BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494550
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44360.1 | Symbols: | FAD-binding Berberine family protein ... 2390 0.0
> AT5G44360.1 | Symbols: | FAD-binding Berberine family protein
| chr5:17871924-17873698 REVERSE LENGTH=1775
Length=1775
Score = 2390 bits (1294), Expect = 0.0
Identities = 1501/1602 (94%), Gaps = 9/1602 (1%)
Strand=Plus/Plus
Query 1 ATGAGAACACTTGAAGCTTTTGCTCTGTCTCTGTTTCTTGTCTTCTTAGTAAAATGGGTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAACACTTGAAGCTTTTGCTCTGTCCCTGTTTCTTGTCTTCTTAGTAAAATGGGTC 60
Query 61 AATTCTGATTCTAATTC-TCTTCCTAGTAGAGACCAATTTCTGAGTTGCATGTCGACACA 119
|||||||| |||| ||| || |||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 AATTCTGACTCTAGTTCTTC-TCCTAGTAAAGATCAATTTCTGAGTTGCATGTCGACACA 119
Query 120 TTCTGATTCAAGCTTCATAAACCCTAAAAGCTTCATCCACAAGCCAGATTCAAGACTTTA 179
||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 120 TTCTGATTCCAGCTTCATAAACCCTAAAAGCTTCATCCACAAACCAGATTCAAGAGTCTA 179
Query 180 CACCAATTTCTCGCAGTC-TT--TATCACAAAACTACAGATTCCTGACCTTGAATTTCAC 236
|||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 180 CACCGATTTCTCGCAGTCTTTAATATCACAAAACTACAGATTTCTGACCTTGAATTTCAC 239
Query 237 AAGCCAAAAGCCGATTCTGATTGTTACACCAAGAACTGATTCTGAAATCCAGAGATCATT 296
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 240 AAGCCAGAAGCCGATTCTGATCGTTACACCAAGAACTGATACTGAAATCCAGAGATCATT 299
Query 297 ACTATGCAGTAGGAAACTTGGGGTGCAAGTAAGGACTAAAAGTGGTGGCCATGACTATGA 356
||| || || ||||||||||||||| ||||||| || ||||| ||||| |||||||||||
Sbjct 300 ACTCTGTAGCAGGAAACTTGGGGTGAAAGTAAGAACCAAAAGCGGTGGTCATGACTATGA 359
Query 357 AGGCCTTTCTTACCTCTCATTACACTCGCCTTTCATCATCCTCGATCTTGTTAATATTCG 416
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct 360 AGGCCTTTCTTATCTCTCATTACACTCGCCTTTCATCATACTCGATCTCGTTAATGTTCG 419
Query 417 ATCGATCGAGATCAACCTCGCAGATGAAACAGCTTGGGTTGGAGCCGGTGCGACGATCGG 476
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 420 ATCGATCGAGATCAACCTGGCAGATGAAACAGCTTGGGTTGGAGCCGGTGCCACTATCGG 479
Query 477 TGAGCTTTACTATAACATTGCTAAATCGAGTAAAATCCATGGCTTCCCTGCAGGAACATG 536
||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 480 TGAGCTTTACTATAAAATTGCCAAATCAAGTAAGATCCATGGCTTCCCTGCAGGAACATG 539
Query 537 TCCTAGTGTTGGAGTTGGAGGTCATTTTAGTGGAGGAGGGTTTGGTGCAATGATGAGGAA 596
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 CCCTAGTGTTGGAGTTGGAGGTCATTTTAGCGGAGGAGGGTTTGGTGCAATGATGAGGAA 599
Query 597 ACATGGTTTAGCCGCAGATAATGTTGTGGATGCGCGTTTTGTAGACGCAAATGGGAGGAT 656
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 600 ACATGGTTTAGCTGCAGATAACGTTGTGGACGCGCGTTTTGTAGACGCAAATGGGAGGAT 659
Query 657 CTACAACAGTAGGAGAGAAATGGGAGAAGATTTGTTCTGGGCGATTAGAGGAGGTGGAGC 716
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CTACAACAGTAGGAGAGAAATGGGAGAAGATTTGTTCTGGGCCATTAGAGGAGGTGGAGC 719
Query 717 TGCTAGTTTTGGGGTTGTAGTATCATGGAAAGTGAAGCTAGTTAGGGTTCCAGAGAAGGT 776
