BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494559
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44310.2 | Symbols: | Late embryogenesis abundant protein (... 1524 0.0
> AT5G44310.2 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr5:17847781-17849536 REVERSE LENGTH=1313
Length=1313
Score = 1524 bits (825), Expect = 0.0
Identities = 995/1078 (92%), Gaps = 7/1078 (1%)
Strand=Plus/Plus
Query 1 AAGAAGAAGAAATTGTTTCTT-TGATTGATGAACATGGCGGCTATGCAACTAACGAGAAC 59
|||||||||||||||||| || |||||||| || |||||||||||||| ||||||||||
Sbjct 68 AAGAAGAAGAAATTGTTT-TTGTGATTGATTAATATGGCGGCTATGCAGTTAACGAGAAC 126
Query 60 GGTTTTCTTCGGTCTCTCAAAGGCTTTCCCCAAAAGCCAAGCTCCGAGAACTCTTGCGGT 119
|||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 127 GGTTTTCTTCGGGATCTCGAAGGCTTTCCCTAAAAGCCAAGCTCCTAGAACTCTTGCGGT 186
Query 120 GGTGATTGGTCGGAAAAGCTCTCGTGTCTTTTTTGCCTCGTCGGTTAACCATTCTAAGGG 179
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 187 AGCGATTGGTCGGAAAAGCTCTCGTGTCTTTTTTGCATCGTCGGTTAACCATTCTAAGGG 246
Query 180 AAGATATGATCCGGTAGAGAAAGCGAGAGACTCGAGGGCCGATTTGGCGTATGATTCGAA 239
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 247 AAGATATGATCCAGTAGAGAAAGCGAGAGACTCGAGGGCCGACTTGGCATATGATTCGAA 306
Query 240 GAAATGGAGAGAAGAATCCGGAGAATACGCAGAAGCAGGCAAAGAGAAAGCCCACGAGAT 299
||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||
Sbjct 307 AAAATGGAGAGAAGAATCAGGAGAATACGCAGAAGCAGGTAAAGGGAAAGCCCACAAGAC 366
Query 300 AAAAGAGGAAGCTAAAGACAAAGCTTACGATGTGAAAGAGAGAACGAAAGATTATGCTGA 359
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 367 AAAAGAGGAAGCTAAGGACAAAGCTTACGATATGAAAGAGAGAACGAAAGATTATGCTGA 426
Query 360 ACAAACTAAGGGTAAAGTGAATGAAAGAGCAAGCAGAGCCGCTGATAAAGCCTACGAAAC 419
|||||||||| ||||||||||||| ||||||||||||| |||||||||||||| || ||
Sbjct 427 ACAAACTAAGAATAAAGTGAATGAAGGAGCAAGCAGAGCAGCTGATAAAGCCTATGAGAC 486
Query 420 GAAAGAGAAGGCCAAGGACAAAGCCTATGACGTGAAAGAGAAGACAAAAGATTACGCAGA 479
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 487 GAAAGAGAAGGCCAAGGACAAAGCCTATGATGTGAAAGAGAAGACGAAAGATTACGCAGA 546
Query 480 AGAAACTAAGGATAAAGTCAATGAAGGAGCAAGTAGAGCAGCTGATAAAGCCTACGAGAC 539
||| | |||||||| || ||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 547 AGAGGCCAAGGATAAGGTGAATGAAGGAGCTAGTAGAGCTGCTGATAAAGCTTACGAGAC 606
Query 540 GAAAGAGAAGGCTAAGGACAAAGCCTATGATGTGAAAGAGAAGGCAAAAGATTACGCAGA 599
|||||||||||||| ||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 607 AAAAGAGAAGGCTAAAGACAAAGCCTATGATGTGAAAGAGAAGACAAAAGATTTTGCGGA 666
Query 600 AGAAACTAAGGATAAAGTCAAGGAAGGAGCAAGTAGAGCAGCTGATAAAGCTTACGATGT 659
|||||||||||| ||||| || |||||||| ||||||||||| ||||||||||| |||||
