BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494518
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44660.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2019 0.0
> AT5G44660.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G20190.1);
Has 944 Blast hits to 462 proteins in 141 species: Archae
- 2; Bacteria - 370; Metazoa - 161; Fungi - 102; Plants - 64;
Viruses - 6; Other Eukaryotes - 239 (source: NCBI BLink).
| chr5:18015771-18017177 FORWARD LENGTH=1407
Length=1407
Score = 2019 bits (1093), Expect = 0.0
Identities = 1274/1361 (94%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGCTGCAGTTCTTATGCCAA-TGGTCAGTTTCAGAGACGAAAGTTCTCGTGAAAA 59
|||||||||||||| |||||||||| | | |||||||||||||||||| |||| || |
Sbjct 40 ATGGTGGCTGCAGTACTTATGCCAACT-ATTAGTTTCAGAGACGAAAGTGCTCGCGAGGA 98
Query 60 TTGGCAAGTTATAAGTAGAAATAATTCGAAGAAGAAGATTCTGGTCAAGCAAACGAGTAT 119
|||||||||| |||| ||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 99 TTGGCAAGTTCTAAGCAGAAACGATTCAAAGAAGAAGATTCTAGTCAAGCAAACGAGTAT 158
Query 120 GTTGCAATCCGAAAGAGAGATATCGATGGATCCAAAATCAATCAGGTCGTTGTCTTTTTC 179
| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 159 GATGCAATCCGAGAGAGAGATATCGATGGATCCGAAATCAATCAGGTCGTTGTCTATGTC 218
Query 180 AGGTTCGTTGAGAAGGAATGATAGCTTCGATATGATTCGTTTACCGGCGATGTCACCTCC 239
||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 219 GGGTTCGTTGAGAAGGAACGATAGCTTCGATATGGTTCGTTTACCGGCAATGTCACCTCC 278
Query 240 TAGAGACTTAGATGCGCCTATGGCTATTCCTTTGCAGCCAGTGCAGACCT-CTGCTTCTC 298
||||||||||||| |||||||| || ||||||||||||||||||||| || ||| |||||
Sbjct 279 TAGAGACTTAGATTCGCCTATGCCTCTTCCTTTGCAGCCAGTGCAGA-CTACTGGTTCTC 337
Query 299 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTCTCAA 358
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 338 CTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAGCCTCCCAA 397
Query 359 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC 418
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 398 ACTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCC 457
Query 419 -TCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGA 477
|| ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 458 TTC-CAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGA 516
Query 478 AACAAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGT 537
||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 517 AACAAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGT 576
Query 538 CTCATGCGGGCGCTCAGAAACAAGGAACAAGACTCGTCTGCGGCGTCATACAAGAGAAGC 597
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 577 CTCATGCGGGCCCTCAGAAACAAGGAACAAGACTCGTCTTCGGCGTCGTACAAGAGAAGC 636
Query 598 AAATCTTGTGGGTCTACTAGTAAGAGACTATCTCTTAAGAGCAGCGGAATCAGAAACTCT 657
|||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||
Sbjct 637 AAATCTTGTGGGTCTACTAGCAAGACACTCTCTCATAAGAGCAGCGGAATCAGAAACTCT 696
Query 658 TTCTTCATTAAAACCGAATCTAACAAGAGCATCAGCAATAATAATACATTAGAAGACAGA 717
||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 697 TTCTTCATTAAAACCGATTCGAACAAGAGCATCAGCAATAATAGTACATTAGAAGACAGA 756
Query 718 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGAAAAACCGATCAGA 777
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 757 TTCAAATGCAACGCTCTGTGTTTATTCCTCCCCGGTTTCAGTAAAGGAAAACCGATCAGA 816
Query 778 TCATCACGGAAAGATGATTCTTCCTCCTTCACCCGAACCACCACGATGACGAGATCATCA 837
||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 817 TCATCACAGAAAGACGATTCTTCTTCCTTCACCCGAACCACCACGATGACGAGATCATCA 876
Query 838 TCATCGACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 897
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TCCTCTACCATTACCGTTTCAAGAACAGTCTCCGTCAGAGAATCCACCACCACTACCACA 936
Query 898 GTGATCTCAGCTCGGGCTTCAATGGAGAAATTCGATTGCGGCTCATACACTTCGGAAGCC 957
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 937 GTGATCTCCGCTCGAGCTTCAATGGAGAAATTCGATTGCGGCTCATATACTTCGGAATCC 996
Query 958 -GTCGGAGAAGAAGGAGGAAATCACTTCTTTGACTTACCATCCGAGCTAATCAAAAGCGG 1016
| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 997 TG-CGGAGAGGAAGGAGGAAATCACTTCTTTGACTTACCGTCCGAGCTAATCAAAAGTGG 1055
Query 1017 TTCAGGTGATAACGACCATGATGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1076
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TTCAGGTGATAACGACCATGACGAACCGGTTTCAGCGGCTTTCGTGTTCGACAAGGAACC 1115
