BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494559 Length=1099 Score E Sequences producing significant alignments: (Bits) Value AT5G44310.2 | Symbols: | Late embryogenesis abundant protein (... 1524 0.0 > AT5G44310.2 | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr5:17847781-17849536 REVERSE LENGTH=1313 Length=1313 Score = 1524 bits (825), Expect = 0.0 Identities = 995/1078 (92%), Gaps = 7/1078 (1%) Strand=Plus/Plus Query 1 AAGAAGAAGAAATTGTTTCTT-TGATTGATGAACATGGCGGCTATGCAACTAACGAGAAC 59 |||||||||||||||||| || |||||||| || |||||||||||||| |||||||||| Sbjct 68 AAGAAGAAGAAATTGTTT-TTGTGATTGATTAATATGGCGGCTATGCAGTTAACGAGAAC 126 Query 60 GGTTTTCTTCGGTCTCTCAAAGGCTTTCCCCAAAAGCCAAGCTCCGAGAACTCTTGCGGT 119 |||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||| Sbjct 127 GGTTTTCTTCGGGATCTCGAAGGCTTTCCCTAAAAGCCAAGCTCCTAGAACTCTTGCGGT 186 Query 120 GGTGATTGGTCGGAAAAGCTCTCGTGTCTTTTTTGCCTCGTCGGTTAACCATTCTAAGGG 179 | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 187 AGCGATTGGTCGGAAAAGCTCTCGTGTCTTTTTTGCATCGTCGGTTAACCATTCTAAGGG 246 Query 180 AAGATATGATCCGGTAGAGAAAGCGAGAGACTCGAGGGCCGATTTGGCGTATGATTCGAA 239 |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 247 AAGATATGATCCAGTAGAGAAAGCGAGAGACTCGAGGGCCGACTTGGCATATGATTCGAA 306 Query 240 GAAATGGAGAGAAGAATCCGGAGAATACGCAGAAGCAGGCAAAGAGAAAGCCCACGAGAT 299 ||||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||| Sbjct 307 AAAATGGAGAGAAGAATCAGGAGAATACGCAGAAGCAGGTAAAGGGAAAGCCCACAAGAC 366 Query 300 AAAAGAGGAAGCTAAAGACAAAGCTTACGATGTGAAAGAGAGAACGAAAGATTATGCTGA 359 ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 367 AAAAGAGGAAGCTAAGGACAAAGCTTACGATATGAAAGAGAGAACGAAAGATTATGCTGA 426 Query 360 ACAAACTAAGGGTAAAGTGAATGAAAGAGCAAGCAGAGCCGCTGATAAAGCCTACGAAAC 419 |||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || || Sbjct 427 ACAAACTAAGAATAAAGTGAATGAAGGAGCAAGCAGAGCAGCTGATAAAGCCTATGAGAC 486 Query 420 GAAAGAGAAGGCCAAGGACAAAGCCTATGACGTGAAAGAGAAGACAAAAGATTACGCAGA 479 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 487 GAAAGAGAAGGCCAAGGACAAAGCCTATGATGTGAAAGAGAAGACGAAAGATTACGCAGA 546 Query 480 AGAAACTAAGGATAAAGTCAATGAAGGAGCAAGTAGAGCAGCTGATAAAGCCTACGAGAC 539 ||| | |||||||| || ||||||||||| |||||||| ||||||||||| |||||||| Sbjct 547 AGAGGCCAAGGATAAGGTGAATGAAGGAGCTAGTAGAGCTGCTGATAAAGCTTACGAGAC 606 Query 540 GAAAGAGAAGGCTAAGGACAAAGCCTATGATGTGAAAGAGAAGGCAAAAGATTACGCAGA 599 |||||||||||||| ||||||||||||||||||||||||||| ||||||||| || || Sbjct 607 AAAAGAGAAGGCTAAAGACAAAGCCTATGATGTGAAAGAGAAGACAAAAGATTTTGCGGA 666 Query 600 AGAAACTAAGGATAAAGTCAAGGAAGGAGCAAGTAGAGCAGCTGATAAAGCTTACGATGT 659 |||||||||||| ||||| || |||||||| ||||||||||| ||||||||||| ||||| Sbjct 