BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494525
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44620.1 | Symbols: CYP706A3 | cytochrome P450, family 706, ... 1397 0.0
AT4G12330.1 | Symbols: CYP706A7 | cytochrome P450, family 706, ... 483 3e-135
> AT5G44620.1 | Symbols: CYP706A3 | cytochrome P450, family 706,
subfamily A, polypeptide 3 | chr5:17997779-17999558 REVERSE
LENGTH=1708
Length=1708
Score = 1397 bits (756), Expect = 0.0
Identities = 1064/1202 (89%), Gaps = 64/1202 (5%)
Strand=Plus/Plus
Query 292 AACGCCATGTTGGATTCTTCCACTGACCTCCGTCGCCGAGAGACTCGGAAAACCGTCCGG 351
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 473 AACGCCATGTTGGATTCCTCCACTGACCTCCGTCGCCGAGAGACTCGGCAAACCGTCCGG 532
Query 352 TATTTGGCGGGCCAGGCTCGGGTCGGTTCACCGGTTAACTTGGGAGAACAAATATTCTTG 411
|||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 533 TATTTGGCGGACCAGGCTCGGGTCGGTTCACCAGTTAACCTGGGAGAACAAATATTCTTG 592
Query 412 ATGATGTTGAATGTTGTGACGCAGATGCTATGGGGCAGGACGGTCAAAGGCA-AAGAGAG 470
||||||||||||||||||||||||||||||||||| | ||||| |||| | |||||||
Sbjct 593 ATGATGTTGAATGTTGTGACGCAGATGCTATGGGGAACAACGGT-TAAGGAAGAAGAGAG 651
Query 471 GGAGAG-TGTCGTAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAG 529
|||| | ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GGAG-GTTGTTGGAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAG 710
Query 530 TGCCCAATATATCCGACTTTTTTCCGGCATTGAGCCGATTTGATCTACAAGGTTTGGTTA 589
|||||||||| ||||||||||| |||| ||||||||| |||||||| || ||||||| ||
Sbjct 711 TGCCCAATATCTCCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTTTGGCTA 770
Query 590 AGCGTATGCGAGGACCAGCTCAGAGGATGGACCAGATGTTTGACCGGATTATTAACCAAC 649
||||||||||| |||| ||||| || ||||| |||||||| |||||||| ||||||||||
Sbjct 771 AGCGTATGCGAAGACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTAACCAAC 830
Query 650 GGTTGGGGATGGATAGGGA-A--AGTGACTGGAAAACTGAAGATTTTCTGGATG-C--CT 703
||||||||||||||||||| | |||||| ||| | ||| |||||||| || | | |
Sbjct 831 GGTTGGGGATGGATAGGGACAGTAGTGACGGGAGAGCTGTGGATTTTCTAGACGTCTTGT 890
Query 704 T----GT------TGAA-AA--T----A-A--AA-TTGACCATGAACGATGTCAAGGCTC 742
| || |||| || | | | || ||||||||||||||||||||||| |
Sbjct 891 TGAAAGTCAAGGATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACGATGTCAAGGC-C 949
Query 743 -TGCTCGTGGACATGGTGCTCGGTGGTACAGACACATCACTACACATCATAGAATTCGCG 801
| ||| |||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 950 GTACTCATGGACATGGTGCTCGGTGGTACAGACACATCACTGCACGTAATAGAATTCGCG 1009
Query 802 ATGCCCGAGCTATTACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAA 861
||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1010 ATGGCCGAGCTATTACACAACCCCGATATCATGAAGAGAGCTCAACAAGAGGTTGACAAA 1069
Query 862 GTTGTGGGCAAAGAAAAGGTTGTGGACGAATCTCACATCTCTAAACTTCCATACATTCTT 921
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1070 GTTGTGGGAAAAGAAAAAGTTGTGGAAGAATCTCACATCTCTAAACTTCCATACATTCTC 1129
Query 922 GCCATTATGAAAGAAACTCAAAGGCTTCACACGATTGTTCCACTCCTTGTTCCTCGCCGA 981
||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||
Sbjct 1130 GCCATTATGAAAGAAACTCTAAGGCTTCACACGGTTGCTCCACTCCTTGTTCCTCGGCGC 1189
Query 982 CCGTCAAAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATC 1041
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CCGTCACAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATC 1249
Query 1042 AATGTGTGGGCGATCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCC 1101
