BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494557
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50010.1 | Symbols: TUA2 | tubulin alpha-2 chain | chr1:1851... 2475 0.0
AT1G04820.1 | Symbols: TUA4, TOR2 | tubulin alpha-4 chain | chr... 2255 0.0
AT4G14960.2 | Symbols: TUA6 | Tubulin/FtsZ family protein | chr... 2169 0.0
AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-2... 640 0.0
> AT1G50010.1 | Symbols: TUA2 | tubulin alpha-2 chain | chr1:18517586-18520000
FORWARD LENGTH=1775
Length=1775
Score = 2475 bits (1340), Expect = 0.0
Identities = 1570/1676 (94%), Gaps = 35/1676 (2%)
Strand=Plus/Plus
Query 26 AGAGCGTCTTCATAAACGCCcttcttcgtcttcttcttcttccctgc-aa---a---tct 78
||||||||||||||||||||||||||| ||||| ||||||||||||| || | |||
Sbjct 63 AGAGCGTCTTCATAAACGCCCTTCTTCTTCTTCGTCTTCTTCCCTGCAAATCTAGTTTCT 122
Query 79 ag----tttctttcttcCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTC 134
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AGATCTTTTCTTTCTTCCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTC 182
Query 135 AGGCCGGTATCCAGGTCGGAAACGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTC 194
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 183 AGGCCGGTATCCAGGTCGGAAATGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTC 242
Query 195 AGCCTGATGGTCAGATGCCCAGTGACAAGACTGTTGGCGGAGGTGACGATGCTTTCAACA 254
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AGCCTGATGGCCAGATGCCGAGTGACAAGACTGTTGGCGGAGGTGACGATGCTTTCAACA 302
Query 255 CCTTCTTCAGTGAAACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTG 314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CCTTCTTCAGTGAGACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTG 362
Query 315 AGCCAACTGTGATCGATGAGGTTAGGACTGGTACATACCGTCAGCTTTTCCACCCTGAGC 374
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 363 AGCCAACTGTGATCGATGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAGC 422
Query 375 AACTCATCAGCGGTAAAGAAGATGCAGCTAACAACTTCGCCCGTGGACATTACACCATTG 434
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 423 AACTCATCAGCGGTAAAGAAGACGCAGCTAACAATTTCGCCCGTGGGCATTACACCATTG 482
Query 435 GGAAAGAGATTGTTGATCTGTGCTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGAAAGAGATTGTTGATCTGTGCTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTG 542
Query 495 GTCTCCAAGGATTCCTTGTCTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTTGGAT 554
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 543 GTCTCCAAGGATTCCTCGTCTTCAACGCTGTTGGTGGAGGGACTGGATCTGGTCTTGGAT 602
Query 555 CTCTCCTCCTTGAGAGACTTTCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTG 614
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 603 CTCTCCTCCTTGAGAGACTTTCTGTTGACTACGGGAAAAAGTCCAAGTTGGGTTTCACAG 662
Query 615 TTTACCCATCTCCACAGGTCTCTACCTCCGTTGTTGAGCCATACAACAGTGTCCTCTCCA 674
|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 663 TTTACCCATCTCCACAGGTCTCCACCTCTGTTGTTGAGCCTTACAACAGTGTCCTCTCCA 722
Query 675 CTCACTCTCTCTTGGAACACACTGATGTCTCCATCCTCCTCGATAACGAAGCTATCTATG 734
||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 723 CTCACTCACTCTTGGAACACACTGATGTCTCTATCCTCCTCGACAATGAAGCTATCTATG 782
Query 735 ACATCTGCAGACGCTCCCTAAGCATTGAGCGACCAACCTACACCAACCTCAACCGTCTTG 794
||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 783 ACATCTGCAGACGTTCCCTAAGCATTGAGAGACCCACCTACACCAACCTCAACCGTCTCG 842
