCCAAAGTCTTGTTAAATATTTTTCTTTGGGAAATTAA 1356 ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1352 TATACCAAAGTCTTGCTAAATATTTTTCTTTGGGAAATTAA 1392 Score = 267 bits (144), Expect = 3e-70 Identities = 190/210 (90%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 361 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTC 420 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | Sbjct 334 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAG-C-C 391 Query 421 TCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 480 || | ||| | ||||||||||||||||||||||||||||||||| |||||||| Sbjct 392 TC---C-CAA-----AC-TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAAC 441 Query 481 AAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 540 ||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| Sbjct 442 AAGGACCAAGACAGCCTTCCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTC 501 Query 541 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 570 |||||||| ||||||||||||||||||||| Sbjct 502 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 531 Score = 267 bits (144), Expect = 3e-70 Identities = 190/210 (90%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 295 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC-T 353 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | Sbjct 400 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCCTT 459 Query 354 -----CTCAA--AC----TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 402 ||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 460 CCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAAC 519 Query 403 AAGGAACAAGACAGCCTCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 462 |||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||| Sbjct 520 AAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTC 579 Query 463 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 492 |||||||| ||||||||||||||||||||| Sbjct 580 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 609 Score = 156 bits (84), Expect = 6e-37 Identities = 124/141 (88%), Gaps = 12/141 (9%) Strand=Plus/Plus Query 286 ACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAA 345 ||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 469 ACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAACAAGGAACAA 528 Query 346 GACAGCCTC------TCAA--ACT----CTCCTAAACAACGTTCAGGTCTCATGCGGGCG 393 ||||||||| |||| ||| |||| |||||||||||||||||||||||||| Sbjct 529 GACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTCATGCGGGCC 588 Query 394 CTCAGAAACAAGGAACAAGAC 414 ||||||||||||||||||||| Sbjct 589 CTCAGAAACAAGGAACAAGAC 609 Score = 154 bits (83), Expect = 2e-36 Identities = 121/137 (88%), Gaps = 12/137 (9%) Strand=Plus/Plus Query 434 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACA 493 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACA 388 Query 494 GCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCA 553 ||||||||||||| || || ||||||||||||||||||||||||||| ||| Sbjct 389 GCCTCCCAAACTC----TC--CT------AAACAACGTTCAGGTCTCATGCGGGCGTTCA 436 Query 554 GAAACAAGGAACAAGAC 570 |||||||||| |||||| Sbjct 437 GAAACAAGGACCAAGAC 453 Score = 99.0 bits (53), Expect = 1e-19 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 512 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGAC 570 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGAC 387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66766724850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5