BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494519
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44650.1 | Symbols: CEST, AtCEST, Y3IP1 | Encodes a nucleus-... 1777 0.0
> AT5G44650.1 | Symbols: CEST, AtCEST, Y3IP1 | Encodes a nucleus-encoded
thylakoid protein, cooperates with the plastid-encoded
Ycf3 protein in photosystem i assembly. Also induces tolerance
to multiple environmental stresses and reduces photooxidative
damage. | chr5:18013149-18015403 FORWARD LENGTH=1201
Length=1201
Score = 1777 bits (962), Expect = 0.0
Identities = 1127/1205 (94%), Gaps = 17/1205 (1%)
Strand=Plus/Plus
Query 1 AATAGTAATTTTCCAGTATTATCCAATTAGCAGTTGTTTC-GAGGCTATCTACATGTATC 59
|||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| ||
Sbjct 3 AATAGTAATTTTATAGTATTATCCAAGTAGCAGTTG-TTCGGAGGCTATCTACATGTCTC 61
Query 60 AGCCACTCGTATTATTCTCCAATCTAGAAAAATTCAAAATTTTCAATTTCCCCTTTTTTA 119
|||||||||||||||||||||||||| |||||||| ||||||||||| | |||||| |||
Sbjct 62 AGCCACTCGTATTATTCTCCAATCTATAAAAATTC-AAATTTTCAATCT-CCCTTTCTTA 119
Query 120 AGATTAAACTTGACAAA-TTGATAATTTGAATCGTCTTCTTCCTCCGGGAATTTCAATCG 178
|||||||| || |||| |||| | |||| ||||||||||||||| || |||||||||||
Sbjct 120 AGATTAAAAGTGGCAAAGTTGAGATTTTG-ATCGTCTTCTTCCTCTGGAAATTTCAATCG 178
Query 179 AAACTATATCCTCAGAGATGCAGAATCTGTGAATTTATACAGACGAATTTTAC-tttttt 237
|||||||||| |||||||||||||||||||||| || || | |||||||| || ||||||
Sbjct 179 AAACTATATCTTCAGAGATGCAGAATCTGTGAAATTGTAGAAACGAATTTCACATTTTTT 238
Query 238 tttGAAGAAATGGTGACGCAGATATTTCAGTTGCCGTTACAGTACTGTGTTTCGAGTTTT 297
|||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 239 TTTGAAGAAATGACGACGCAGATATTTCAGTTGCCGTTAAAGTACTGTGCTTCGAGTTTT 298
Query 298 TCTTCCGCCGGCAAACGGAATTACGGTGTTTCTTCGTCGCCGACTCCGGTTGTTATTTGT 357
|||||| ||||| ||||||||||||||| |||||| |||||| ||||| |||| ||||||
Sbjct 299 TCTTCCACCGGCCAACGGAATTACGGTGCTTCTTCTTCGCCGTCTCCGATTGTAATTTGT 358
Query 358 AAGAGTAATGGAATTTCCGATGATCTTTGGGTTAAGCGGAGGAGGAAGAATCAGAGATTC 417
|||||||||||||||||||||| ||||||||| |||||||||| ||| |||| ||||||
Sbjct 359 AAGAGTAATGGAATTTCCGATGGTCTTTGGGTGAAGCGGAGGAAGAACAATCGGAGATTT 418
Query 418 GGTAGTGTGATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 477
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTAGTTTAATAGTTAAGCAGGAGAAAGGAGACGTGACGGAGATTCGAGTTCCGGTTCCG 478
Query 478 TTAACGTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAG-A-A-G--A-C 531
||||| ||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 479 TTAACTTTGGAGCAACAAGAGAAGGAGAAACAAAATCGAGATGATGAAGAAGATGAAATC 538
Query 532 GAAGAAGGAGAAGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGT-ATT 590
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 GATGAAGGAGATGTAGATCCTGAAGATCTCAAATACGTCAATGAAATCAAACGGGTAATT 598
Query 591 GGAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACAATTATGAT 650
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 -GAGCTTCTTAGGAGGAATAGAGATATGATCTTCAGTGAGGTTAAGTTGACTATTATGAT 657
Query 651 TGAGGATCCAAGGGAAGTGGAAAGAAGGAGGCTGCTTGGAATAGAAGATGCAGATACTCC 710
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 TGAGGATCCAAGGGAACTGGAAAGAAGGAGGCTTCTTGGAATAGAAGATGCAGATACTCC 717
Query 711 AAGTAGAGAGGATTTGGCTGAAGCAC-TGGAGCAGGTAAATGATGGGAAAATCCCTAAAG 769
||| ||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 718 AAGCAGAGATGATTTGGCTGAAGC-CTTGGAACAGGTAAATGATGGGAAAATCCCTAAAG 776
Query 770 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ATCGTGCAACTCTTCGGATGCTGCATGAGGAAATGATCCGTTGGCCAAATTTAGAGGTTG 836
Query 830 AGGTTTCAAAGAAGCAACGAGGAAAATCAATGTACGCTAAATCCACAGACACCGGAATAG 889
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 837 AGGTTTCAAAGAAGCAACGAGGAAAGTCAATGTACGCTAAATCCACAGACACTGGAATAG 896
Query 890 ATCCAAAAGAAGCAGCCAAGAGACTCAACATAGAATGGGATTCAGCTGCTGCAATTGAAG 949
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 897 ATCCAAAAGAAGCAGCCAAGAGACTCAACGTCGAATGGGATTCAGCTGCTGCAATTGAAG 956
Query 950 AAGCCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCATTGT 1009
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 957 AAGTCGATGTCGATGATGAACAAGGAGTAGTAACCAAAGTCGCGGGCTATGGAGCGTTGT 1016
Query 1010 ACTTTGTCTCGGCTTTACCAGTTATCATCGGTATCTCTGTTGTATTAATCTTGTTTTACA 1069
|||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1017 ACTTCGTCTCAGCTTTACCAGTTATCATTGGTATCTCTGTTGTATTAATTTTGTTTTACA 1076
Query 1070 ATTCCCTTCAGTAGAGTCAAATCCATTTAGTTGTTATACACACCAGCACCAATGACCCAT 1129
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1077 ATTCCCTACAGTAGAGTCAAATCCATTTAGTTGTTATACACACCACCACCAATGACCCAT 1136
Query 1130 CATTGATGTTTTGTAACTTAAGAACATGAAATGAATTTTTCAATTATTTAATCATCTTCT 1189
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 CATTGATGTTTTGTAACTTAAGAACATGAAATGAGTTTTTCAATTATTTAATCATCTTCT 1196
Query 1190 TCCTT 1194
|||||
Sbjct 1197 TCCTT 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5