||||| ||||| |||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 720 AGCTAGCTTTGGTGTTGTACTTTCATGGAAAGTGAAGCTAGTTAGGGTTCCAGAAAAGGT 779
Query 777 TACGTGCTTCAGAAGGAACCTACCGTGGACACAGAACATGACGAAAATTGTTCATAGATG 836
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 TACGTGCTTCAGAAGGAACCTACCGTTGACACAGAACATGACGAAAATTGTTCATAGATG 839
Query 837 GCAGCAAATTGCAGCAGAGCTTGAAGATAATCTCTTTATCCGAGTCATTGTTTCCAATTC 896
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||
Sbjct 840 GCAGCAAATTGCAGCAGAGCTTGACGATAATCTCTTCATCCGAGTCATCGTTTCCATTTC 899
Query 897 TGGAGGATCTGTTCAAGCTACCTTCCAAGCAAATTATCTTGGAGGAATCGATAAACTAAT 956
|||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGGAGGATCAGTTCAAACTACATTCCAAGCAAATTATCTTGGAGGAATCGATAAACTAAT 959
Query 957 ACCTCTAATGAATCAGAAGTTTCCGGAATTAGGGTTAAGGTTTCAAGACTGTACTGAAAT 1016
||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 960 TCCTCTGATGAATCAGAAGTTTCCGGAATTAGGGTTAACGTTTCAAGACTGTTCGGAAAT 1019
Query 1017 GACCTGGATCGATTCGATAATGTACTTCAACTGGAAGAAAGGACAACCACTAGAGACTCT 1076
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GACCTGGATCGATTCAATAATGTACTTCAACTGGAAGAAAGGACAACCACTAGAGACTCT 1079
Query 1077 TCTTGATCGAGAACAAAGATACAATGATCTGTATTTCAAAGCAAAATCAGATTTTGTCAA 1136
||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1080 TCTGGATCGAGGACAAAGATACAATGATCTGTATTTCAAAGCCAAATCTGATTTTGTCAA 1139
Query 1137 GAACCCAATTCCTGAAATCGGCCTAGAAGGTATATGGAAGAGGTTTCACGAGGTCGAATC 1196
|||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1140 GAACCCTATTCCTGAAATCGGTCTAGAAGGTATATGGACGAGGTTTCACGAGGTCGAATC 1199
Query 1197 TCCGATAATGATAATGGAGCCATTAGGTGGTAAAATGTATGAGATTGGTGAATCGGAGAC 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1200 TCCGATAATGATAATGGAGCCATTAGGTGGTAAAATGTATGAGATTGGTGAAACAGAGAC 1259
Query 1257 TCCATTTCCTCATAGAAGAGGGAATCTATATAATATACAGTATATGGTGAAATGGAGAGT 1316
|||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 1260 TCCATTCCCACATAGAAGAGGGAATCTATATAATATCCAGTATATGGTTAAATGGAGATT 1319
Query 1317 GAAGGAAATTGGAGAGATGGAGAAACATGTGAGATGGATGAGATTGCTTTATAGGTATAT 1376
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 GAAGGACATTGGAGTGATGGAGAAACATGTGACATGGATGAGATTGCTTTATAGGTATAT 1379
Query 1377 GAGAGTTTATGTCTCTGGATCACCAAGAGGAGCTTATTTGAATTATAGAGATCTTGATTT 1436
||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1380 GAGAGTTTATGTCTCTGCATCGCCAAGAGGAGCTTATTTGAATTACCGAGATCTTGATTT 1439
Query 1437 AGGTATGAATAAAGGGAGT-AATATGAGCTTCGCAGATGC-AAGATTATGGGGGTTTAGG 1494
||||||||| | ||| ||| |||| |||||| | |||||| || ||||||||||||||||
Sbjct 1440 AGGTATGAACAGAGG-AGTTAATACGAGCTTTGAAGATGCGAA-ATTATGGGGGTTTAGG 1497
Query 1495 TATTTTGGAAGTAATTTCAAGAGATTGGCTATGGTTAAAGGGAAGATTGATCCAACTAAT 1554
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1498 TATTTTGGAAGTAATTTCAAGAGATTGGCTATTGTTAAAGGGAAGATTGATCCAACCAAT 1557
Query 1555 TTCTTTAGGAATGAACAGAGTGTTCCTCCTTTGATGGTGTAA 1596
||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 1558 TTCTTCAGGAATGAACAAAGTGTTCCTCCTTTGATTGTCTAA 1599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5