BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494532
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:1794... 1336 0.0
AT5G44562.1 | Symbols: | other RNA | chr5:17947617-17948398 RE... 375 3e-103
> AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17945957-17948400
FORWARD LENGTH=971
Length=971
Score = 1336 bits (723), Expect = 0.0
Identities = 830/880 (94%), Gaps = 14/880 (2%)
Strand=Plus/Plus
Query 23 TCTCGATTTGAGAAGAGAGAAGAGAAATCGCCATGAACATCTTCAGGAAGAAGACCACTC 82
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 93 TCTCGATTTGAGAAGTGAGAAGAGAAATCGCCATGAACATTTTCAAGAAGAAGACCACTC 152
Query 83 CCAAAGATGCTCTTCGTACCAGTAAGAGAGAAATGGCTGTGGCTACACGAGGTATCGAAC 142
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 153 CCAAAGATGCTCTTCGTACTAGTAAGAGAGAAATGGCTGTTGCTACTCGAGGTATCGAAC 212
Query 143 GGGAGATTACATCTCTTCAACTAGAGGAGAAGAGACTAGTTGCAGAGATCAAGAAAACAG 202
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 213 GGGAGATTACATCTCTTCAACTAGAGGAGAAGAGACTAGTTGCAGAAATCAAGAAAACAG 272
Query 203 CTAAGACTGGAAATGAGGCTGCCACAAAGATTTTAGCTCGTCAACTTGTTCGATTGAGGC 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 CTAAGACTGGAAATGAGGCTGCCACAAAGATTTTAGCTCGTCAACTTGTTCGATTGAGGC 332
Query 263 AACAGATTACCAACTTACAGGGAAGCCGTGCTCAAATTAGGGGTGTGACGACTCATACAC 322
||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct 333 AACAGATTACCAACTTACAAGGAAGCCGTGCTCAGATTAGGGGTGTAACAACTCATACAC 392
Query 323 AGGCTCTGTATGCCAGCACTTCAATATCATCTGGCATGAAAGGTGCTACCAAAGCTATGG 382
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 393 AGGCTCTGTATGCCAGCACTTCGATTTCATCTGGTATGAAAGGTGCTACCAAAGCTATGG 452
Query 383 TTGCAATGAACAAGCAAATGGCACCCACTAAACAAGCCAAGGTGATTAAGGATTTCCAGA 442
||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 453 TTGCAATGAACAAGCAAATGGCACCAACGAAACAAGCCAAGGTGATTAAAGATTTCCAAA 512
Query 443 AGCAGTCGGCACAGCTAGACATGACGATAGAGATGATGTCAGAGGCAATTGATGAAACAC 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AGCAGTCGGCACAGCTAGACATGACGATAGAGATGATGTCAGAGGCAATTGATGAAACAC 572
Query 503 TTGACAAAGATGAGGCTGAAGAAGAAACCGAAGATCTCACTAACCAAGTTCTTGATGAGA 562
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 573 TTGACAAAGATGAGGCTGAAGAAGAAACAGAAGATCTCACTAACCAGGTTCTTGATGAGA 632
Query 563 TTGGTGTTGGTGTTGCATCACAGCTATCTTCAGCTCCAAAAGGTCGGATTGCTACAAAAA 622
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 633 TTGGTGTTGGTGTTGCATCTCAGTTATCTTCAGCTCCAAAAGGTCGGATTGCTACGAAAA 692
Query 623 CCGCAGCTCCTCCCGCTTCCACTGCAGCAACTAAAAAGAACTCTGAATCAAGTGAAGTGG 682
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 693 CCGCAGCTCCTCCCGCTTCCACTGCAGCTACTAACAAGAACTCTGAATCAAGTGAAGTGG 752
Query 683 ATGAGCTTGAGAAGAGGTTGGCTTCGCTTCGACGAATCTGAGATGTATGAAAA-----GA 737
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 753 ATGAGCTTGAGAAGAGGTTGGCTTCGCTACGACGAATCTGAGATTTATGAAAAACAAAGA 812
Query 738 --GA-G----CAGCTTCCTTTCTTTTTGTTATCTCTGTATAAATCTGCTGAAACTTAAGC 790
|| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 813 AAGAAGAGAGCAGCTTCCTTT-TTTTTGTTATCTCTGTATAAATCTGCTGAAACTTAAGC 871
Query 791 TGTTTGATACTAAGATTGATCATCAGAAAACTAA-AAGGCTTTTTAAGAAAAGTTGAAGA 849
||||||||| |||||||| ||||||||||||| |||||||||||||||| | |||||
Sbjct 872 TGTTTGATATTAAGATTGGCCATCAGAAAACTATTAAGGCTTTTTAAGAAATGAAGAAGA 931
Query 850 CATGTATACACATATTTTACTAAAGATAGTTCCTCTACGT 889
||||||||||||||||||| || |||||||||||||||||
Sbjct 932 CATGTATACACATATTTTATTATAGATAGTTCCTCTACGT 971
> AT5G44562.1 | Symbols: | other RNA | chr5:17947617-17948398
REVERSE LENGTH=696
Length=696
Score = 375 bits (203), Expect = 3e-103
Identities = 286/323 (89%), Gaps = 18/323 (6%)
Strand=Plus/Minus
Query 582 ACAGCTATCTTCAGCTCCAAAAGGTCGGATTGCTACAAAAACCGCAGCTCCTCCCGCTTC 641
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 322 ACAGTTATCTTCAGCTCCAAAAGGTCGGATTGCTACGAAAACCGCAGCTCCTCCCGCTTC 263
Query 642 CACTGCAGC--A-ACTAAAAAG-AACTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGA 697
||||||||| | ||| | | |||||||||||||||||||||||||||||||||||
Sbjct 262 CACTGCAGCTTAGTTTAACTTGCAGCTCTGAATCAAGTGAAGTGGATGAGCTTGAGAAGA 203
Query 698 GGTTGGCTTCGCTTCGACGAATCTGAGATGTAT----------G-AA-AAGAGAGCAGCT 745
||||||||||||| ||||||||||||||| ||| | || ||||||||||||
Sbjct 202 GGTTGGCTTCGCTACGACGAATCTGAGATTTATGAAAAACAAAGAAAGAAGAGAGCAGCT 143
Query 746 TCCTTTCTTTTTGTTATCTCTGTATAAATCTGCTGAAACTTAAGCTGTTTGATACTAAGA 805
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 142 TCCTTT-TTTTTGTTATCTCTGTATAAATCTGCTGAAACTTAAGCTGTTTGATATTAAGA 84
Query 806 TTGATCATCAGAAAACTAA-AAGGCTTTTTAAGAAAAGTTGAAGACATGTATACACATAT 864
||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 83 TTGGCCATCAGAAAACTATTAAGGCTTTTTAAGAAATGAAGAAGACATGTATACACATAT 24
Query 865 TTTACTAAAGATAGTTCCTCTAC 887
|||| || |||||||||||||||
Sbjct 23 TTTATTATAGATAGTTCCTCTAC 1
Score = 202 bits (109), Expect = 5e-51
Identities = 115/118 (97%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 468 GATAGAGATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GATAGAGATGATGTCAGAGGCAATTGATGAAACACTTGACAAAGATGAGGCTGAAGAAGA 479
Query 528 AACCGAAGATCTCACTAACCAAGTTCTTGATGAGATTGGTGTTGGTGTTGCATCACAG 585
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 478 AACAGAAGATCTCACTAACCAGGTTCTTGATGAGATTGGTGTTGGTGTTGCATCTCAG 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5