Query 795 TCTCTCAGGTGATCTCATCCTTGACTGCTTCTCTTAGGTTTGATGGTGCCTTGAACGTGG 854
|||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 843 TCTCTCAGGTTATCTCATCCTTGACTGCTTCTCTGAGGTTCGATGGTGCCTTGAATGTTG 902
Query 855 ATGTCACTGAGTTCCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCGT 914
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 903 ATGTGACTGAGTTCCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCCT 962
Query 915 CCTACGCACCAGTCATCTCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTGAGA 974
|||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 963 CCTATGCCCCAGTCATCTCCGCAGAGAAGGCCTTCCATGAGCAGCTCTCGGTTGCTGAGA 1022
Query 975 TCACAAACAGTGCTTTTGAGCCAGCTTCCATGATGGCTAAGTGTGACCCACGTCATGGCA 1034
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || |
Sbjct 1023 TCACAAACAGTGCTTTTGAGCCAGCATCCATGATGGCAAAGTGTGACCCTCGTCACGGAA 1082
Query 1035 AGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATGTGAACGCAG 1094
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1083 AGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTCGTCCCCAAGGATGTGAACGCAG 1142
Query 1095 CTGTTGGCACAATCAAGACCAAGCGCACTATTCAGTTTGTTGACTGGTGTCCCACTGGGT 1154
|||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct 1143 CTGTTGGCACCATCAAGACCAAGCGTACTATTCAGTTTGTGGACTGGTGTCCTACTGGAT 1202
Query 1155 TCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAG 1214
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 TCAAGTGTGGAATCAACTACCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAG 1262
Query 1215 TCCAGAGAGCTGTTTGTATGATCTCAAATTCCACCAGTGTTGCTGAGGTGTTCTCCCGTA 1274
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1263 TCCAGAGAGCTGTGTGTATGATCTCAAACTCCACCAGTGTTGCTGAGGTGTTCTCCCGTA 1322
Query 1275 TTGATCACAAGTTTGATCTTATGTACGCCAAACGTGCTTTCGTTCACTGGTATGTGGGTG 1334
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1323 TTGATCACAAGTTTGATCTTATGTACGCAAAACGTGCTTTCGTTCACTGGTATGTGGGTG 1382
Query 1335 AGGGTATGGAAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGG 1394
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1383 AGGGTATGGAAGAAGGAGAATTTTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGG 1442
Query 1395 ATTATGAAGAGGTTGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACT 1454
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 ATTACGAAGAGGTTGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACT 1502
Query 1455 AAGAAGGGTGTGGGTTTTATGTGGGCTTTCTATTATATTATCTCGTATTTGTGTGAGTGG 1514
||||||| ||| ||||||||||||| |||||||||| ||||| ||||||||| | |
Sbjct 1503 AAGAAGGTTGTCGGTTTTATGTGGGATTTCTATTAT-----CTCGTGTTTGTGTGAATAG 1557
Query 1515 GCTCGAAACTCTTACGAGTC-T--TTGTTGTTTTCCAAAAACCATATTTCTATCTCTTGC 1571
|||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||
Sbjct 1558 GCTCGAAACTCTTACGAGTCGTACTTGT-GTTTTC-AAAAACCATATTTCTATCTCTTGC 1615
Query 1572 TTGTGGCGGTAGCCATTTGTTTTATATTA-TGTAGTTT-TG-TCATATCTCTT-ATCTAC 1627
||||||||||||||||||||| || || | | |||| || | |||| | || |||| |
Sbjct 1616 TTGTGGCGGTAGCCATTTGTTCTAG-TTCGTTT-GTTTCTGATAATAT-T-TTCATCTCC 1671
Query 1628 AAGAACTGAATTTAACCTTAAGCTGAGTTTGGTTTGAATCGATTGTCCAAAATCTA 1683
||||||||||||||| || | | ||||||||| ||||||||||||||||||||
Sbjct 1672 AAGAACTGAATTTAAGCT---G--G-GTTTGGTTTAAATCGATTGTCCAAAATCTA 1721
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 TAAAAACCTAGAAATCGAAAAAATCAGA 28
||||||||||||||||||||||||||||