|| | |||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1250 AACGCGTGGGCAATCCATAGGAACCCGAATGTATGGGAGAATCCACTGAAGTTTGATCCC 1309
Query 1102 GACAGGTTTCTTGATAAGTCTTATGACTTCAAGGGAAATGACTTCAACTATTTACCGTTT 1161
||||||||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 1310 GACAGGTTTCTGGATATGTCTTATGACTTCAAAGGAAATGACTTCAATTATCTACCGTTT 1369
Query 1162 GGGTCTGGTCGTAGAATATG--TG----TGG-T-TG----------TT---CTTTACAAT 1200
|||||||||||||| ||||| || ||| | || || |||||||||
Sbjct 1370 GGGTCTGGTCGTAGGATATGCGTGGGAATGGCTATGGGCGAGAGGGTTGTTCTTTACAAT 1429
Query 1201 CTCGCTACGTTATTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTG 1260
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1430 CTCGCTACGTTTTTGCATTCTTTTGATTGGAAAATTCCGCAAGGAGAGAGAGTGGAGGTC 1489
Query 1261 GAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCC-TTACT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1490 GAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCCGTT-CT 1548
Query 1320 AAGGTTGTCCGATCCAAATCTTTATCTTTAGAGT-TTCAAGTTCAACACAAAGAAATACT 1378
||||||||||||||||||||||||||| ||| || || ||||||||||||||| || ||
Sbjct 1549 AAGGTTGTCCGATCCAAATCTTTATCTCTAGGGTCTT-AAGTTCAACACAAAGGAA--CT 1605
Query 1379 GAATGTTATACAG--CGGGCTTATTTGTGT-TCT-GTATTATTTAATAAAAGCCGTACAA 1434
||||||| |||| || |||||||||||| ||| |||| |||||||||||||||| |||
Sbjct 1606 GAATGTTCTACAATTCGAGCTTATTTGTGTGTCTTGTATGATTTAATAAAAGCCGTTCAA 1665
Query 1435 TG 1436
||
Sbjct 1666 TG 1667
Score = 291 bits (157), Expect = 2e-77
Identities = 236/272 (87%), Gaps = 13/272 (5%)
Strand=Plus/Plus
Query 14 CAAACCGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGATTCCT 73
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 136 CAAACGGCGGTCTCCACCGTTGCCGCCGGGACCTTGGGGCCTTCCCATTATCGGAAACCT 195
Query 74 TCCATTCCTCAAACCGGAG-----------CTTCCAAGAGTTGGCTAAAAAGCATGGTCC 122
|||||||||| |||||||| |||||||| | ||||||||||||| |||||
Sbjct 196 TCCATTCCTCCAACCGGAGCTTCACACCTACTTCCAAGGGCTGGCTAAAAAGCACGGTCC 255
Query 123 CATTTTCAAACTCTGGCTCGGGGCGAAACTGACAATCGTGGTCACCTCTTCTGAAGTAGC 182
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 256 CATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGGTCACCTCTTCTGAAGTAGC 315
Query 183 CCAAGATATTCTCAGAACGAATGATATCATCTTCGCAAACCACGATGTCCCTGCCGTTGC 242
||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 316 GCAAGAGATTCTCAAAACGAATGACATCATCTTCGCGAACCACGATGTCCCTGCTGTGGG 375
Query 243 TCCC-GCCAATACGTACGGTGGTATGGAGATC 273
||| | || ||||| ||||||| |||||||
Sbjct 376 -CCCTGTTAACACGTATGGTGGTACGGAGATC 406
> AT4G12330.1 | Symbols: CYP706A7 | cytochrome P450, family 706,
subfamily A, polypeptide 7 | chr4:7317560-7319739 REVERSE
LENGTH=1854
Length=1854
Score = 483 bits (261), Expect = 3e-135
Identities = 821/1080 (76%), Gaps = 83/1080 (8%)
Strand=Plus/Plus
Query 342 AACCGTCCGGTATTTGGCGGGCCAGGCTCGGGTC-GGTTCACCGGTTAAC-TTGGGAGAA 399
||| |||||||||||||| | || |||||||| | |||| |||||||| || ||||||
Sbjct 591 AACAGTCCGGTATTTGGCAGACCGGGCTCGGGCCGGGTT-GGCGGTTAACGTT-GGAGAA 648
Query 400 CAAATATTCT-TGATGATGTTGAATGTTGTGACGCAGATGCTATGGGGCAG-GAC-GGT- 455
|||||||| | | | ||| || ||||| ||||| |||||| | ||||| || || | |
Sbjct 649 CAAATATT-TGTCACGATATTAAATGTGGTGACTCAGATGTTGTGGGG-AGAAACTGTTG 706
Query 456 C-AAAGGCAAAGAGAGGGAGAGTGTCGTAGCCGAGTTCTTAGAGGTGATTA-GAGAGATG 513
| | | | | ||||| |||| || | ||| || || || || |||||| | || ||
