BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494545
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44410.1 | Symbols: | FAD-binding Berberine family protein ... 2386 0.0
AT5G44440.1 | Symbols: | FAD-binding Berberine family protein ... 985 0.0
AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp ... 697 0.0
> AT5G44410.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17891222-17892978 REVERSE LENGTH=1757
Length=1757
Score = 2386 bits (1292), Expect = 0.0
Identities = 1536/1656 (93%), Gaps = 8/1656 (0%)
Strand=Plus/Plus
Query 57 ACCGACTCTGCATTAACAAAATGGAGTTTTTGAGATTTTTGCTTTCTCTCTTTATAAAAG 116
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 106 ACCGTCTCTGCATTAAGAAAATGGAGATTTTGAGATTTTTGCTTTCTCTCTTTATATATT 165
Query 117 TTCTTCTGTTGAATCTTTCCCTTTCTCATTTTCCGTT-GATTTCAGGTCAAAGGACTAAC 175
||||| ||||||||||||| ||||| |||||||| || |||||||| |||||||||||||
Sbjct 166 TTCTTTTGTTGAATCTTTCTCTTTCACATTTTCC-TTCGATTTCAGCTCAAAGGACTAAC 224
Query 176 CACGAAGACTTCCTCAGGTGTCTCACTCACCGGATAAACGACCACGAATCAAGAATCATA 235
|| ||| ||||||||| ||||||| ||||||| || ||||| |||| ||||||||||||
Sbjct 225 CATGAAAACTTCCTCAAGTGTCTCTCTCACCGAATCAACGAGGACGACTCAAGAATCATA 284
Query 236 CACACATCAAAAGATCCTTCCTTTTTCTCAATCTTGAATTCTTCCATACAAAATCCAAGA 295
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 285 CACACATCAAAAGATCCTTCGTATTTCTCAATCTTGAATTCTTCCATACAAAATCCAAGA 344
Query 296 TTCTCTGTTCTTGAAACACCTAAACCGGTCTCAATCATCACTCCGGTTCAAGCCACCAAT 355
|||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 345 TTCTTTGTTCTCGAAACACCTAAACCGGTTTCAATCATCACTCCGGTTCAAGCCACCGAT 404
Query 356 GTTCAATCTACGATTAGATGCGCACGGCTTCACGGTATCCACATCAGGACTAGGAGTGGT 415
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 405 GTTCAATCTACGATTAAATGCGCACGGCTTCACGGTATACACATCAGGACTAGGAGTGGT 464
Query 416 GGTCATGACTACGAGGGCTTT-TCTTACATGGCCAAAATCAGACCGTTCGTTGTCCTTGA 474
|||||||||||||| || ||| ||||||||||| |||| |||||||||||||||| ||||
Sbjct 465 GGTCATGACTACGAAGG-TTTATCTTACATGGCTAAAAGCAGACCGTTCGTTGTCATTGA 523
Query 475 TTTGAGAAATCTCCGGTCTATAACATTAGATGTTGATAACCGGACCGGTTGGGTTCAGTC 534
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 524 TTTGAGAAATCTCCGGTCTATTACATTAGATGTTGATAACCGGACCGGTTGGGTTCAATC 583
Query 535 CGGAACTACAATTGGGGAATTGTACTATAAGATTGGGAAATTGAGCAAATCTTTAGCCTT 594
|||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||