Sbjct 20 TAAAAACCTAGAAATCGAAAAAATCAGA 47
> AT1G04820.1 | Symbols: TUA4, TOR2 | tubulin alpha-4 chain | chr1:1356191-1358386
REVERSE LENGTH=1703
Length=1703
Score = 2255 bits (1221), Expect = 0.0
Identities = 1366/1435 (95%), Gaps = 14/1435 (1%)
Strand=Plus/Plus
Query 26 AGAGCGTCTTCATAAACGCCcttcttcgtcttcttcttcttccctgcaaatctagtttct 85
|||||||||||||||||| || ||||| |||||||||||| |||||||||||||
Sbjct 57 AGAGCGTCTTCATAAACG-CC--CTTCG------TCTTCTTCCCTGGAAATCTAGTTTCT 107
Query 86 ttcttcCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTCAGGCCGGTATC 145
||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 108 TTCTT-C-C---ACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTCAGGCTGGTATC 162
Query 146 CAGGTCGGAAACGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCTGATGGT 205
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 163 CAGGTCGGAAATGCTTGCTGGGAGCTGTACTGTCTTGAACATGGCATTCAGCCTGATGGC 222
Query 206 CAGATGCCCAGTGACAAGACTGTTGGCGGAGGTGACGATGCTTTCAACACCTTCTTCAGT 265
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 223 CAGATGCCGAGTGACAAGACTGTTGGTGGAGGTGACGATGCTTTCAACACCTTCTTCAGT 282
Query 266 GAAACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTG 325
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GAAACCGGTGCAGGTAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTG 342
Query 326 ATCGATGAGGTTAGGACTGGTACATACCGTCAGCTTTTCCACCCTGAGCAACTCATCAGC 385
||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 343 ATCGACGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAACAACTCATCAGC 402
Query 386 GGTAAAGAAGATGCAGCTAACAACTTCGCCCGTGGACATTACACCATTGGGAAAGAGATT 445
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 403 GGTAAAGAAGATGCAGCTAACAATTTCGCCCGTGGTCATTACACCATTGGGAAAGAGATT 462
Query 446 GTTGATCTGTGCTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTGGTCTCCAAGGA 505
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 463 GTTGACCTGTGCTTAGACCGTATCAGAAAGCTTGCTGATAACTGTACTGGTCTCCAAGGA 522
Query 506 TTCCTTGTCTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTTGGATCTCTCCTCCTT 565
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 523 TTCCTCGTCTTCAACGCTGTTGGTGGAGGGACTGGATCTGGTCTTGGATCTCTCCTCCTT 582
Query 566 GAGAGACTTTCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTGTTTACCCATCT 625
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 583 GAGAGACTTTCTGTTGACTACGGGAAAAAGTCCAAGTTGGGTTTCACAGTTTACCCATCT 642
Query 626 CCACAGGTCTCTACCTCCGTTGTTGAGCCATACAACAGTGTCCTCTCCACTCACTCTCTC 685
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 643 CCACAGGTCTCTACCTCCGTTGTTGAGCCTTACAACAGTGTCCTCTCCACTCACTCTCTC 702
Query 686 TTGGAACACACTGATGTCTCCATCCTCCTCGATAACGAAGCTATCTATGACATCTGCAGA 745
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 703 TTGGAACACACTGATGTCTCCATCCTCCTCGACAATGAAGCTATCTATGACATCTGCAGA 762
Query 746 CGCTCCCTAAGCATTGAGCGACCAACCTACACCAACCTCAACCGTCTTGTCTCTCAGGTG 805
|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 763 CGCTCCCTAAGCATTGAGAGACCAACCTACACCAACCTCAACCGCCTCGTCTCTCAGGTT 822
Query 806 ATCTCATCCTTGACTGCTTCTCTTAGGTTTGATGGTGCCTTGAACGTGGATGTCACTGAG 865
|| || ||||||||||||||||| ||||||||||||||||| || || ||||||||||||
Sbjct 823 ATTTCTTCCTTGACTGCTTCTCTGAGGTTTGATGGTGCCTTAAATGTTGATGTCACTGAG 882
Query 866 TTCCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCGTCCTACGCACCA 925
