BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494541
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44450.1 | Symbols: | methyltransferases | chr5:17914023-17... 1628 0.0
> AT5G44450.1 | Symbols: | methyltransferases | chr5:17914023-17916019
REVERSE LENGTH=1344
Length=1344
Score = 1628 bits (881), Expect = 0.0
Identities = 1085/1177 (92%), Gaps = 40/1177 (3%)
Strand=Plus/Plus
Query 1 AAATGTCGTTTTCTCTTCACAGCCCATTTGTTTCCATTGGTCACTTCCATTG---CCACA 57
||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1 AAATGTCGTCTTCTCTTCACAGCCCATTCGTTTCCATTGGTCACTTCCATTGCCACCACA 60
Query 58 ACCACCAAAACCATATCTCGCCGCCGTcgacgacgacgacgacgacgacACTTGCTTCAC 117
|| |||||||||||||||||||| | || | || ||||||||||||||||||||||||
Sbjct 61 ACAACCAAAACCATATCTCGCCG-C--CG-C--CGTCGACGACGACGACACTTGCTTCAC 114
Query 118 CACCGTATCTATATCAACAGA-GAAGAGAGACAAGAAGCGTTTTAACTCTCTCTTCTGAA 176
||||||||| |||||||||| ||| ||||| ||||||||| |||||||| |||||| ||
Sbjct 115 CACCGTATCGCTATCAACAGAGGAA-AGAGATAAGAAGCGTGTTAACTCTTTCTTCT-AA 172
Query 177 -TCTATGGAGATTTGTGGCGTTGATTCCGAAGGCAAAGAGTTTAACAGCGTACAAGAGAT 235
|| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 173 TTCCATGGATATTTGTGGCGTTGATTCCGAAGGGAAAGAGTTTAATAGCGTACAAGAGAT 232
Query 236 GTGGAGAGAAGAAATTGGAGAAGAAGGAGACGAAAC-AAGAAAAACCCAATGGTATAGAG 294
|||||||||||||||| | | ||||||||||||||| || ||||||||||||||||||||
Sbjct 233 GTGGAGAGAAGAAATT-G-G-AGAAGGAGACGAAACTAA-AAAAACCCAATGGTATAGAG 288
Query 295 ATGGTGTTTCTTATTGGGAAGGTGTTGAAGCATCTGTTGATGGAGTATTAGGAGGATATG 354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 289 ATGGTGTTTCTTATTGGGAAGGTGTTGAAGCTTCTGTTGATGGAGTATTAGGAGGATATG 348
Query 355 GTCATGTGAATGATGCTGATATTATAGGAAGTGAGGTTTTTCTTAAGACTCTTTTGCAAG 414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GGCATGTGAATGATGCTGATATTATAGGAAGTGAGGTTTTTCTTAAGACTCTTTTGCAAG 408
Query 415 AAAGATTAGTTAA---TGTTGGACCTAATCAACATTTAGTAGCTCTTGATTGTGGATCTG 471
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 409 AAAGATTAGTTAACAATGTTGGAGCTAATCAGCATTTAGTAGCTCTTGATTGTGGATCTG 468
Query 472 GTATTGGAAGAATCACTAAGAATCTTCTGATTCGATATTTTAACGAGGTTGATCTTCTTG 531
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 469 GTATTGGAAGAATCACTAAAAATCTTCTGATTCGATACTTTAACGAGGTTGATCTTCTTG 528
Query 532 AGCCTGTAGCGCAATTTCTTG-ATGCAGCACGTGAAAACTTGGCATCTGCGGGCTCCAAA 590
|||||||||| |||||| ||| ||||||| |||||||| ||||||||||| ||||| ||
Sbjct 529 AGCCTGTAGCACAATTT-TTGGATGCAGCTCGTGAAAATTTGGCATCTGCAGGCTCTGAA 587
Query 591 ACGCACAAAGCAACGAACtttttttGTGTTCCTCTTCAGGAGTTTACTCCAGCTGCTGGG 650
||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 588 ACGCACAAAGCTACTAACTTTTTCTGTGTACCTCTTCAGGAGTTTACTCCAGCTGCTGGG 647
Query 651 AGGTACGATGTCATATGGGTTCAATGGTGCATTGGGCATCTCACGGACAATGACTTTGTT 710
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AGGTATGATGTAATATGGGTTCAATGGTGCATTGGGCATCTCACGGACAATGACTTTGTT 707
Query 711 TCTTTCTTTAACCGCGCAAAGGGATGCCTTAAACCTGGTGGGTTTTTCGTCGTGAAGGAG 770
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 708 TCTTTCTTTAACCGCGCAAAGGGATACCTTAAACCTGGTGGGTTTTTCGTCGTGAAAGAG 767
Query 771 AATCTCGCTAAAAAAGGATTTGTTTTGGATAAAGAGGATCACAGCATCACCAGATCGGAT 830
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 768 AATCTCGCTAAAAATGGATTTGTTTTGGATAAAGAGGATCATAGCATCACCAGATCGGAT 827
Query 831 CCCTACTTCAAACAGCTCTTTCGCCAATGCGGGTTACATCTCTATAGAACAAAGGATCAG 890
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 828 CCATACTTCAAACAGCTCTTTCGCCAATGTGGGTTACATCTCTATAGAACAAAGGATCAG 887
Query 891 AAAGGTCTTCCACAAGAGTTATTTGCCGTAAAAATGTATGCATTAACGGTTGACACACCA 950
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 888 AAAGGTCTTCCACAAGAGTTATTTGCTGTAAAAATGTATGCGTTAACGGTTGACACACCA 947
Query 951 CCGAAAATCCACCGAACCAGATCAAAAACTACTA-GCAACAGACCGCAGATTATCAAATA 1009
|| ||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||
Sbjct 948 CCCAAAATCCACCGAACCAGGTCAAAAACT-CGAAGCAACAGACCGCAGATTATCAAATG 1006
Query 1010 ACAAAGCTT---A--------C---GGAGTCTTAATCTTTTTGTTTAAAGAGAGAAGCTA 1055
||||||||| | | |||||||||||| ||| || |||||||||||||||
Sbjct 1007 ACAAAGCTTCCGATTGGTTTACTACGGAGTCTTAATCGTTTGGTGTAAAGAGAGAAGCTA 1066
Query 1056 CCAAAGGTATTGTAAGATCTGGATCAAGGCTTGGCTGCTACCACTGTCACATGGTTTGGT 1115
|||||||| |||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 1067 CCAAAGGTGTTGTAAGATCTGGATCAAGGCTTGGCTGCTTC-ATTGTCACATGGTTTGGT 1125
Query 1116 TTTGTGCCTGCTCGATTCTCTTCTCTTCCATCACCTT 1152
||||||| |||||||||||| |||| |||||||||||
Sbjct 1126 TTTGTGCATGCTCGATTCTCCTCTCCTCCATCACCTT 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5