Sbjct 584 CGGAGCTACAATTGGGGAATTGTACTATGAGATTGGAAAATTAAGCAAATCTTTGGCCTT 643
Query 595 TCCGGCCGGTCTATACCCAACGGTCGGTATCGGAGGGCAATTCGGAGGTGGAGGGTATGG 654
|||||||||||| || ||||| || || ||||||||||||||||||||||| ||||| ||
Sbjct 644 TCCGGCCGGTCTTTATCCAACCGTTGGCATCGGAGGGCAATTCGGAGGTGGTGGGTACGG 703
Query 655 AACATTGATGAGAAAATACGGTTTATCGGCGGATAATGTAATTGACGCACATATCGTTGA 714
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 704 TACGTTGATGAGAAAATACGGTTTATCGGCGGACAATGTAATTGATGCACATATTGTTGA 763
Query 715 TGCGAACGGAAGCTTTCTTGACCGACAAGGCATGGGTGAGGATTTCTTTTGGGCTATTCG 774
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 764 CGCGAATGGAAGCTTTCTTGACCGACAAGGCATGGGTGAAGATTTCTTTTGGGCTATCCG 823
Query 775 TGGAGGGGGAGGATCGAGTTTTTGTGTTGTCCTATCATGGAAGATTAGATTGCTCGATGT 834
|||||| |||||||| || || | ||||||||| |||||||||||||||||||| |||||
Sbjct 824 TGGAGGCGGAGGATCAAGCTTCTCTGTTGTCCTGTCATGGAAGATTAGATTGCTTGATGT 883
Query 835 TCCGTCGGTAGTAACGGTCTTTAACGTCGTGAAAACATCGGAAAAAGATGCTGTCTCGAT 894
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 884 TCCGTCGGTAGTAACGGTCTTTAAAGTCGTGAAAACATCGGAAAAAGAGGCTGTCTCGAT 943
Query 895 CATCAACAAGTGGCAGTATATTGCGGATAAGGTTCCAAATGATCTTTTCATCAGAGCTAT 954
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 944 CATCAACAAGTGGCAGTATATTGCGGATAAGGTTCCTAATGATCTTTTCATCAGAGCTAT 1003
Query 955 GTTGCAGAAGGAAACCGAGGTTTATGCTTCGTTTCCAGGACTTTATCTCGGTCCGGTAAG 1014
| | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1004 GCTACAGAAGGAAACCGAGGTTTATGCTTCGTTCCCGGGACTTTATCTCGGTCCGGTAAG 1063
Query 1015 CGATCTATTAGCGTTAATGAAAGATAAGTTTCCGGAATTAGGTCTTGAGATTGGAGATTG 1074
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1064 CGATCTATTAGCATTGATGAAAGATAAGTTTCCGGAATTAGGTCTTGAGATTGGAAATTG 1123
Query 1075 TAGAGAAGTGAATTGGATTGAGTCTGTTCTCTGGTTTGTTAAAGAACAATCAATGGAAAC 1134
||||||| ||| ||||||||||||||||||||||||| | |||| | ||||||||||||
Sbjct 1124 TAGAGAAATGAGTTGGATTGAGTCTGTTCTCTGGTTTATAAAAGGAGAATCAATGGAAAT 1183
Query 1135 TCTTGTGAAACG-AAAGCGAACCTCGAGATCTTTCAAGGGAAAAGATGATTTTGTCGAAG 1193
||||| |||||| ||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1184 TCTTGCGAAACGGAAA-CGAACGTCAAGATCTTTCAAGGGAAAAGATGATTTCATCGAAG 1242
Query 1194 AACCGATACCTAAACCCGCGATTCGGTATCTTTGGAAACGATTCGAGGCGCCCGAGGCTC 1253
|||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1243 AACCGATACCTAAAACCGCGATTCAGTATCTTTGGAGACGATTCGAGGCGCCCGAGGCTC 1302