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 883 TTCCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCCCCA 942
Query 926 GTCATCTCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTGAGATCACAAACAGT 985
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GTCATCTCCGCAGAGAAAGCCTTCCATGAGCAACTCTCAGTTGCTGAGATCACAAACAGT 1002
Query 986 GCTTTTGAGCCAGCTTCCATGATGGCTAAGTGTGACCCACGTCATGGCAAGTACATGGCT 1045
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1003 GCTTTTGAGCCAGCTTCCATGATGGCTAAGTGTGACCCACGTCACGGAAAGTACATGGCT 1062
Query 1046 TGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATGTGAACGCAGCTGTTGGCACA 1105
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1063 TGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATGTAAACGCAGCTGTTGGCACC 1122
Query 1106 ATCAAGACCAAGCGCACTATTCAGTTTGTTGACTGGTGTCCCACTGGGTTCAAGTGTGGT 1165
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1123 ATCAAGACCAAGCGCACTATTCAGTTTGTTGACTGGTGTCCTACTGGATTCAAGTGTGGT 1182
Query 1166 ATCAACTATCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAGTCCAGAGAGCT 1225
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1183 ATCAACTACCAGCCACCAACAGTTGTTCCAGGAGGTGATCTTGCTAAAGTCCAGAGAGCT 1242
Query 1226 GTTTGTATGATCTCAAATTCCACCAGTGTTGCTGAGGTGTTCTCCCGTATTGATCACAAG 1285
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GTTTGCATGATCTCAAACTCGACCAGTGTTGCTGAGGTGTTCTCCCGTATTGATCACAAG 1302
Query 1286 TTTGATCTTATGTACGCCAAACGTGCTTTCGTTCACTGGTATGTGGGTGAGGGTATGGAA 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TTTGATCTTATGTACGCCAAACGTGCTTTCGTTCACTGGTATGTGGGTGAGGGTATGGAA 1362
Query 1346 GAAGGAGAATTCTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGGATTATGAAGAG 1405
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GAAGGAGAATTCTCAGAGGCACGTGAGGATCTTGCAGCATTGGAGAAGGATTATGAAGAG 1422
Query 1406 GTTGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACTAAGAAG 1460
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1423 GTCGGTGCTGAAGGTGGTGACGATGAAGATGATGAAGGAGAGGAATACTAAGAAG 1477
> AT4G14960.2 | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548492-8550453
REVERSE LENGTH=1764
Length=1764
Score = 2169 bits (1174), Expect = 0.0
Identities = 1451/1580 (92%), Gaps = 38/1580 (2%)
Strand=Plus/Plus
Query 26 AGAGCGTCTTCATAAACGCCcttcttcgtcttcttcttcttc-cctgc-a-aatctag-- 80
|||||||||||||||||| || ||||||||||||| || | | | | |||||
Sbjct 56 AGAGCGTCTTCATAAACG-CC--CTTCGTCTTCTTC-CCTGCAAAT-CTATTTTCTAGAT 110
Query 81 -tttctttcttcCGCGAAACGAAAATGAGAGAGTGCATTTCGATCCACATTGGTCAGGCC 139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 111 CTTTCTTTCTTCCGCGAAACGACAATGAGAGAGTGCATTTCGATCCACATTGGTCAGGCT 170
Query 140 GGTATCCAGGTCGGAAACGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCT 199
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GGTATTCAAGTCGGAAATGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCT 230
Query 200 GATGGTCAGATGCCCAGTGACAAGACTGTTGGCGGAGGTGACGATGCTTTCAACACCTTC 259
||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 231 GATGGCCAGATGCCTGGTGACAAGACTGTTGGTGGAGGTGATGATGCTTTCAACACCTTC 290
Query 260 TTCAGTGAAACCGGTGCAGGGAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCA 319
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTCAGTGAAACCGGTGCAGGTAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCA 350
Query 320 ACTGTGATCGATGAGGTTAGGACTGGTACATACCGTCAGCTTTTCCACCCTGAGCAACTC 379
