BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494529
Length=446
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44568.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 510 4e-144
> AT5G44568.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 19 Blast hits to 19
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:17961201-17962202 REVERSE LENGTH=462
Length=462
Score = 510 bits (276), Expect = 4e-144
Identities = 396/452 (88%), Gaps = 16/452 (4%)
Strand=Plus/Plus
Query 1 TATATATATGTCTTGTAATGGAGTTTTGAGAGAGTCGAGCACTTAACTAATGGCTACAAA 60
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 8 TATATATGTGTCTTGTAATGGAGTTTTGAGAGAGTCGAGCACTTAAGTAATGGCTACAAA 67
Query 61 GACATCAAATTTAGTTCCTCTTCTTCTGTCTTTGTTTATTCTGCTCTTATTTACCTTATC 120
|||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 68 GACATCAAATTTAGGTCATCTTCTTCTGTCTTTGTTTATTCTGCTCTTGTTTATCTTATC 127
Query 121 TCAAGTAAGACTTGCCCAGGCCAAACGTCTCCAACAAAGGAACGAATTGCGTTTGGATTG 180
|||||| || | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 128 TCAAGTTGGAGTCGCCCAGGCCAAACGTCTCCAACAAAGGAACAAATTGCGTTTGGATTG 187
Query 181 TGTtcctcttcctcctccccctccccctctccGTCGCATCGTCAAACCTCCTATCGCTTC 240
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 188 CGTTCCTCTTCCTCCTCCCCCTCCACCTCTCCGTGGCATCGTCAAACCTCCTATCGCTTC 247
Query 241 GTTTCCCTCTAAATCGCCTAAAGATAAAGGCCCATAACCCA-AAGTCATCACCAGAAGTG 299
||||| |||| ||||||||||||||||||||||||| ||| ||||||||| || ||
Sbjct 248 GTTTCACTCTGCATCGCCTAAAGATAAAGGCCCATAAGCCATAAGTCATCAT-AG---TG 303
Query 300 AAGGATAAGAGGTCAAGAGAgtttttataagtattttgttatataaaaaccatgttgtat 359
|||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 304 CAGGATAAGAGGTCAAGAGAGTTTT-ATAAGTATTTTGTTATACAAAA-CCATGTTGTAT 361
Query 360 gttatatatcatatttcttttttataAATTGTTATTTAGtttttttt-----tGTATACA 414
||| | | ||||| | || | | || || ||| || | | |||| |||
Sbjct 362 CATATTTTT--TATTTATAGTT-A-AGGTTTTTTTTTCGTGTCTACAACACATGTACACA 417
Query 415 CACAATCAGACGTATATCTAGAATAACATAAA 446
|||||||||||||||||||||||||| |||||
Sbjct 418 CACAATCAGACGTATATCTAGAATAAAATAAA 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21212990078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5