Sbjct 707 CGGACGACGAGGAGAGAGAGAAAGTTGGAGCTGAATTTTTGGAATTGATTACG-GAAAT- 764
Query 514 AA-CGACCTCCTGCTAGTGCCCAATATATCCGACTTTTTT-CCGGCATTGAGCCGATTTG 571
|| || | || | ||| ||| | || || |||||| |||| |||||||| ||||
Sbjct 765 AATTGATGTTGTGGGAAAGCCAAATGTCTCTGA-TTTTTTCCCGGTTTTGAGCCGGTTTG 823
Query 572 ATCTACAAGGTTTGGTTAAGCGTATGCG-AGGACCAGCTCAGAGGATGGACCAGATGTTT 630
| || || ||||||| ||||||| |||| | || | |||||||||||||||| ||||||
Sbjct 824 ACCTTCAGGGTTTGGCTAAGCGTGTGCGTA-GATCGGCTCAGAGGATGGACCGGATGTTC 882
Query 631 GACCGGATTATTAA-CCAACGGTTGGGGATGGAT-A-GG--G-AAAGTG-AC--TGGA-A 680
|||||||||| ||| |||||| |||| |||||| | || | |||| | || |||| |
Sbjct 883 GACCGGATTA-TAAGTCAACGGATGGGAATGGATAAGGGAAGTAAAGGGAACGGTGGAGA 941
Query 681 --AACTGAAGATTTT-CTGGATGCCT--TGTTGAAAAT-AAAA-TTGACCATGAACGATG 733
||| | |||| || ||| || | |||| || |||| || |||||||| |||
Sbjct 942 TTTTTTGATGGTTTTGTTGAATG-CTAAGGATGAAGATGAAAACATGTCCATGAACCATG 1000
Query 734 TCAAGG-CTCTGCTCGTGGACATGGTGCTCGGTGGTACAGACACATCACT--ACACATCA 790
|||||| || |||| |||| |||||||| ||||||||||||||||| | ||||| |
Sbjct 1001 TCAAGGCCT-TGCTAATGGATATGGTGCTTGGTGGTACAGACACATCTTTGAACACA--A 1057
Query 791 TAGAATTCGCGATGCCCGAGC-TATTACACAACCCGGATATCATGAAGAGAGCTCAACAA 849
|||| ||||| ||| | |||| || || |||| | ||| |||||||||||||||||||||
Sbjct 1058 TAGAGTTCGCAATGGCAGAGCTTA-TAAACAAACTGGAGATCATGAAGAGAGCTCAACAA 1116
Query 850 GAGCTTGACAAAGTTGTGGGCAAAGAA-AAGGTTGTGGACGAATCTCACATCTCTAAACT 908
||||||||||| |||||||| ||| || || | || || ||| || ||| |||||||
Sbjct 1117 GAGCTTGACAAGGTTGTGGGGAAA-AACAACATCGTCGAAGAAAAACATATCACTAAACT 1175
Query 909 TCCATACATTCT-TGCCATTATGAAAGAAACTCAAAGGCTTCACAC-GATTGTTCCACTC 966
|||||||||||| | |||||||||||||||| | |||||||||| | | | |||| ||
Sbjct 1176 TCCATACATTCTCT-CCATTATGAAAGAAACCCTAAGGCTTCACCCAGCTC-TTCCTCTT 1233
Query 967 CTTGTTCCTCGCCGACCGTCAAAAACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGAT 1026
|| | |||||| | || || ||||||| || | || |||| ||| || ||||| |||
Sbjct 1234 CTAATACCTCGCTGCCCATCTGAAACCACGGTTATAGGTGGCTACACAATTCCTAATGAT 1293
Query 1027 TCAAAGATTTTCATCAATGTGTGGGCGATCCATAGGAACCCCAATGTATGGGAGAATCCA 1086
|| ||| |||||||||||||||||||||| ||||| || || || ||||||||||||||
Sbjct 1294 TCTAAGGTTTTCATCAATGTGTGGGCGATTCATAGAAATCCGAACGTATGGGAGAATCCG 1353
Query 1087 CTAAAGTTTGATCCCGACAGGTTTCTTGATAA-GTCTTATGACTTCAAG-GGAAATGACT 1144
| ||||| |||| || |||||||||||||| | ||| ||||| | | || |||||||
Sbjct 1354 TTGGAGTTTAATCCTGATAGGTTTCTTGATAAAGG-TTACGACTTTA-GTGGTAATGACT 1411
Query 1145 -TCAACTATTTACCGTTTGGGTCTGGTCGTAGAATATGTG------TGG---T------- 1187
| | ||||| |||||||| ||||| || ||||| |||| ||| |
Sbjct 1412 AT-AGTTATTTCCCGTTTGGATCTGGCCGGAGAATTTGTGCGGGAATGGCCATGGCCGAG 1470
Query 1188 ----T-GTTCTTTACAATCTCGCTACG-TTATTGCATTCTTTTGATTGGAAAATTCCACA 1241
| |||||||||||||| || ||| || ||||||||||||||||||| |||| |
Sbjct 1471 AAAGTTGTTCTTTACAATCTTGCAACGCTT-TTGCATTCTTTTGATTGGAGAATTGGGGA 1529
Query 1242 AGGAGAGAGAGTGGAGGTGGAGGAGAAGTTTGGGATCGTGTTGGAGCTAAAGAATCCACT 1301
|||||||| ||||||| | ||||||||||||||||| | ||| || | |||||||||||
Sbjct 1530 AGGAGAGAAAGTGGAGCTCGAGGAGAAGTTTGGGATTTTATTGAAGTTGAAGAATCCACT 1589
Query 1302 TGTTGCCACGCCCTTACTAAGGTTGTCCGATCCAAATCTTTATCTTTAG-AGTTTCAAGT 1360
|||||| || ||| | ||||| ||||| |||||||| |||| |||||| ||||| ||||
Sbjct 1590 TGTTGCAACACCCGTGCTAAGATTGTCGGATCCAAACCTTTTTCTTTAACAGTTT-AAGT 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5