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 351 ACTGTGATCGACGAGGTCAGGACTGGTACTTACCGTCAGCTTTTCCACCCTGAACAACTC 410
Query 380 ATCAGCGGTAAAGAAGATGCAGCTAACAACTTCGCCCGTGGACATTACACCATTGGGAAA 439
||||| ||||||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 411 ATCAGTGGTAAAGAAGACGCTGCTAACAATTTCGCCCGTGGTCATTACACCATTGGGAAA 470
Query 440 GAGATTGTTGATCTGTGCTTGGACCGTATCAGAAAGCTCGCTGATAACTGTACTGGTCTC 499
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 471 GAGATTGTTGATCTCTGCTTGGACCGGATCAGAAAGCTCGCTGATAACTGTACTGGTCTT 530
Query 500 CAAGGATTCCTTGTCTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTTGGATCTCTC 559
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 531 CAAGGATTCCTTGTTTTCAACGCTGTTGGTGGTGGGACTGGATCTGGTCTTGGATCTCTT 590
Query 560 CTCCTTGAGAGACTTTCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTGTTTAC 619
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 591 CTCCTTGAGAGACTTTCTGTTGACTATGGGAAAAAGTCCAAGTTGGGTTTCACTGTTTAC 650
Query 620 CCATCTCCACAGGTCTCTACCTCCGTTGTTGAGCCATACAACAGTGTCCTCTCCACTCAC 679
|||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 651 CCATCTCCACAGGTGTCTACCTCTGTGGTTGAGCCTTACAACAGTGTCCTCTCCACTCAC 710
Query 680 TCTCTCTTGGAACACACTGATGTCTCCATCCTCCTCGATAACGAAGCTATCTATGACATC 739
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 711 TCTCTCTTGGAACACACTGATGTCTCCATCCTCCTCGACAATGAAGCTATCTATGACATC 770
Query 740 TGCAGACGCTCCC-TAAGCATTGAGCGACCAACCTACACCAACCTCAACCGTCTTGTCTC 798
|| |||||||||| ||| ||||||| |||| ||||||||||||||||||||||| |||||
Sbjct 771 TGTAGACGCTCCCTTAA-CATTGAGAGACCTACCTACACCAACCTCAACCGTCTCGTCTC 829
Query 799 TCAGGTGATCTCATCCTTGACTGCTTCTCTTAGGTTTGATGGTGCCTTGAACGTGGATGT 858
|||||| || || ||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 830 TCAGGTTATTTCTTCCTTGACTGCTTCTCTGAGGTTCGATGGTGCCTTGAATGTTGATGT 889
Query 859 CACTGAGTTCCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCGTCCTA 918
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 890 TACTGAGTTCCAAACCAACTTGGTTCCATACCCAAGGATCCACTTCATGCTTTCGTCCTA 949
Query 919 CGCACCAGTCATCTCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTGAGATCAC 978
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TGCACCAGTCATCTCCGCGGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTGAGATCAC 1009
Query 979 AAACAGTGCTTTTGAGCCAGCTTCCATGATGGCTAAGTGTGACCCACGTCATGGCAAGTA 1038
|||||||| ||||| || |||||||||||||| ||||||||||| || ||||| |||||
Sbjct 1010 GAACAGTGCCTTTGAACCTGCTTCCATGATGGCAAAGTGTGACCCGCGACATGGAAAGTA 1069
Query 1039 CATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATGTGAACGCAGCTGT 1098
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1070 CATGGCTTGCTGTTTGATGTACCGTGGTGATGTAGTCCCCAAGGATGTGAACGCAGCGGT 1129
Query 1099 TGGCACAATCAAGACCAAGCGCACTATTCAGTTTGTTGACTGGTGTCCCACTGGGTTCAA 1158
|||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1130 TGGCACCATCAAGACCAAGCGAACTATTCAGTTTGTTGACTGGTGTCCTACTGGATTCAA 1189
Query 1159 GTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCAGGAGGTGATCTTGCTAAAGTCCA 1218
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1190 GTGTGGTATCAACTACCAGCCACCAACTGTTGTTCCTGGAGGTGATCTTGCTAAAGTCCA 1249
Query 1219 GAGAGCTGTTTGTATGATCTCAAATTCCACCAGTGTTGCTGAGGTGTTCTCCCGTATTGA 1278
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1250 GAGAGCTGTTTGTATGATCTCAAACTCAACCAGTGTTGCTGAGGTATTCTCCCGTATTGA 1309
