BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494546
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44400.1 | Symbols: | FAD-binding Berberine family protein ... 2543 0.0
AT5G44380.1 | Symbols: | FAD-binding Berberine family protein ... 1131 0.0
> AT5G44400.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17886194-17888480 REVERSE LENGTH=1930
Length=1930
Score = 2543 bits (1377), Expect = 0.0
Identities = 1593/1695 (94%), Gaps = 24/1695 (1%)
Strand=Plus/Plus
Query 1 AATGGGATTTTCAAAACCACTCCCTCTATTTTCATTTCTTTCGATTTTGGTGCTCTATTT 60
||||||| |||||||||||||||||| | | | |||||||||| || ||||||||
Sbjct 145 AATGGGAATTTCAAAACCACTCCCTC-----T-A--T-TTTCGATTTTAGTCCTCTATTT 195
Query 61 TTCATTCTACACCATAACACCAACTTCTTCATTAGCCTCCCTACAGGATCAATTTATCAA 120
|||| |||||||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 196 TTCACTCTACACCATTACACCAACTTCTTCATTAGCCTCCCTCCAAGATCAATTCATCAA 255
Query 121 CTGTGTCCAAAGAAACACACATGTTTACTTCCCACTTGAGAAAACATTCTTTGCTCCTAC 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 256 CTGTGTCCAAAGAAACACACATGTTTACTTCCCACTTGAGAAAACGTTCTTTGCTCCTAC 315
Query 181 GAAAAATGTCTCTATGTTCACCCAAGTTCTTGAATCGACGGCTCAGAATCTCCGGTTCTT 240
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 316 AAAAAATGTCTCTATGTTCAGCCAAGTTCTTGAATCGACGGCTCAAAATCTCCGGTTCTT 375
Query 241 GAAACAATCCATGCCTAAACCGGGATTCATATTCAGCCCGATTCATGAGTCTCACGTACA 300
|||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 376 GAAAAAATCCATGCCTAAACCGGGATTCATATTCAGCCCTATTCACGAGTCTCACGTACA 435
Query 301 AGCTTCCATTATCTGTTCCAAGAAACTCCGAATGCATCTACGTGTCAGAAGCGGCGGTCA 360
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 436 AGCTTCCATCATTTGTTCCAAGAAACTCCGAATGCATCTCCGTGTCAGAAGCGGCGGTCA 495
Query 361 CGACTACGAAGGCTTGTCTTATGTCTCTCAAATCGATAAACCGTTTATATTGATGGATCT 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 496 CGACTACGAAGGCTTGTCTTATGTCTCTCAGATCGATAAACCGTTTATATTGATGGATCT 555
Query 421 GTCAAAGATGAGACAAGTCAACATTAATATTCAAGACAACAGTGCTTGGGTTCAATCTGG 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GTCAAAGATGAGACAGGTCAACATTAATATTCAAGACAACAGTGCTTGGGTTCAATCTGG 615
Query 481 TGCTACAGTTGGTGAACTTTATTACAGGATTGCAGAGAAGAGCAAAGTCCATGGGTTCCC 540
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 616 TGCCACTGTTGGTGAACTTTATTACAGGATTGCGGAGAAGAGCAAAGTCCATGGGTTCCC 675
Query 541 GGCGGGGTTGTGCTCGAGCTTAGGCATAGGAGGGCACATAACAGGCGGTGCATACGGTTC 600
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 676 GGCGGGTTTGTGCTCGAGCTTAGGCATAGGAGGACACATAACAGGCGGTGCGTACGGTTC 735