Query 1254 GGCTTGCAAAGATCACACTCACTCCATTTGGTGGCAAAATGAGTGAAATAGCGGAATAT- 1312
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1303 GGCTTGCAAAGATCATACTCACTCCATTTGGTGGCAAAATGAGTGAAATTGCGGA-TAAC 1361
Query 1313 GAAACACCATTCCCACATAGAGAGGGGAATCTTTATGAGATTCAATATTTGGCTTATTGG 1372
|||| |||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1362 GAAATACCATTCCCACATAGAGAAGGTAATCTTTATGAGATTCAATATTTAGCTTATTGG 1421
Query 1373 AGTGAAGAAGAAGATAAGAACAAGACTAATACAGAGAAGTATTTGAGATGGGTGGAGAGT 1432
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1422 AGTGAAGAAGAAGATAAGAACAAGACTAATACTGAAAAGTATTTGAGATGGGTCGAGAGT 1481
Query 1433 GTATATGAATTTATGACTCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTTAACTTT 1492
||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 1482 GTATACGAATTTATGACTCCTTATGTTTCAAAATCTCCACGAAGAGCTTATGTTAATTTT 1541
Query 1493 AGAGACATTGATTTGGGAATGTATCTTGGGATGAACATGAAGACAAAGTACGAGGAAGCA 1552
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1542 AGAGACATTGATTTGGGAATGTATCTTGGGTTGAATATGAAGACAAAGTACGAGGAAGCA 1601
Query 1553 AAGATTTGGGGAGTGAAGTATTTCAAGAACAACTTCGATAGATTGGTGAGAGTGAAAACA 1612
||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1602 AAGGTTTGGGGAGTGAAGTATTTCAAGAACAATTTCGATAGATTGGTGAGAGTTAAAACA 1661
Query 1613 AATGTTGATCCAATGGATTTCTTTTGTGATGAACAGAGTATTCCAATTATGAAATCTGTT 1672
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct 1662 AATGTTGATCCAATGGATTTCTTCTGTGATGAACAAAGTATACCAATTATGAAATATGTT 1721
Query 1673 AATGATATTTGAAATTTTCAAATTTGTTTCCTTTGC 1708
||||||||||||||| |||||||||||||| ||||
Sbjct 1722 AATGATATTTGAAATAGTCAAATTTGTTTCCCTTGC 1757
Score = 56.5 bits (30), Expect = 8e-07
Identities = 54/64 (84%), Gaps = 7/64 (11%)
Strand=Plus/Plus
Query 1 CAACATAAGAAACAGACACAACATAAAAA--A-C-AAT-CTTGCC-ACTTGATATaaa-a 53
||||||||||||||||||||||||||||| | | || | | || |||||||||||| |
Sbjct 1 CAACATAAGAAACAGACACAACATAAAAAGTATCTAACACATACCCACTTGATATAAACA 60
Query 54 aaaa 57
||||
Sbjct 61 AAAA 64
> AT5G44440.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17910557-17912312 REVERSE LENGTH=1756
Length=1756
Score = 985 bits (533), Expect = 0.0
Identities = 1209/1529 (79%), Gaps = 72/1529 (5%)
Strand=Plus/Plus
Query 173 AACCACGAAGACTTCCTCAGGTGTCTCACTCACCGGATAAACGAC--CA----CGAA-TC 225
||||| |||||||| || | |||||| || |||| || |||||| || |||| |
Sbjct 96 AACCATGAAGACTTTCTTAAGTGTCTTTCTTACCGAATGAACGACAACACCGTCGAACCC 155