Query 1279 TCACAAGTTTGATCTTATGTACGCCAAACGTGCTTTCGTTCACTGGTATGTGGGTGAGGG 1338
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1310 TCACAAGTTTGATCTTATGTACGCCAAACGTGCTTTCGTTCACTGGTATGTTGGTGAGGG 1369
Query 1339 TATGGAAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGGATTA 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TATGGAAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCTTGCAGCATTGGAGAAGGATTA 1429
Query 1399 TGAAGAGGTTGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAGTACTAAGA 1458
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1430 TGAAGAGGTCGGTGCTGAAGGTGGTGACGATGAGGATGATGAAGGAGAGGAATACTAAGA 1489
Query 1459 AGGGTGTG-----------GG-TTTTATGT-GGGCTTTCTATTATATTATCTCGTATTTG 1505
|| ||| || |||| ||| ||| ||| | | ||||||||||| || |
Sbjct 1490 AGAATGTTTCTTAAAAATTGGATTTTGTGTTGGGTTTT-TCTC-TATTATCTCGTGTT-G 1546
Query 1506 TG-TGAGTGGG--CTCGAAACTCTTACGAGTCTT--T-GT-TGTTTTCCAAAAACC-ATA 1557
|| ||| |||| ||||||||||||||||||||| | || |||||| | ||| || |||
Sbjct 1547 TGATGAATGGGGGCTCGAAACTCTTACGAGTCTTAGTTGTGTGTTTTTCTAAA-CCTATA 1605
Query 1558 TTTCTATCTCTTGCTTGTGG 1577
||||||||||||||| ||||
Sbjct 1606 TTTCTATCTCTTGCTGGTGG 1625
> AT1G64740.1 | Symbols: TUA1 | alpha-1 tubulin | chr1:24050006-24052487
FORWARD LENGTH=1652
Length=1652
Score = 640 bits (346), Expect = 0.0
Identities = 1065/1403 (76%), Gaps = 85/1403 (6%)
Strand=Plus/Plus
Query 99 CGAAAATGAGAGAG-TGCATTTCG-ATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAA 156
|||| ||||| ||| | || || | || || || || || || ||||| |||||||||||
Sbjct 104 CGAACATGAGGGAGAT-CA-TTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAA 161
Query 157 CGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCTGATGGTCA-GATGCCCA 215
|||| ||||||||||| ||||| |||||||| || || || ||||| || |||||||
Sbjct 162 TTCTTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGG-CACCATGCCCA 220
Query 216 GTGACAAG-ACTGTTGGCGGAGGTGACGATGCTTTCAACACCTTCTTCAGTGAAAC-CGG 273
|||| || |||||||| | | || | ||||| |||||||| ||||| || || || |
Sbjct 221 GTGA-TAGTACTGTTGGTGCATGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGC 279
Query 274 TGCAGG-GAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTGATCGATG 332
| |||| || || || || || ||||| ||| ||||||| || ||||| || || || |
Sbjct 280 T-CAGGCCAA-CATGTGCCTCGAGCTGTGTTTCTTGATCTCGAACCAACCGTCATTGACG 337
Query 333 AGGTTAGGACTGGTACATACCGTCAGCTTTTCCA-CCCTGAGCAACTCATCAGC-GGTAA 390
| || || || || || ||| | ||||||||||| ||| |||||||| ||| | || ||
Sbjct 338 AAGTAAGAACCGGCACTTACAGACAGCTTTTCCATCCC-GAGCAACTTATC-TCTGGCAA 395
Query 391 AGAAGATGCAGCTAACAACTTCGCCCGTGGACATTACACCATTGGGAA-AGAGATTGTTG 449
|||||||||||| || ||||| || | || |||||||| || |||| || |||||||
Sbjct 396 AGAAGATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTT-GGAAGGGAAATTGTTG 454
Query 450 --ATCTGTGCTTGGACCGTATCA-GAAAGCTCGCTGATAACTGTAC-TGGTCTCCAAGGA 505
| ||| ||| || | | | |||| | || || || || || ||| | ||||||
Sbjct 455 ACACCTG-CCTT-GAAAGGCTGAGGAAA-TTGGCAGACAATTGCACAGGGT-TACAAGGA 510
Query 506 TTCCTT-GTCTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTT-GGATCTCTCCTCC 563
|| || || ||||| |||||||| || || || || |||||| || || ||| | ||
Sbjct 511 TT-TTTGGTATTCAATGCTGTTGGGGGTGGAACAGGTTCTGGT-TTGGGTTCTTTACT-G 567
Query 564 TT-GAGAGACTT-TCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTGTTTACCC 621
|| ||| | ||| || || || | ||| ||||| || || | |||||||| | |||||