Query 601 CATGATGAGAAAATACGGTCTCGGTGCAGACAATGTTCTAGACGCAAAAATTGTTGATGC 660
||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 736 CATGATGCGGAAATATGGTCTAGGTGCAGACAATGTTCTAGACGCAAAGATTGTTGATGC 795
Query 661 CAATGGTAGATTACTCGACAGGGCCGCGATGGGTGAGGATACATTTTGGGCGATTAGAGG 720
||| |||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 796 CAACGGTAAATTACTCGATAGAGCCGCGATGGGTGAGGATACATTTTGGGCTATTAGAGG 855
Query 721 AGGCGCTGGAGGGAGTTTTGGAATAATTCTAGCATGGAAGATCAAGCTTGTTCCTGTTCC 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 856 AGGCGCTGGAGGGAGTTTTGGGATAATTCTAGCATGGAAGATCAAGCTTGTTCCTGTTCC 915
Query 781 TCAGACCGTGACCGTCTTCACCGTCACCAAAACGTTACATCAAGACGTTGGCAACAAGAT 840
| |||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||
Sbjct 916 TAAGACCGTGACCGTCTTTACCGTCACCAAAACGTTACAACAAGACGTGGGTAACAAGAT 975
Query 841 TATCTCAAAGTGGCAAAGAGTTGCGGACAAGCTTGTTGAAGAGCTATTTATCAGAGTGCT 900
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 976 TATCTCAAAGTGGCAAAGAGTTGCGGACAAGCTTGTTGAAGAGCTATTCATCAGAGTGCT 1035
Query 901 CTTCAACGTAGCTGGAAACGGTGGGAACAAGACTGTGACAACATCGTACAACGCTCTGTT 960
||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1036 CTTCAACGTAGCTGGAACCGGTGGGAACAAGACTGTGACGACGTCGTACAATGCTCTGTT 1095
Query 961 TCTTGGCGGGAAAGGCACATTGATGAAAGTTATGAAGAAGAGTTTCCCCGAGCTAGGGCT 1020
||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1096 TCTTGGCGGGAAAGGAACGCTGATGAACGTTATGAAGAAGAGTTTCCCCGAGCTAGGGCT 1155
Query 1021 AACACTTAAAGATTGTATCGAAATGAGCTGGCTTGAATCCATTTCTTACATTTCTGGATT 1080
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1156 AACATTTAAAGATTGTATCGAAATGAGCTGGCTTGAATCCATTGCTTACATTTCTGGATT 1215
Query 1081 CCCCAGCCACACTCCTACTAGTGTTTTGCTTCAGGGGAAGTCGCCTTTCCCAAAGATCAG 1140
||| | |||||| ||||||| |||||||||||| |||||||| || ||||||||| ||||
Sbjct 1216 CCCGACCCACACGCCTACTAATGTTTTGCTTCAAGGGAAGTCTCCGTTCCCAAAGGTCAG 1275
Query 1141 CTTCAAAGCCAAATCGGATTTCGTGAAAACCCCGATTCCCGAATCCGGGCTTCAAGGGAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CTTCAAAGCCAAATCGGATTTCGTGAAAACCCCGATTCCCGAATCCGGGCTTCAAGGGAT 1335
Query 1201 CTTCAAGAAGCTACTTAAAGAAGATATTCCATTGATGATATGGAATCCTTACGGAGGAAT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CTTCAAGAAGCTACTTAAAGAAGATATTCCATTGATGATATGGAATCCTTACGGAGGAAT 1395
Query 1261 GATGGCGAAAATCCCCGAATCACAAATCCCTTTTCCGCATAGAAAAGGAGTCCTCTTCAA 1320
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1396 GATGGCGAAAATCCCCGAATCCCAAATCCCTTTTCCGCATCGAAAAGGAGTCCTCTTCAA 1455
Query 1321 AGTTCAGTACGTAACAAGTTGGCTAGACAGCGACAAGAGACCGAGCAGACACATCAACTG 1380