Sbjct 667 AGAAACTAAGGAGAAAGTGAATGAAGGAGCGAGTAGAGCAGCAGATAAAGCTTATGATGT 726
Query 660 GAAGGAGAAAACGAAGGATTATGCGGAACAAACTAAGGATAAGGTGAATGAAGGAGCGAA 719
||||||||| || ||| |||||||||||||||| || ||||| ||||||||||||||||
Sbjct 727 GAAGGAGAAGACAAAGAATTATGCGGAACAAACAAAAGATAAAGTGAATGAAGGAGCGAG 786
Query 720 TAGAGCTGCGGATAAAGCAGAAGAAACAAAAGATAAAGCCAAGGACTATGCAGAGGACTC 779
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 787 TAGAGCTGCGGATAAAGCTGAAGAGACAAAAGATAAAGCAAAGGACTATGCAGAGGACTC 846
Query 780 AAAGGAGAAAGCAGAGGATATGGCACATGGGTTTAAAGAAAAGGCTCAAGATATTGGGGA 839
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 847 AAAGGAGAAAGCAGAGGACATGGCTCATGGGTTTAAGGAAAAGGCTCAAGATATTGGGGA 906
Query 840 GAAGACTAAGGAGACTGTGAAAGATGTGTGGGAGACGGCGAAGAGCACGGCTCAGAAGGT 899
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GAAGACTATGGATACTGTGAAAGATGTGTGGGAGACGGCGAAGAGCACGGCTCAGAAGGT 966
Query 900 GACTGAGGCTGTGGTTGGGTCCGGTGAGGAGGCGGATAGGGCTAGGGATGATGTTGATAA 959
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 967 GACTGAGGCTGTGGTTGGGTCCGGTGAGGAGGCGGATAAGGCTAGGGATGATGTTGATAA 1026
Query 960 AGGCTTGGAGGATCTGTCGAAAAAGGCGAATGAAAATCGGAATAAGGATGATGATTTCAA 1019
|||||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1027 GGGCTTGGAAGATTTGTCGAAAAAGGCGAAGGAAAATCGAAATAAGGATGATGATTTCAA 1086
Query 1020 GAGGTTCTAAATTCACTAATCATCTTGT-ACTTTAATTTTCTTTTGTTGT-ATGTTTA 1075
||||||||||||| ||| |||||||||| || || || ||||||||||| || ||||
Sbjct 1087 GAGGTTCTAAATTTACTGATCATCTTGTTACCTT--TTCTCTTTTGTTGTTAT-TTTA 1141
Score = 287 bits (155), Expect = 2e-76
Identities = 222/254 (87%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 406 AAAGCCTACGAA-ACGAAAGA-GAAGGCCAAGGACAAAGCCTATGACGTGAAAGAGAAG- 462
|||||| || || || ||||| ||| || ||||||||||| || || |||||||| ||
Sbjct 353 AAAGCCCAC-AAGACAAAAGAGGAA-GCTAAGGACAAAGCTTACGATATGAAAGAG-AGA 409
Query 463 ACAAAAGATTACGCAGAAGAAACTAAGGATAAAGTCAATGAAGGAGCAAGTAGAGCAGCT 522
|| |||||||| || ||| |||||||| ||||||| |||||||||||||| |||||||||
Sbjct 410 ACGAAAGATTATGCTGAACAAACTAAGAATAAAGTGAATGAAGGAGCAAGCAGAGCAGCT 469
Query 523 GATAAAGCCTACGAGACGAAAGAGAAGGCTAAGGACAAAGCCTATGATGTGAAAGAGAAG 582
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 470 GATAAAGCCTATGAGACGAAAGAGAAGGCCAAGGACAAAGCCTATGATGTGAAAGAGAAG 529
Query 583 GCAAAAGATTACGCAGAAGAAACTAAGGATAAAGTCAAGGAAGGAGCAAGTAGAGCAGCT 642
| ||||||||||||||||| | |||||||| || || |||||||| |||||||| |||
Sbjct 530 ACGAAAGATTACGCAGAAGAGGCCAAGGATAAGGTGAATGAAGGAGCTAGTAGAGCTGCT 589
Query 643 GATAAAGCTTACGA 656
||||||||||||||
Sbjct 590 GATAAAGCTTACGA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5