BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494537
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44500.1 | Symbols: | Small nuclear ribonucleoprotein famil... 1587 0.0
AT4G20440.1 | Symbols: smB | small nuclear ribonucleoprotein as... 582 2e-165
> AT5G44500.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr5:17927453-17929463 FORWARD LENGTH=1132
Length=1132
Score = 1587 bits (859), Expect = 0.0
Identities = 1024/1101 (93%), Gaps = 22/1101 (2%)
Strand=Plus/Plus
Query 4 AATTCTCCGGCGTATTCAAGTCGCCGGCGAAAATGTCGATGTCGAAGAGCTCCAAGATGC 63
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 21 AATTCTCCGGCGTATACAAGTCGCCGGCAAAAATGTCGATGTCGAAGAGCTCCAAGATGC 80
Query 64 TTCAGTTCATAAACTACAGGATGCGAGTAACGATCCAAGACGGACGTCAGCTAATCGGAA 123
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 81 TTCAGTTCATAAACTACAGGATGCGAGTAACAATCCAAGACGGAAGACAGCTAATCGGAA 140
Query 124 AATTCATGGCGTTCGATCGTCACATGAATCTCGTTCTCGGCGACTGCGAAGAGTTTCGGA 183
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct 141 AATTCATGGCGTTCGATCGCCACATGAATCTTGTTCTTGGCGACTGCGAAGAGTTTCGAA 200
Query 184 AACTTCCTCCGACGAAAGGTAGTAAGAAGACGAACGAAGATAGAGAAGAGCGTCGTACGC 243
||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 201 AACTTCCTCCGGCGAAAGGTAATAAGAAGACGAACGAAGAAAGAGAAGAGCGTCGTACGC 260
Query 244 TTGGTTTGGTTTTACTTAGAGGAGAAGAAGTGATTTCAATGACTGTCGAAGGTCCACCAC 303
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 261 TTGGTTTGGTTTTACTTAGAGGAGAAGAAGTGATTTCGATGACTGTCGAAGGTCCACCGC 320
Query 304 CACCGGAAGAATCTCGCGCCAAATCAGGATCTGTAACCGCCGTTGCTGGTCCCGGAATCG 363
|||| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 321 CACCTGAAGAATCTCGCGCCAAATCTGGATCTGTAACCGCTGTGGCTGGTCCCGGAATCG 380
Query 364 GTCGTGCTGCTGGACGTGGTGTACCTACTGGTCCATTGGTTCAAGCTCAGCCTGGATTAT 423
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 381 GTCGTGCTGCTGGACGTGGAGTACCTACTGGTCCATTGGTTCAAGCTCAGCCTGGTTTAT 440
Query 424 CTGGTCCTGTTCGTGGAATTGGTGGACCTGCTCCGGGAATGATGCAGCCTCAGATCTCTA 483
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 441 CTGGTCCTGTTCGTGGAATTGGTGGACCTGCTCCTGGAATGATGCAGCCTCAGATCTCTA 500
Query 484 GACCACCGCAGATTATTCGTCCGCCAGGACAAATGCCGCCACCGCCTCCGTCTGGTTTTA 543
||||||| |||||||||||||| || ||||||||||| |||| |||| | | ||||
Sbjct 501 GACCACCACAGATTATTCGTCCTCCGGGACAAATGCCACCACAGCCT-C--C---TTTTG 554
Query 544 CTGGTCAAGGAGGTCCTCCTCCACCTTATGGTATGAGACCACCGTATCCTGGTCCACCAC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CTGGTCAAGGAGGTCCTCCTCCACCTTATGGTATGAGACCACCGTATCCTGGTCCACCAC 614
Query 604 CGCCTCAATATGGTGGACA--AA-GGCCAATGATGATTCCTCCGCCTGGTGGTATGATGA 660
||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 615 CGCCTCAGTATGGTGGACAGCAAAGGCCAATGATGATTCCTCCACCTGGTGGTATGATGA 674
Query 661 GAGGACCTCCTCCACCTCATGGGATGCAAGGACCGCCTCCGCCTCGCCCTGGAATGCCTC 720
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 675 GAGGACCTCCTCCACCTCATGGTATGCAAGGACCGCCTCCTTCTCGCCCTGGAATGCCTC 734
Query 721 CACCGCCTGGTGGTGCTCCCATGTTTGCTCCGCCTCGCCCGGGCATGCCGCCTCCTCCGC 780
| || || ||||||||||| |||||||||||||||| || |||||||| ||| ||||||
Sbjct 735 C-CC-CC-GGTGGTGCTCCGATGTTTGCTCCGCCTCATCCTGGCATGCCACCTGCTCCGC 791
Query 781 CAAATCATCATAATCAGCAACATTGATTAGGAGTCACTTCATCTACTACGGAAGCCACAT 840
||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 792 CAAATCACCATAATCAGCAACATTGATTAGGAGTCACTTCATCTACAACGAAAGCAACAT 851
Query 841 CCACATGATTGAGTTACCCCCTCGGCTAGTCATAGCGTTTTTCTCCCTGGAGCTCAGAGG 900
|||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||
Sbjct 852 CCACATGATTGAGTTACCCC-TCGGCTAGTCGTAGCGTTTTTCTCCGTGAAGCTCAGAGA 910
Query 901 ATCGATGAGTTCATATTGGTG-TTTGCT-GTGGAAAAAGCAACTGATTTTAGAAATAGTG 958
|| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 911 ATTGATGAGTTCATATTGGTGATTT-CTCGTGGAAAAAGCAACTGATTTTAGAAATAGTG 969
Query 959 AACTTGTAGAAGTTACTGTCTTGCTCTATGAACTTGAGTGTATTACTTGTAATAGAGGCT 1018
||||||||| |||||| ||||||| |||||||||| |||||||||||||| |||||||
Sbjct 970 AACTTGTAGGAGTTACAACCTTGCTCCATGAACTTGAATGTATTACTTGTAAAAGAGGCT 1029
Query 1019 CTCAATGGTT--GACTGGCAATTCGGTTCTCAACAT-T-TTAGGCTATGTTG-TCGGTTA 1073
|||||||||| |||||||||||||||||||||||| | ||||||||||||| | |||||
Sbjct 1030 CTCAATGGTTTTGACTGGCAATTCGGTTCTCAACATATATTAGGCTATGTTGCT-GGTTA 1088
Query 1074 TGTACGTAACAAATAACTTAC 1094
||||||||||||||| |||||
Sbjct 1089 TGTACGTAACAAATATCTTAC 1109
> AT4G20440.1 | Symbols: smB | small nuclear ribonucleoprotein
associated protein B | chr4:11022142-11023752 REVERSE LENGTH=1611
Length=1611
Score = 582 bits (315), Expect = 2e-165
Identities = 611/746 (82%), Gaps = 51/746 (7%)
Strand=Plus/Plus
Query 28 CGGCGAAAATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGC 87
|||||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 129 CGGCGAGAATGTCGATGTCGAAGAGTTCAAAGATGCTTCAGTTCATCAACTACAGGATGC 188
Query 88 GAGTAACGATCCAAGACGGACGTCAGCTAATCGGAAAATTCATGGCGTTCGATCGTCACA 147
|||| ||||||||||||||| | ||||| | || || ||||||||||| || |||||||
Sbjct 189 GAGTGACGATCCAAGACGGAAGACAGCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACA 248
Query 148 TGAATCTCGTTCTCGGCGACTGCGAAGAGTTTCGGAAACTTCCTCCGA-CGAAAGGTAGT 206
|||| |||||||||||||| ||||| |||||||| || ||||| || | | ||||| |
Sbjct 249 TGAACCTCGTTCTCGGCGATTGCGAGGAGTTTCGTAAGCTTCCACC-AGCTAAAGG--G- 304
Query 207 AAGAAGA-CGAACGAAGATAGAGAAGAGCGTCGTACGCTTGGTTTGGTTTTACTTAGAGG 265
||||||| | |||||||| | ||||| || |||||||| ||||| || || ||||||||
Sbjct 305 AAGAAGATC-AACGAAGAGCGTGAAGATCGCCGTACGCTAGGTTTAGTGTTGCTTAGAGG 363
Query 266 AGAAGAAGTGATTTCAATGACTGTCGAAGGTCCACCACCACCGGAAGAATCTCGCGCCAA 325
|||||||| || ||||||||||||||||| ||||| || || ||||||||||| || ||
Sbjct 364 TGAAGAAGTTATCTCAATGACTGTCGAAGGACCACCTCCTCCTGAAGAATCTCGTGCTAA 423
Query 326 ATCAGGATCTGTAACCGCCGTTGCTGGTCCCGGAATCGGTCGTGCTGCTGGACGTGGTGT 385
| | || |||| | | || ||||||||||| ||||| || ||||| ||||| ||||| ||
Sbjct 424 AGCTGGCTCTGCAGCTGCTGTTGCTGGTCCAGGAATTGGCCGTGCCGCTGGGCGTGGAGT 483
Query 386 ACCTACTGGTCCATTGGTTCAAGCTCAGCCTGGATTATCTGGTCCTGTTCGTGGAATTGG 445
||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 484 TCCTACTGGTCCGTTAGTTCAAGCTCAGCCTGGTTTATCTGGTCCTGTTCGTGGTGTTGG 543
Query 446 TGGACCTGCTCCGGGAATGATGCAGCCTCAGATCTCTAGACCACC---GC----AG---- 494
||||||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct 544 TGGACCTGCTCCGGGAATGATGCAGCCTCAGATCTCTCGTCCACCACAGCTTTCAGCTCC 603
Query 495 ----ATTATTCGTCCGCCAGGACAAATGCCGCCACCGCCTCCGTCTGGTTTT-ACTGGTC 549
|||||||| || || ||||| ||| |||||||||||| | |||| | | ||||
Sbjct 604 TCCGATTATTCGACCTCCGGGACAGATGTTGCCACCGCCTCCTTTTGGTGGTCAA-GGTC 662
Query 550 A----A-GG-A-G-G-TCCTCCTCCACCTTATGGTATGAG---ACC---AC--C-GTATC 591
| || | | | |||||| || |||||||||||||| ||| || | || |
Sbjct 663 CTCCTATGGGAAGAGGTCCTCCACCGCCTTATGGTATGAGGCCACCGCCACAGCAGTTTT 722
Query 592 CTGGTCCACCACCGCCTCAATATGGTGGACAAAGGCCAATGATGATTCCTCCGCCTGGTG 651
|||| |||||||||||||| ||||| | |||||||||||||| | ||||| |||||||
Sbjct 723 CTGGACCACCACCGCCTCAGTATGG-G--CAAAGGCCAATGAT--T-CCTCCTCCTGGTG 776
Query 652 GTATGATGAGAGGACCTCCTCC---ACCTCATGGGATGCAAGGACCGCCTCCGCCTCGCC 708
|||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 777 GTATGATGAGAGGACCTCCTCCTCCACCTCATGGAATGCAAGGACCTCCTCCGCCTCGCC 836
Query 709 CTGGAATGCCTCCACCGCCTGGTGGT 734
||||||||||||| | |||||||||
Sbjct 837 CTGGAATGCCTCCTGCTCCTGGTGGT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5