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1456 GGTTCAGTACGTAACAAGTTGGCTAGACAGTGACAAGAGACCGAGCAGACACATCAACTG 1515
Query 1381 GATCAGAGATCTCTACAATTACATGACGCCTTATGTCTCAAGTAATCCACGAGAAGCTTA 1440
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1516 GATCAGAGATCTCTATAGTTACATGACGCCTTATGTCTCAAGTAACCCACGAGAAGCTTA 1575
Query 1441 TGTGAACTACCGCGATCTAGACCTCGGAAAGAACACAAAAGACGTGAAAACATGCATCAA 1500
||||||||||| ||| ||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 1576 CGTGAACTACCGTGATTTAGACCTGGGAAGGAACACGAAAGACGTGAAAACATGCATCAA 1635
Query 1501 ACAAGCTCAAGTCTGGGGAGCTAACTACTTCAAAAACAATTTCAACAGATTGATGAAGAT 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1636 ACAAGCTCAAGTCTGGGGAGCTAACTACTTCAAAAACAATTTCAACAGATTGATGATGAT 1695
Query 1561 TAAATCAAAGGTTGATCCAGAGAACTTCTTCAGACACGAGCAGAGCATTCCACCTATGAT 1620
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1696 TAAAGCAAAGGTTGATCCAGAGAACTTCTTTAGACACGAGCAGAGCATTCCACCTATGAT 1755
Query 1621 GTAACGA----AAT-AAAT-----TA-----GAAGAAAATCAGATAATGGTTCTTCTGTA 1665
||||||| ||| |||| || |||||||||||||||||||||||||||||
Sbjct 1756 GTAACGAGGTCAATCAAATAAGAATAAATTAGAAGAAAATCAGATAATGGTTCTTCTGTA 1815
Query 1666 TTTCGGAAATATGTT 1680
||||||||| |||||
Sbjct 1816 TTTCGGAAAAATGTT 1830
> AT5G44380.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17878722-17881440 REVERSE LENGTH=1848
Length=1848
Score = 1131 bits (612), Expect = 0.0
Identities = 1328/1663 (80%), Gaps = 92/1663 (6%)
Strand=Plus/Plus
Query 2 ATGGGATTTTCAAAACCACTCCCT-CTATTTTCATT-TCTT-TCGATTTTGGTGC-TCTA 57
|||||| |||||||||||||||| | | |||| || | || | | ||| || | | ||
Sbjct 72 ATGGGAAATTCAAAACCACTCCCTAC-AATTTC-TTGTATTATAG-TTTCAGT-CTTGTA 127
Query 58 TTTTTCATTCTACACCATAACACCAACTTCTTCATTAGCCTCCCTACAGGATCAATTTAT 117
|||||||||||| |||||||||||||||||||| ||||||| | || |||||||| ||
Sbjct 128 TTTTTCATTCTATTGCATAACACCAACTTCTTCATCAGCCTCCATCCAAGATCAATTCAT 187
Query 118 CAACTGTGTCCAAAGAAACACACATGTTTAC-TTCCCACTTGAGAAAACATTCTTTGCTC 176
||||||||| |||||||||||||||||| | || ||||| |||||||| || || | |
Sbjct 188 AAACTGTGTCAAAAGAAACACACATGTTT-CTTTTCCACTCGAGAAAACGTTATTCACCC 246
Query 177 CTACGAAAAATGTCTCTATGTTCACCCAAGTTCTTGAATCGACGGCTCAGAATCTCCGGT 236
|| ||||||| |||||| |||||| |||||| ||||||||||||||||| ||||||| ||
Sbjct 247 CTGCGAAAAACGTCTCTTTGTTCAACCAAGTCCTTGAATCGACGGCTCAAAATCTCCAGT 306
Query 237 TCTT-GAAACAATCCATGCCTAAACCGGGATTCATATTCAGCCCGATTCATGAGTCTCAC 295
