BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494529 Length=446 Score E Sequences producing significant alignments: (Bits) Value AT5G44568.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 510 4e-144 > AT5G44568.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 19 Blast hits to 19 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:17961201-17962202 REVERSE LENGTH=462 Length=462 Score = 510 bits (276), Expect = 4e-144 Identities = 396/452 (88%), Gaps = 16/452 (4%) Strand=Plus/Plus Query 1 TATATATATGTCTTGTAATGGAGTTTTGAGAGAGTCGAGCACTTAACTAATGGCTACAAA 60 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 8 TATATATGTGTCTTGTAATGGAGTTTTGAGAGAGTCGAGCACTTAAGTAATGGCTACAAA 67 Query 61 GACATCAAATTTAGTTCCTCTTCTTCTGTCTTTGTTTATTCTGCTCTTATTTACCTTATC 120 |||||||||||||| || |||||||||||||||||||||||||||||| |||| |||||| Sbjct 68 GACATCAAATTTAGGTCATCTTCTTCTGTCTTTGTTTATTCTGCTCTTGTTTATCTTATC 127 Query 121 TCAAGTAAGACTTGCCCAGGCCAAACGTCTCCAACAAAGGAACGAATTGCGTTTGGATTG 180 |||||| || | |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 128 TCAAGTTGGAGTCGCCCAGGCCAAACGTCTCCAACAAAGGAACAAATTGCGTTTGGATTG 187 Query 181 TGTtcctcttcctcctccccctccccctctccGTCGCATCGTCAAACCTCCTATCGCTTC 240 ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 188 CGTTCCTCTTCCTCCTCCCCCTCCACCTCTCCGTGGCATCGTCAAACCTCCTATCGCTTC 247 Query 241 GTTTCCCTCTAAATCGCCTAAAGATAAAGGCCCATAACCCA-AAGTCATCACCAGAAGTG 299 ||||| |||| ||||||||||||||||||||||||| ||| ||||||||| || || Sbjct 248 GTTTCACTCTGCATCGCCTAAAGATAAAGGCCCATAAGCCATAAGTCATCAT-AG---TG 303 Query 300 AAGGATAAGAGGTCAAGAGAgtttttataagtattttgttatataaaaaccatgttgtat 359 |||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct 304 CAGGATAAGAGGTCAAGAGAGTTTT-ATAAGTATTTTGTTATACAAAA-CCATGTTGTAT 361 Query 360 gttatatatcatatttcttttttataAATTGTTATTTAGtttttttt-----tGTATACA 414 ||| | | ||||| | || | | || || ||| || | | |||| ||| Sbjct 362 CATATTTTT--TATTTATAGTT-A-AGGTTTTTTTTTCGTGTCTACAACACATGTACACA 417 Query 415 CACAATCAGACGTATATCTAGAATAACATAAA 446 |||||||||||||||||||||||||| ||||| Sbjct 418 CACAATCAGACGTATATCTAGAATAAAATAAA 449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21212990078 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5