Query 226 AAGAATCATACACACATCAAAAGATC-CTTCCTTTTTCTCAATCTTGAATTCTTCCATAC 284
|| | |||||||||| || ||||| | |||||||||| || || ||| ||||||| ||||
Sbjct 156 AA-AGTCATACACACTTCCAAAGA-CTCTTCCTTTTTTTCCATATTGGATTCTTCGATAC 213
Query 285 AAAATCCAAGATTCTCTG-TTCTTGAAACACCTAAACCGGTCTCAATCATCACTCCGGTT 343
|||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||
Sbjct 214 AAAATCCAAGATTCTCGGTTTC-CGAAACACCTAAACCGGTCTCAATCATCACTCCCGTT 272
Query 344 CAAGCCACCAATGTTCAATCTACGATTAGATGCGCACGGCTTCACGGTATCCACATCAGG 403
|||||| | |||||| || ||| |||||||||| ||| || || || || | |||
Sbjct 273 AAAGCCAGTGACGTTCAAACTGTGATCAGATGCGCACAGCTGCATGGAATTCATGTAAGG 332
Query 404 ACTAGGAGTGGTGGTCA-TGACTACGAGGG-CTTTTCTTACATGGCCAA-AATCAGACCG 460
||| |||| | ||||| || |||||| || || | ||||||| || | || || |||
Sbjct 333 ACTCGGAGCGCCGGTCACTG-CTACGAAGGTCTCT-CTTACATTGCGTACAA-CAAACCA 389
Query 461 TTCGTTGTCCTTGATTTGAGAAATCTCCGGTCTATAACATTAGATGTTGATAACCGGACC 520
|||| |||| | ||||| || ||||| ||||||||| ||||||| ||||||||||||||
Sbjct 390 TTCGCTGTCATCGATTTAAGGAATCTTCGGTCTATATCATTAGACGTTGATAACCGGACA 449
Query 521 GGTTGGGTTCAGTCCGGAACTACAATTGGGGAATTGTACTATAAGATTGGGAAATTGAGC 580
|||||||| || ||||| | || |||||||||||| ||| ||||||||||| | |
Sbjct 450 GGTTGGGTCCAAACCGGAGCAACGGCTGGGGAATTGTATTATGAGATTGGGAAAACCACC 509
Query 581 AAATCT-TTAGCCTTTCC-GGCCGGTCTAT-ACCCAACGGTCGGTATCGGAGGGCAATTC 637
|||||| || || ||||| ||||||| | | ||||||| || ||| | || || |||||
Sbjct 510 AAATCTCTT-GC-TTTCCCGGCCGGTAT-TCACCCAACCGTTGGTGTAGGCGGACAATTT 566
Query 638 GGAGGTGGAGGGTATGGAACATTGATGAGAAAATACGGTTTATCGGCGGATAATGTAATT 697
| ||||| || ||||| |||||| | || |||||||||||| | |||||||| ||||
Sbjct 567 AGCGGTGGTGGTTATGGCACATTGCTAAGGAAATACGGTTTAGCTGCGGATAACATAATC 626
Query 698 GACGCACATATCGTTGATGCGAACGGAAGCTTTCTTGACCGACAAGGCA-TGGGTGAGGA 756
|| |||| | | ||||| |||| || || ||||||||||||||| || |||| |||||
Sbjct 627 GATGCACTTGTGGTTGACGCGAGTGGGAGGATTCTTGACCGACAAG-CAATGGGCGAGGA 685
Query 757 TTTCTTTTGGGCTATTCGTGGAGGGGGAGGATCGAGTTTTTGTGTTGTCCTATCATGGAA 816
|| |||||||||||||||||||||||| ||||| || || ||||| | ||||| |||||
Sbjct 686 TTACTTTTGGGCTATTCGTGGAGGGGGCGGATCAAGCTTCGGTGTTATACTATCGTGGAA 745
Query 817 GATTAGATT-GCTCGATGTTCCGTCGGTAGTAACGGTCTTTAACGTCGTGAAAACATCGG 875
| ||| ||| | |||||||||| || | | || || ||||| ||| ||||||||||
Sbjct 746 GGTTAAATTAG-TCGATGTTCCATCCACAATTACCGTGTTTAAAGTCCAGAAAACATCG- 803