|||| | || ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 307 TCTTGGCAA-AATCCATGCCTAAACCGGGATTCATATTCAGACCGATTCACCAGTCTCAA 365
Query 296 GTACAAGCTTCCATTATCTGTTCCAAGAAACTCCGAATGCATCTACGTGTCAGAAGCGGC 355
|| ||||||||||| || ||||| ||||||||| |||| ||| | ||||| ||||| |||
Sbjct 366 GTCCAAGCTTCCATCATTTGTTCAAAGAAACTCGGAATTCATTTTCGTGTTAGAAGTGGC 425
Query 356 GGTCACGACTACGAAGG-CTTGTCTTATGTCTCTCAAATCGATAAACCGTTTATATTGA- 413
|||||||| | || ||| |||||||||||| || | || || |||||||||||||| |
Sbjct 426 GGTCACGATTTCG-AGGCCTTGTCTTATGTTTCACGGATTGAAAAACCGTTTATATT-AC 483
Query 414 TGGATCTGTCAAAGA-TGAGACAAGTCAACATTAATATTCAAGACAACAGTGCTTGGGTT 472
| || |||||||| | ||| |||| |||| || ||||| || ||| ||||||||||||
Sbjct 484 TCGACCTGTCAAA-ATTGAAACAAATCAATGTTGATATTGAATCCAATAGTGCTTGGGTT 542
Query 473 CAATCTGGTGCTACAG-TTGGTGAACTTTATTACAGGATTGCAGAGAAGAGCAAAG-TCC 530
||| |||||||||| | ||||||| ||||| ||||| ||||||||||||||| ||| |||
Sbjct 543 CAACCTGGTGCTAC-GCTTGGTGAGCTTTACTACAGAATTGCAGAGAAGAGC-AAGATCC 600
Query 531 ATGG-GTTCCCGGCGGGGTTGTGCTCGAGCT-TAGGCATAGGAGGGCACATAACAGGCGG 588
|||| ||||| ||||| |||||| | || | |||||||||| ||| | || ||||||||
Sbjct 601 ATGGATTTCCC-GCGGGTTTGTGCACAAG-TGTAGGCATAGGTGGGTATATGACAGGCGG 658
Query 589 TGCATACGGTTCCATGATGAGAAAATACGGTC-T-CGGTGCAGACAATGTTCTAGACGCA 646
|| ||||||| || ||||||| || || |||| | ||| | ||| ||||||||||||| |
Sbjct 659 TGGATACGGTACCTTGATGAGGAAGTATGGTCTTGCGG-G-AGATAATGTTCTAGACGTA 716
Query 647 AAAATTGTTGATGCCAATGGTAGATTACTCGACAGGGCCGCGATGGGTGAGGATAC-ATT 705
|| || |||||||| ||||||| |||||||||||| ||||||||||||||||| | |||
Sbjct 717 AAGATGGTTGATGCAAATGGTAAATTACTCGACAGAGCCGCGATGGGTGAGGA-CCTATT 775
Query 706 TTGGGCGATTAGAGGAGGCGCTGGAGGGAGTTTTGGAATAATTCTAGCATGGAAGATCAA 765
|||||||||||||||||||| ||||| |||||| || ||| |||||||||||||||||||
Sbjct 776 TTGGGCGATTAGAGGAGGCGGTGGAGCGAGTTTCGGGATAGTTCTAGCATGGAAGATCAA 835
Query 766 GCTTGTTCCTGTTCCTCAGACCGTGACCGTCTTCACCGTCACCAAAACGTTACATCAAGA 825
|||||||||||||||| |||| || ||||||||||| ||||||||||||||| | |||||
Sbjct 836 GCTTGTTCCTGTTCCTAAGACTGTTACCGTCTTCACTGTCACCAAAACGTTAGAACAAGA 895
Query 826 CGTTGGCAAC-AAGATTATCTCAAAGTGGCAA-AGAGTTGCGGACAAGCTTGTTGAAGAG 883
|| | | |||| ||| || ||||||||| | | || | |||| || ||||||||
Sbjct 896 CGCAAG-ATTGAAGACTATTTCTAAGTGGCAACAAATTT-CATCCAAGATTATTGAAGAG 953
Query 884 CTATTTATCAGAGTGCT-CTTCA-ACGTAGCTGGAAACGGTGGGAACAAGACTGTGACAA 941
|| ||| ||||| | || || | | ||||||||| | ||| ||||||||||||||||
Sbjct 954 ATACACATCCGAGTGGTACT-CAGA-GCAGCTGGAAATGATGGAAACAAGACTGTGACAA 1011
Query 942 C-ATCGTACA-ACGCTCTGTTTCTTGGCGGGAAAGGCACATTGATGAAAGTTATGAAGAA 999