Sbjct 568 TTGGAGCG-CTTGTCCGTAGATTTTGGAAAAAAATCAAAACTCGGTTTCACCATCTACCC 626
Query 622 ATCTCCACAGGTCTCTACCTCCGTTGTTGAGCCATACAACAGTGTCCTCTCCACTCACTC 681
||||| ||||| ||||| | ||||| ||||| || |||||||| ||||| ||||| ||
Sbjct 627 TTCTCCTCAGGTTTCTACAGCAGTTGTGGAGCCGTATAACAGTGTTCTCTCGACTCATTC 686
Query 682 TC-TCTTGGAACACACTGATG-TCTCCATCCTCCTCGATAACGAAGCTATCTATGACATC 739
|| || | |||||||| |||| | | | || | || || ||||| || || || |||
Sbjct 687 TCTTC-TCGAACACACAGATGTTGT-TGTTCTTTTGGACAATGAAGCCATATACGATATC 744
Query 740 TGCA-GACGCTCCCTAAG-CATTGAGCGACCAACCTACACCAACCTCAACCGTCTTG-TC 796
|||| || | | | | || ||||||| | || || ||| |||| | ||||| |||| ||
Sbjct 745 TGCAGGA-GAT-CTTTAGACATTGAGAGGCCTACATACTCCAATTTGAACCG-CTTGATC 801
Query 797 TCTCAGGTGATCTCATC-CTTGACTGCTTCTCTTAGGTTTGATGGTGCCTTGAACGTGGA 855
|| || ||||| || ||| || ||||||| || ||||| |||||| | || |||||
Sbjct 802 TCCCAAACCATCTCTTCGCTT-ACAACTTCTCTAAGATTTGACGGTGCCATCAATGTGGA 860
Query 856 TGTCACTGAGTTCCAAACCAA-CTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCGT 914
|||| |||||||| ||||| ||| || || ||||| | |||||||||||||| || |
Sbjct 861 CATCACCGAGTTCCAGACCAACCTT-GTACCTTACCCTCGGATCCACTTCATGCTCTCCT 919
Query 915 CCTACGCACCAGTCA--TC-TCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTG 971
| || ||||| || | || ||||| | ||||||| ||||||||| | || || |||
Sbjct 920 CTTATGCACCTGTGATTTCATCTGC--A-AAGGCCTACCATGAGCAGTTTTCGGTCCCTG 976
Query 972 AGATCACAAACAGTGC-T-TTTGAGCCAGCTTCC---ATGATGGCTAAGTGTGACCC-AC 1025
||||||| || | | | ||||| || | ||| ||||||||||| |||||||| |
Sbjct 977 AGATCAC-GAC-TTCCGTCTTTGAACC--C-TCCAATATGATGGCTAAATGTGACCCTA- 1030
Query 1026 GTCATGGCAAGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATG 1085
| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1031 GGCATGGCAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGACGTTGTGCCCAAGGATG 1090
Query 1086 TGAACGCAGCTGTTG--GCACAATCAA-GACCAAGCGCACTATTCAGTTTGTTGACTGGT 1142
| || |||| |||| || || |||| | |||| || || |||||||||||||||||||
Sbjct 1091 TCAATACAGCCGTTGCTGC-CA-TCAAAG-CCAAACGAACAATTCAGTTTGTTGACTGGT 1147
Query 1143 GTCCCA-CTGGGTTCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCAGGAGGT 1201
| |||| |||| |||||||| || || ||||| ||||| || | ||||||||||| |||
Sbjct 1148 G-CCCAACTGGATTCAAGTGCGGGATAAACTACCAGCCGCCTTCCGTTGTTCCAGGTGGT 1206
Query 1202 GATCTTGCTAAAGTCCAGA-GAGCTGTTTGTATGATCT-CAA-ATTCCACCAGTGTTGCT 1258
|| || ||||| || || | |||| ||||| |||||| ||| | | | |||| | |||
Sbjct 1207 GACCTGGCTAAGGTTCA-ACGAGCGGTTTGCATGATCAGCAATAATACTGCAGT-T-GCT 1263
Query 1259 GAGGTGTTCTCCCGTATTGATCACAAGTTTGATCTTATGTACGCCAAACGTGC-TTTCGT 1317
|| |||||||| ||||| || || ||||||||||| |||||| ||||| | || ||| ||
Sbjct 1264 GAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTT-GT 1322
Query 1318 TCACTGGTATGTGGGTGAGGGTATGGAAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCT 1377
|| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1323 CCATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCT 1382
Query 1378 TGCAGCATTGGAGAAGGATTATGAAGAGGTTGGTGCTGAAGGTG-GTGACGATGAGGATG 1436
||| || | ||||| |||||||| || ||||||| ||||| | | || || || || |
Sbjct 1383 TGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCG-GAGGACGACGACG 1441
Query 1437 ATGAAGGAGAGGAGTACTAAGAA 1459
| ||||| || ||||| || |||
Sbjct 1442 AAGAAGGCGATGAGTATTA-GAA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5