Query 876 AA-AAAGATGCTGTCTCG-ATCATCAACAAGTGGCAGTATATTGCGGATAAGGTTCCAAA 933
|| ||||| || || | | |||||||| || ||||| ||| ||| ||||||||||| |
Sbjct 804 AAGAAAGAGGCCGT-TAGGATCATCAAGAAATGGCAATATGCTGCAGATAAGGTTCCTGA 862
Query 934 TGATCTTTTCATCAG-AGCTATGTTGCAGA-AGGAAACC-GA--G--GTTTATGCTTCGT 986
|||||||||||| || | | | ||| ||| | |||| || | || | |||| ||
Sbjct 863 TGATCTTTTCATTAGGA-CAACATTGGAGAGATCAAACAAGAACGCAGTACACGCTTTGT 921
Query 987 TTC-CAGGACTTTATCTCGGTCCGGT-AAGCGATCTATTAGCGTTAATGAAAGATAAGTT 1044
| | | ||||| ||| | |||||||| || | ||||||| ||||| ||| |||| |||||
Sbjct 922 T-CACTGGACTATATATTGGTCCGGTGAA-CAATCTATTGGCGTTGATGGAAGAAAAGTT 979
Query 1045 TCCGGAATTAGGTCTTGAGATTGGAGATTGT-A-GAGAAGTGAATTGGATTGAGTCTGTT 1102
||||||| |||||||||||| | || |||| | |||| ||| |||||||||||||||
Sbjct 980 TCCGGAACTAGGTCTTGAGAAAGAAGGTTGTGAAGAGA--TGAGTTGGATTGAGTCTGTA 1037
Query 1103 CTCTGGTTTGTTAAAGAACAATCAATGGA-AA-CTCTTG-TGAA---ACGAA-----AGC 1151
|||||||||| | | | | || ||| || |||||| || ||||| |||
Sbjct 1038 CTCTGGTTTGCTGATTTCCC-TAAA-GGAGAATCTCTTGGTGTTCTCACGAATCGTGAGC 1095
Query 1152 GAACCTCGAGATCTTTCAAGGGAAAAGATGATTTTGTCGAAGAACCGATACCTAAACCCG 1211
| || || ||||||||| || ||||||||||||||| ||||||||||||| | | |
Sbjct 1096 GTACATCTCTATCTTTCAAAGGCAAAGATGATTTTGTCCAAGAACCGATACCCGAGGCTG 1155
Query 1212 CGATTCG-GTATCTTTGGAAACGATTCGAGGCGCCCGAGGCTCGGCTTGCAAAGATCACA 1270
| |||| | | | |||| ||||| || || |||||||||||||||| |||||||| |
Sbjct 1156 CAATTCAAG-AGATATGGAGGCGATTAGAAGCCCCCGAGGCTCGGCTTGGAAAGATCATA 1214
Query 1271 CTCACTCCATTTGGTGGCAAAATGAGTGAAATAGCGGAATATGAAACACCATTCCCACAT 1330
| |||||||||||||| |||||||||||||| || || || ||||||||||||||||||
Sbjct 1215 TTAACTCCATTTGGTGGGAAAATGAGTGAAATGGCAGAGTACGAAACACCATTCCCACAT 1274
Query 1331 AGAG-AGGGGAATCTTTATGAGATTCAATATTTGGCTTATTGGAGTGAAGAAGAAGATAA 1389
||| |||| ||||| ||||||||||| ||| ||||||| ||||| ||||| ||||| ||
Sbjct 1275 CGAGGAGGG-AATCTCTATGAGATTCAGTATGTGGCTTACTGGAGAGAAGAGGAAGACAA 1333
Query 1390 GAACAAGACTAATACAGAGAAGTATTTGAGATGGGTGGAGAGTGTATATGAATTTATGAC 1449
||||||||| | ||||| || ||| ||| |||||| || || || || |||||||||||
Sbjct 1334 GAACAAGACGGAGACAGATAAATATCTGAAATGGGTCGATAGCGTTTACGAATTTATGAC 1393
Query 1450 TCCTTATGTTTCGAAATCTCCAAGAAGAGCTTATGTTAACTTT-AGAG-ACATTGATTTG 1507
||| ||||||||||||||||||||| |||||||||| || ||| | || | || ||||||
Sbjct 1394 TCCATATGTTTCGAAATCTCCAAGAGGAGCTTATGTCAA-TTTCA-AGGATATGGATTTG 1451
Query 1508 GGAATGTATCTTGGGATGAACATGAAGACAAAGTACGAGGAAGCAAAGATTTGGGGAGTG 1567