| | ||| | | || ||||||||||| ||||||||| ||| |||| |||||| ||||
Sbjct 1012 TGACC-TACCTAGG-TCAGTTTCTTGGCGAGAAAGGCACCTTGCTGAAGGTTATGGAGAA 1069
Query 1000 GAG-TTTCCCCGAGCTAGGGCTAACACTTAAAG-ATTGTA-TCGAAATGAGCTGGCTTGA 1056
| | ||| || || |||||| |||| | |||| |||||| | |||||||||||| ||||
Sbjct 1070 G-GCTTTTCCAGAACTAGGGTTAACTCA-AAAGGATTGTACT-GAAATGAGCTGGATTGA 1126
Query 1057 ATCCAT--TTCTTACATTTCTGGATTCCC--CAGCCACACTCCTACT-AGTGTTTTGCTT 1111
| || || || ||| |||||| || ||| | ||||| | | ||||||||
Sbjct 1127 AGCCGCCCTT-TTCCATGG-TGGATTTCCAACAGGTTC--TCCTATTGAAA-TTTTGCTT 1181
Query 1112 CAGGGGAAGTCGCCTTTCCCAAA-GATCAGCTTCAAAGCCAAA-TCGGATTTCGTGAAA- 1168
||| ||||||||| | ||| ||| | ||||||||| || ||||||||||| |||
Sbjct 1182 CAGCTCAAGTCGCCTCTAGGAAAAGATTA-CTTCAAAGC-AACGTCGGATTTCGTTAAAG 1239
Query 1169 ACCCCGATTCCCGA-ATCCGGGCTTCAAGGGA-TCTTCAAGAAGCT--ACTTAAAG-AAG 1223
| || ||||| | || ||||| ||| ||| | ||||| ||| | | || ||| ||
Sbjct 1240 AACCT-ATTCCTGTGATA-GGGCT-CAAAGGAATATTCAA-AAGATTGA-TTGAAGGAA- 1293
Query 1224 ATATTCCATTGATGATA-TGGAATCCTTACGGAGGAATGATGGCGAAAATCCCCGAATCA 1282
| | |||| ||| | |||| ||||||||| || |||||| |||||||||| |||||
Sbjct 1294 ACACAACATTTCTGA-ACTGGACTCCTTACGGTGGTATGATGTCGAAAATCCCTGAATCT 1352
Query 1283 -CAAATCCCTTTTCCGCATAGAAAAGGAGTCCTCTTCAA-AGT-TC-AGTACGT-AACAA 1337
| | |||| |||||||||||||| ||| ||||||||| | | || | |||| |||
Sbjct 1353 GCGA-TCCCATTTCCGCATAGAAACGGAACCCTCTTCAAGATTCTCTATTACGCGAAC-- 1409
Query 1338 GTTGGCTAGACAGCGACAAGAGACCGAGCAGACACATCAACTGGATCAGAGATCTCTACA 1397
| ||||||| | ||||||| | |||| ||| | ||||||||||||| ||| | ||||
Sbjct 1410 -T-GGCTAGAGAATGACAAGACATCGAGTAGAAAAATCAACTGGATCAAAGAGATATACA 1467
Query 1398 ATTACATGACGCCTTATGTCTCAAGTAATCCACGAGAAGCTTATGTGAACTACCGCGATC 1457
|||||||| |||||||||||||||| |||||| || |||| |||||||||||| | ||||
Sbjct 1468 ATTACATGGCGCCTTATGTCTCAAGCAATCCAAGACAAGCATATGTGAACTACAGAGATC 1527
Query 1458 TAGACCTCGGAAAGAACACAAAAGA-CGTGAAAACATG-CATCAAACAAGCTCAAGTCTG 1515
||||| ||||| |||||| | || | || ||| | | ||| ||||| || ||||
Sbjct 1528 TAGACTTCGGACAGAACA-AGAACAACGC-AAAGGTTAACTTCATTGAAGCTAAAATCTG 1585
Query 1516 GGGAGCTAACTACTTCAAAAACAATTTCAACAGATTGATGAAGATTAAATCAAAGGTTGA 1575
|||| |||| ||||||||| |||||| |||||||| ||||||||||| | ||||||||
Sbjct 1586 GGGACCTAAGTACTTCAAAGGCAATTTTGACAGATTGGTGAAGATTAAAACCAAGGTTGA 1645
Query 1576 TCCAGAGAACTTCTTCAGACACGAGCAGAGCATTCCACCTATG 1618
|||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1646 TCCAGAGAACTTCTTCAGGCACGAGCAGAGTATCCCACCTATG 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5