BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494551
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44350.1 | Symbols: | ethylene-responsive nuclear protein -... 1447 0.0
> AT5G44350.1 | Symbols: | ethylene-responsive nuclear protein
-related | chr5:17864520-17865707 FORWARD LENGTH=1188
Length=1188
Score = 1447 bits (783), Expect = 0.0
Identities = 1082/1218 (89%), Gaps = 54/1218 (4%)
Strand=Plus/Plus
Query 1 AGAAACTTCATCAATCTCTCTTCTAACAAAAACCCTAACCCTAATTCTCTCAAGACAACT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAACTTCATCAATCTCTCTTCCAACAAAAACCCTAACCCTAATTCTCTCAAGACAACT 60
Query 61 CAAAGGTCTCTCATTTTTTGGGTTT-T-ATCTCTTCCGTACAATCGCCATGTCT-CT--A 115
|||||||||||| |||||| ||||| | ||| |||||||| ||||||||||||| || |
Sbjct 61 CAAAGGTCTCTCCTTTTTTAGGTTTATTATCACTTCCGTATAATCGCCATGTCTTCTCTA 120
Query 116 CCATGGAAAAAACCTAAATCAAGTCGAATCTTAAGATTCATGTCGGAGTTTCAACAATCT 175
|||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 121 CCATGGAAAAAACCAAAATCGAGTCGAATCTTAAGATTCATTTCTGAGTTTCAACAATCA 180
Query 176 CCGTTCGTTGAAACTGGCTTCCCAACTTCTTTAATCGATCTCTTCTTCAAAAATCGCGAT 235
|||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||
Sbjct 181 CCGTTCGTTGAAACTGGCTTTCCAACTTCTCTGATCGATCTCTTCTTCAAGAATCGCGAT 240
Query 236 CGTCTCAAAAAATCTCCGTCTAAACGCTTCAAACGAATCGAACGCCAGATTCAAACCGCT 295
||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||
Sbjct 241 CGTCTAAAAAAATCTCCATCTAAACGCTTCCAACGAATCGAACGCCAGATTCGAACCGCT 300
Query 296 CCAAACGCTTCTTCTTTGACTAATCAAGATGCGGTTTTGGAAAAGCCCACGGGGATTAAA 355
|||||||||||||| |||| |||||||||| || |||| ||||||||| || ||||||||
Sbjct 301 CCAAACGCTTCTTCGTTGAGTAATCAAGATACGATTTTTGAAAAGCCCTCGAGGATTAAA 360
Query 356 ACCGTTCGGAGTAAGATCGAGAAAGTTAATTGCGTTAAAGGTAAATCAGCGGCGGAGAAG 415
|||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 ACCGTTCGAAGTAAGGTCGAGAAAGTTAATTGCGTTAAAGGTAAATCAGCGGCGTTGAAG 420
Query 416 AAGCACGCGATTAAAAATAGCGTTTGCGTTTGTGGCGGTGGCGGCGAGGTCGTTTTGATG 475
||| ||||||||||||||||||||| || | |||| |||| |||||||||||||||
Sbjct 421 AAGAACGCGATTAAAAATAGCGTTTTCG---G---CGGTAGCGGTGAGGTCGTTTTGATG 474
Query 476 GCGTTTAAGGTTTTAATAGTGGCGTTGCTTGCCTTGAGCACGAAGAAGAAGCTTACTATA 535
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||| ||
Sbjct 475 GCGTTTAAGGTTTTGATAGTAGCGTTGCTCGCCTTGAGCACGAAGAAGAAGCTCACTTTA 534
Query 536 GGAATCACTCTCTCCGCCTTCGCTCTTCTCTTAACAGAGCTCGTGGCGGCGCGTGTGTTC 595
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 535 GGAATCACTCTCTCTGCCTTCGCTCTTCTCTTAACAGAGCTCGTGGCGGCGCGTGTTTTC 594
Query 596 ACGCGCTCTAAGCTCTTTAACACCGGCAAAGACAAAAACGCGATTTCCCGCGAAAAAATA 655
||||||||||| | ||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 595 ACGCGCTCTAA--T----AACACCGACAAAGACAAAAACGCGATTGCCCGCGAGAAAAT- 647
Query 656 ATCGAAACTTTTGATGAAACTCGAGTTCCT---G--ATG---TG-C---AGGAAACAGAG 703
||||||||||||||||||||||||||| | || || | |||||||||||
Sbjct 648 --CGAAACTTTTGATGAAACTCGAGTTCCCAAAGCGATTCCATGTCCTGAGGAAACAGAG 705
Query 704 CATGTAGTAGCTGAAACAGAGGTTTCGAAGTTGAAAGGTTTAACGATTCGTGATCTGTTG 763
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 706 CATGTAGTATCTGAAACAGAGGTTTCGAAGTTGAAAGGTTTAACGATACGTGATCTGTTG 765
Query 764 TTAAAGGACGAGAAATCAACAAGTAAAAGTTGGAGACTAAAATCGAAGATTGTGAAGAAG 823
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TCAAAGGACGAGAAATCAACAAGTAAAAGTTGGAGACTAAAATCGAAGATTGTGAAGAAG 825
Query 824 TTAAGGAGTTACAATAATAAGAAGACGAAGAAGACAATGATGATCAAAGAAGAGTCTTTG 883
|| |||||||||||||| ||| || |||||||| |||| |||||||||||||||||||
Sbjct 826 TTGAGGAGTTACAATAAGAAG--GAT-AAGAAGACGATGAAGATCAAAGAAGAGTCTTTG 882
Query 884 ATTGAAGTCTCGAGTTTGGTTTTAGAAGATAAACCAAATAAAGTTGACTCCGAGAGAGAC 943
|||||||||||||||||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct 883 ATTGAAGTCTCGAGTTTGGTTTTAGAAGATAAACCAAAGAAAATTGAGTCTGAGAGAGAC 942
Query 944 CAAGAA-A--CGTTAAATCCTCCATTGAT-GAGAACAAATGGTGATAAAATGAATGTGAT 999
||||| | |||| ||||||||| || | | || |||| ||| | || | |||
Sbjct 943 GAAGAAGAAACGTTGAATCCTCCAGTGGTTG-GATCAAACC-TGA-A---TG---G-GAT 992
Query 1000 TGTTCTGATCGTGATAGTGCTTACTGGTTTGTTATGTGGAAAGATCTTAGCCATTGTTTT 1059
||||||||||||||| ||||| || |||||||||||||| ||| ||||||| |||||| |
Sbjct 993 TGTTCTGATCGTGATTGTGCTAACCGGTTTGTTATGTGGGAAGGTCTTAGCTATTGTTCT 1052
Query 1060 AACACTATCCTGTTTGGTTCTTAGATTTGGAGAAGTCaaaaaaaTATAATCTTTGCatat 1119
|||||||| ||||||||||||||||| |||| |||||||||| | ||||||||||||||
Sbjct 1053 GACACTATCATGTTTGGTTCTTAGATTAGGAGCAGTCAAAAAAGT-TAATCTTTGCATAT 1111
Query 1120 aaatttttt-gtatatttttaaacatgtttgcatatgaaactgtaattttttcttatttt 1178
|| |||||| |||| ||||||| |||| |||||| ||||||||||| ||||||| |||
Sbjct 1112 AATTTTTTTTGTAT-TTTTTAA-CATGCTTGCATGTGAAACTGTAAATTTTTCTCATTC- 1168
Query 1179 atatGAAGGAGATTGGAT 1196
||||||||||||||||||
Sbjct 1169 ATATGAAGGAGATTGGAT 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5