|| ||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1452 GGTATGTATCTTGGAAAGAA---GAAGACAAAGTACGAGGAAGGAAAGAGTTGGGGAGTG 1508
Query 1568 AAGTATTTCAAGAACAACTTCGATAGATTGGTGAGAGTGAAAACAAATGTTGATCCAATG 1627
||||||||||||||||| ||||| ||||||||||||||||| || | ||||||||||
Sbjct 1509 AAGTATTTCAAGAACAATTTCGAGAGATTGGTGAGAGTGAAGACTAGGGTTGATCCAACA 1568
Query 1628 GATTTCTTTTGTGATGAACAGAGTATTCC 1656
|||||||| || ||||||||||| |||||
Sbjct 1569 GATTTCTTCTGCGATGAACAGAGCATTCC 1597
> AT5G44417.1 | Symbols: | pseudogene, similar to CPRD2, blastp
match of 42% identity and 7.0e-94 P-value to GP|13161397|dbj|BAB33033.1||AB056448
CPRD2 {Vigna unguiculata} | chr5:17901832-17903346
REVERSE LENGTH=1515
Length=1515
Score = 697 bits (377), Expect = 0.0
Identities = 850/1072 (79%), Gaps = 57/1072 (5%)
Strand=Plus/Plus
Query 609 ACCCAACGGTCGGTATCGGAGGGCAATTCGGAGGTGGAGGGTATGGAACATTGATGAGAA 668
||||||| || || ||||||| || || | || ||||| || || || ||| | ||||
Sbjct 467 ACCCAACCGTTGGCGTCGGAGGCCAGTTTAGCGGCGGAGGTTACGGCACGTTGCTTAGAA 526
Query 669 AATACGGTTTATCGGCGGATAATGTAATTGACGCACATATCGTTGATGCGAAC--GGAAG 726
||||||||||| | |||||||| |||| || |||| | | ||||| || || || ||
Sbjct 527 AATACGGTTTAGCAGCGGATAACATAATCGATGCACTTGTGGTTGA--CGCACGTGGGAG 584
Query 727 CTTTCTTGACCGACAAGGC-ATGGGTGAGGATTTCTTTTGGGCTATTCGTGGAGGGGGAG 785
|||||||||||||| || ||||||||||||| ||||||||| ||||||||||| || |
Sbjct 585 GATTCTTGACCGACAA-GCAATGGGTGAGGATTACTTTTGGGCGATTCGTGGAGGCGGTG 643
Query 786 GATCGAGTTTTTGTGTTGTCCTATCATGGAAGATT-AGATT-GCTCGATGTTCCGTCGGT 843
||||||| ||| ||||||| ||||||||||||||| || || | |||||||||||||
Sbjct 644 GATCGAGCTTTGGTGTTGTACTATCATGGAAGATTAAG-TTAG-TCGATGTTCCGTCCAC 701
Query 844 AGTAACGGTCTTTAACGTCGTGAAAACATCGGAAAAAGATGCTGTCT-CGATCATCAACA 902
|| || || ||||| ||| | |||||||||| ||||| || || | |||||||||||
Sbjct 702 GGTCACCGTGTTTAAAGTCCAG-AAACATCGGAGAAAGAGGCCGT-TAGGATCATCAACA 759
Query 903 AGTGGCAGTATATTGCGGATAAGGTTCC-AAATGATCTTTTCATCAGAGCTATGTTGCAG 961
||||||||||| ||||||||||||| || || |||||||||||||| || | |||| ||
Sbjct 760 AGTGGCAGTATGTTGCGGATAAGGTCCCTGAA-GATCTTTTCATCAGCGCAACGTTGGAG 818
Query 962 A-AGGAAACCG--AGGT-T-T--ATGCTTCGTTTCCAGGACTTTATCTCGGTCCGGT-AA 1013
| | ||| || | | | | | |||| |||| | ||||| ||||| |||||||| ||
Sbjct 819 AGATCAAA-CGAAAACTCTGTGCAGGCTTTGTTTACTGGACTCTATCTTGGTCCGGTGAA 877