Query 1077 TGTTGAGAAAGAGATCAAAGGGGTTTTAAAGGTTTCTGGTTCGAGAAACAGAAAATCGAT 1136
||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||
Sbjct 1116 TGTTGAGAAAGAGATCAAAGGTGTTTTAAAGGTTTCTGGTTCGAAAAACAGAAAAGCAAT 1175
Query 1137 TGAGTCTTCTTCACTGCGTCAGGTTCGATTCTCCACGTCATCGCCGGTTTCATACCCAAC 1196
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1176 GGAGTCTCCTTCACTGCGTCAGGTTCGATTCTCCACATCATCGCCGGTTTCATACCCGAC 1235
Query 1197 GTCTCCGGCAATCTCTCCACGGTTGTTAGAAGCCACCAAGAATTTCAATGCTTTCTTGGA 1256
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1236 GTCTCCGGCGATCTCTCCACGGTTATTAGAAGCCACCAAGAATTTTAATGCTTTCTTGGA 1295
Query 1257 AGCTCAAGCCGTTTAAATGATGATGGAGC-CTTAACTACAATATAAAATATAAGCTATAA 1315
|||||||||||||||||||||| | | | |||||||||||||||||||||||||| |||
Sbjct 1296 AGCTCAAGCCGTTTAAATGATG--G-A-CTCTTAACTACAATATAAAATATAAGCTGTAA 1351
Query 1316 TATCCCAAAGTCTTGTTAAATATTTTTCTTTGGGAAATTAA 1356
||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1352 TATACCAAAGTCTTGCTAAATATTTTTCTTTGGGAAATTAA 1392
Score = 267 bits (144), Expect = 3e-70
Identities = 190/210 (90%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 361 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCCTC 420
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 334 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACAG-C-C 391
Query 421 TCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 480
|| | ||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 392 TC---C-CAA-----AC-TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAAC 441
Query 481 AAGGAACAAGACAGCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 540
||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 442 AAGGACCAAGACAGCCTTCCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTC 501
Query 541 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 570
|||||||| |||||||||||||||||||||
Sbjct 502 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 531
Score = 267 bits (144), Expect = 3e-70
Identities = 190/210 (90%), Gaps = 12/210 (6%)
Strand=Plus/Plus
Query 295 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACAGCC-T 353
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct 400 TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGTTCAGAAACAAGGACCAAGACAGCCTT 459
Query 354 -----CTCAA--AC----TCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAAC 402
||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 460 CCAAACTCAACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAAC 519
Query 403 AAGGAACAAGACAGCCTCTCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTC 462
|||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 520 AAGGAACAAGACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTC 579
Query 463 ATGCGGGCGCTCAGAAACAAGGAACAAGAC 492
|||||||| |||||||||||||||||||||
Sbjct 580 ATGCGGGCCCTCAGAAACAAGGAACAAGAC 609
Score = 156 bits (84), Expect = 6e-37
Identities = 124/141 (88%), Gaps = 12/141 (9%)
Strand=Plus/Plus
Query 286 ACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAA 345
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 469 ACCACTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCCCTCAGAAACAAGGAACAA 528
Query 346 GACAGCCTC------TCAA--ACT----CTCCTAAACAACGTTCAGGTCTCATGCGGGCG 393
||||||||| |||| ||| |||| ||||||||||||||||||||||||||
Sbjct 529 GACAGCCTCCCAAACTCAACCACTGGTTCTCCAAAACAACGTTCAGGTCTCATGCGGGCC 588
Query 394 CTCAGAAACAAGGAACAAGAC 414
|||||||||||||||||||||
Sbjct 589 CTCAGAAACAAGGAACAAGAC 609
Score = 154 bits (83), Expect = 2e-36
Identities = 121/137 (88%), Gaps = 12/137 (9%)
Strand=Plus/Plus
Query 434 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGACA 493
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGACA 388
Query 494 GCCTCCCAAACTCAACCTCTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCA 553
||||||||||||| || || ||||||||||||||||||||||||||| |||
Sbjct 389 GCCTCCCAAACTC----TC--CT------AAACAACGTTCAGGTCTCATGCGGGCGTTCA 436
Query 554 GAAACAAGGAACAAGAC 570
|||||||||| ||||||
Sbjct 437 GAAACAAGGACCAAGAC 453
Score = 99.0 bits (53), Expect = 1e-19
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 512 CTGCTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAAGGAACAAGAC 570
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 329 CTGGTTCTCCTAAACAACGTTCAGGTCTCATGCGGGCGCTCAGAAACAGGGAACAAGAC 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5