667 AGAAACTAAGGAGAAAGTGAATGAAGGAGCGAGTAGAGCAGCAGATAAAGCTTATGATGT 726 Query 660 GAAGGAGAAAACGAAGGATTATGCGGAACAAACTAAGGATAAGGTGAATGAAGGAGCGAA 719 ||||||||| || ||| |||||||||||||||| || ||||| |||||||||||||||| Sbjct 727 GAAGGAGAAGACAAAGAATTATGCGGAACAAACAAAAGATAAAGTGAATGAAGGAGCGAG 786 Query 720 TAGAGCTGCGGATAAAGCAGAAGAAACAAAAGATAAAGCCAAGGACTATGCAGAGGACTC 779 |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 787 TAGAGCTGCGGATAAAGCTGAAGAGACAAAAGATAAAGCAAAGGACTATGCAGAGGACTC 846 Query 780 AAAGGAGAAAGCAGAGGATATGGCACATGGGTTTAAAGAAAAGGCTCAAGATATTGGGGA 839 |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| Sbjct 847 AAAGGAGAAAGCAGAGGACATGGCTCATGGGTTTAAGGAAAAGGCTCAAGATATTGGGGA 906 Query 840 GAAGACTAAGGAGACTGTGAAAGATGTGTGGGAGACGGCGAAGAGCACGGCTCAGAAGGT 899 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 907 GAAGACTATGGATACTGTGAAAGATGTGTGGGAGACGGCGAAGAGCACGGCTCAGAAGGT 966 Query 900 GACTGAGGCTGTGGTTGGGTCCGGTGAGGAGGCGGATAGGGCTAGGGATGATGTTGATAA 959 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 967 GACTGAGGCTGTGGTTGGGTCCGGTGAGGAGGCGGATAAGGCTAGGGATGATGTTGATAA 1026 Query 960 AGGCTTGGAGGATCTGTCGAAAAAGGCGAATGAAAATCGGAATAAGGATGATGATTTCAA 1019 |||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1027 GGGCTTGGAAGATTTGTCGAAAAAGGCGAAGGAAAATCGAAATAAGGATGATGATTTCAA 1086 Query 1020 GAGGTTCTAAATTCACTAATCATCTTGT-ACTTTAATTTTCTTTTGTTGT-ATGTTTA 1075 ||||||||||||| ||| |||||||||| || || || ||||||||||| || |||| Sbjct 1087 GAGGTTCTAAATTTACTGATCATCTTGTTACCTT--TTCTCTTTTGTTGTTAT-TTTA 1141 Score = 287 bits (155), Expect = 2e-76 Identities = 222/254 (87%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 406 AAAGCCTACGAA-ACGAAAGA-GAAGGCCAAGGACAAAGCCTATGACGTGAAAGAGAAG- 462 |||||| || || || ||||| ||| || ||||||||||| || || |||||||| || Sbjct 353 AAAGCCCAC-AAGACAAAAGAGGAA-GCTAAGGACAAAGCTTACGATATGAAAGAG-AGA 409 Query 463 ACAAAAGATTACGCAGAAGAAACTAAGGATAAAGTCAATGAAGGAGCAAGTAGAGCAGCT 522 || |||||||| || ||| |||||||| ||||||| |||||||||||||| ||||||||| Sbjct 410 ACGAAAGATTATGCTGAACAAACTAAGAATAAAGTGAATGAAGGAGCAAGCAGAGCAGCT 469 Query 523 GATAAAGCCTACGAGACGAAAGAGAAGGCTAAGGACAAAGCCTATGATGTGAAAGAGAAG 582 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 470 GATAAAGCCTATGAGACGAAAGAGAAGGCCAAGGACAAAGCCTATGATGTGAAAGAGAAG 529 Query 583 GCAAAAGATTACGCAGAAGAAACTAAGGATAAAGTCAAGGAAGGAGCAAGTAGAGCAGCT 642 | ||||||||||||||||| | |||||||| || || |||||||| |||||||| ||| Sbjct 530 ACGAAAGATTACGCAGAAGAGGCCAAGGATAAGGTGAATGAAGGAGCTAGTAGAGCTGCT 589 Query 643 GATAAAGCTTACGA 656 |||||||||||||| Sbjct 590 GATAAAGCTTACGA 603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53865184785 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5