Query 1014 GCGATCTATTAGCGTTAATGAAAGATAAGTTTCCGGAATTAGGTCTTGAGATTGGAGATT 1073
|||| || || || ||| |||| |||||||| |||||||||||||| || ||| |
Sbjct 878 -TAATCTCTTGGCCTTGATGGAAGAAAAGTTTCCAGAATTAGGTCTTGATATCCAAGACT 936
Query 1074 G--TAGAGA--AG-TGAATTGGAT-TG-AGTCT-GTTCT-CTGGTTTGT-TAAAGAACAA 1123
| ||||| || || ||| || || | ||| ||| | ||| ||| | ||||| | |
Sbjct 937 GCACAGAGATGAGTTGGGTTGAATCTGCACTCTGGTT-TGCTGATTTCTCTAAAGGAGAG 995
Query 1124 TC-AATGGAAACTCTTGTGAAACGAAAGCG-A-ACCTCGAGATCTTTCAAGGGAAAAGAT 1180
|| ||| ||| | ||| || ||||| | | ||| | ||||||||||| |||||
Sbjct 996 TCTCTTGG-TGTTCTCGCGAATCGGAAGCGTACATCTC-TG-TCTTTCAAGGGTAAAGAC 1052
Query 1181 GATTTTGTCGAAGAACCGATACCTAAACCCGCGATTC-GGTATCTTTGGAAACGATTCGA 1239
|| |||||| ||||||||||||| | | || |||| | || |||| ||||| ||
Sbjct 1053 GACTTTGTCCAAGAACCGATACCCGAGGCTGCAATTCAAG-CGCTATGGAGGCGATTAGA 1111
Query 1240 GGCGCCCGAGGCTCGGCTTGCAAAGATCACACTCACTCCATTTGGTGGCAAAATGAGTGA 1299
|||||| |||||||||||||||||| | | | | ||||||| |||||| |||||||||||
Sbjct 1112 GGCGCCTGAGGCTCGGCTTGCAAAGGTTATATTAACTCCATATGGTGGAAAAATGAGTGA 1171
Query 1300 AATAGCGGAATATGAAACACCATTCCCACATAGAGAGGGGAATCTTTATGAGATTCAATA 1359
||| || || | ||||| ||||||||||| || | |||||||| ||||||||||| ||
Sbjct 1172 AATCGCAGAGCACGAAACGTCATTCCCACATCGAAAAGGGAATCTCTATGAGATTCAGTA 1231
Query 1360 TTTGGCTTATTGGAGTGAAGAAGAAGATAAGAACAAGACT--AATACAGAGAAGTATTTG 1417
| |||||| |||||| ||||| ||||| |||||||||| | || |||||||||||| ||
Sbjct 1232 TCTGGCTTTTTGGAGAGAAGAGGAAGACAAGAACAAGA-TGGAA-ACAGAGAAGTATCTG 1289
Query 1418 AGATGGGTGGAGAGTGTATATGAAT-TTATGACTCCTTATGTTTCGAAATCTCCAAGAAG 1476
| |||||| ||||| || || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1290 AAATGGGTTGAGAGCGTTTA-CAATCTTATGACTCCTTATGTTTCGAAATCTCCAAGAAG 1348
Query 1477 AGCTTATGTTAACTTTA-GAGA-CATTGATTTGGGAATGTATCTTGGGATGAACATGAAG 1534
||||||||| ||||| | | || | |||||||||||||||||||||| | | | | || |
Sbjct 1349 AGCTTATGTCAACTTCATG-GATC-TTGATTTGGGAATGTATCTTGGAAAGGA-A-GA-G 1403
Query 1535 ACAAAGTACGAGGAAGCAAAGATTTGGGGAGTGAAGTATTTCAAGAACAACTTCGATAGA 1594
|||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |||
Sbjct 1404 ACAAAGTACGAGGAAGGGAAGAGTTGGGGAGTGAAGTATTTCAAGAACAATTTCGAGAGA 1463
Query 1595 TTGGTGAGAGTGAAAACAAATGTTGATCCAATGGATTTCTTTTGTGATGAAC 1646
||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 1464 TTGGTGAGAGTGAAAACAAGCGTTGATCCAACAGATTTCTTCTGTGATGAAC 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5