BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494567
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44260.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1637 0.0
> AT5G44260.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:17829626-17831225 REVERSE LENGTH=1600
Length=1600
Score = 1637 bits (886), Expect = 0.0
Identities = 1105/1209 (91%), Gaps = 21/1209 (2%)
Strand=Plus/Plus
Query 23 TCTCTCTCTCTTCTTTTGCCACGTAGACATGGACGTCGAACATCACAAATCCGGCCACAT 82
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 TCTTTCTCTCATCTTTCGCCACGTAGACATGGACGTCGAACATCACAAATCCGGCCACAT 138
Query 83 CAGTAGACCAACGGTGGATATTCCACCGAGAAAGCTTCTTTCCTCCGCCAAGTCTCCGTC 142
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 139 CAGTAGACCAACGGTGGATATTCCACCGAGGAAGCTTCTTTCCTCCGCCAAGTCTCCGTC 198
Query 143 GTCAGTTTCAAGTCCCCTTCG-GAACTATAAAGAACAGAAAGACTATTGTTACGACTCTG 201
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 199 GTCAGTTTCAAGTCCCCTTCGCGA-CTATAAAGAACAGAAAGACTATTGTTACGACTCTG 257
Query 202 ACTCGGAAGATCCTTACGCCGGAGACCATTTTCGGATGTACGAATTCAAGATCCGACGGT 261
|||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 258 ACTCTGAGGATCCTTACGCTGGAGACCATTTCCGGATGTACGAATTCAAGATCCGACGGT 317
Query 262 GCACGCGTAGCCGTAGCCACGATTGGACCGACTGTCCTTTCTCGCATCCTGGCGAAAAGG 321
||||||||||||||||||| || |||||||||||||||||||| ||||| || |||||||
Sbjct 318 GCACGCGTAGCCGTAGCCATGACTGGACCGACTGTCCTTTCTCTCATCCCGGTGAAAAGG 377
Query 322 CTCGCCGTCGTGACCCTCGCCGGTTTCACTACACCGGCGAAGTATGTCCTGAGTTTAGCC 381
|||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 378 CTCGTCGCCGTGACCCTCGCCGGTTTCACTACACCGGAGAAGTATGCCCTGAGTTTAGCC 437
Query 382 GCCACGGCGGTGATTGTAGCCGTGGCGACGAATGCGGCTTT-GCTCACGGTGTTTTCGAG 440
| ||||| ||||||||||||||| || |||||||| ||| |||||||| |||||||||
Sbjct 438 GTCACGG---TGATTGTAGCCGTGGTGATGAATGCGG-TTTCGCTCACGGGGTTTTCGAG 493
Query 441 TGTTGGCTCCACCCGAGTCGTTATCGTACGGAAGCTTGTAAAGACGGTAAGCATTGTAAG 500
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 494 TGTTGGCTTCATCCGAGTCGTTACCGTACGGAAGCTTGTAAAGACGGTAAGCATTGTAAG 553
Query 501 AGGAAGGTCTGTTTCTTTGCTCACTCTCCACGTCAGCTGAGAGTTCTTCCACCGTCGCCG 560
||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 554 AGGAAAGTTTGTTTCTTTGCTCATTCTCCACGTCAGCTGAGAGTTCTTCCACCGTCCCCG 613
Query 561 GAGAATCTTGTTTCCGGT--T-GCGGTGGATCACCGTTGTCATCGCCGGCGTCCGTGTTA 617
||||||| | |||||||| | ||||||||||||||| |||||| || || || || |||
Sbjct 614 GAGAATCATATTTCCGGTGGTTGCGGTGGATCACCGTCGTCATCCCCTGCATCGGTTTTA 673
Query 618 AGTATTAAAAATAATCGGTGCTGCTTGTTTTGTTCCCACTCTCCGACGAGCACTCTCTTG 677
|| | |||||||||||| || ||||||||||||||||| ||||||||||| |||||||||
Sbjct 674 AGCAATAAAAATAATCGATGTTGCTTGTTTTGTTCCCATTCTCCGACGAGTACTCTCTTG 733
Query 678 GGTTTATCAATATCACCGTCGTCATCTCCGCCTTTGTCTCCGGCTGATAAAGCCGCTGCA 737
||||||| |||||| || || ||||||||||||||||| ||||||||||||| ||||
Sbjct 734 AATTTATCACGATCACCTTCATCGTCTCCGCCTTTGTCTCCAGCTGATAAAGCCGATGCA 793
Query 738 TTTTCACGGCTGAGCCGCCGTCGCACGGCCGTACTTAACGAACTGATTAGTTCTTTAGAT 797
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 794 TTTTCACGGCTGAGCCGCCGTCGCACCGCCGTACTAAACGAACTGATTAGTTCTTTAGAT 853
Query 798 TCCTTTAGTCTCACGGAAGCACTCGCGGCCTCTTCCTCGTCTCCCGTTACCATGCCTACT 857
||||| ||||||||||||||||| || || ||||| |||||||||||||||||||| | |
Sbjct 854 TCCTTAAGTCTCACGGAAGCACTTGCAGCTTCTTCATCGTCTCCCGTTACCATGCCCATT 913
Query 858 TCCACGGCGGCGATGATCGCTTCATCCAATCTAAGCA--A-CCACCTCCACCACCGTCTT 914
||||||||| |||||||||||||||| |||||||||| | ||||| |||||||||||||
Sbjct 914 TCCACGGCGACGATGATCGCTTCATCGAATCTAAGCAGCAACCACCACCACCACCGTCTT 973
Query 915 CCACCGTGGCTTGATGTCGGAGACAGAGATCTCCAAATACAACAGAGTAGTCCTCCACAA 974
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 974 CCGCCGTGGCTTGATGTCGGAGACAGAGATCTCCAATTACAACAGAGTAGTCCTCTACGA 1033
Query 975 TTTGCTCTTTC-CCTTTCTTCTACTCCAAGTTACCTCCATGGCCAGCTTCAACCGCCGCC 1033
||||||||||| |||| |||| ||||||||||||||||||||||||||||| || || ||
Sbjct 1034 TTTGCTCTTTCACCTT-CTTCAACTCCAAGTTACCTCCATGGCCAGCTTCAGCCACCACC 1092
Query 1034 GTCGAGCTTCTTTAGCGATGAATTCACACCACGCGGTGGCCGGTTAAGCGATTTCACGGC 1093
||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 1093 GTCGAGCTTCTTTGGCGATGAATTCACACCACGTGGTGGCCGGCTAAGCGATTTCTCGGT 1152
Query 1094 GGCTGCAGCTGCAGCTGCGGCGGCCAAAGCTAGGGATAAGAATAGCTTTGAAGTCGGTTC 1153
|||||||||||| | ||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 1153 GGCTGCAGCTGC-G--GCGGC--CCAA-GCTAGGGATAAAAATAGCTTTGAAGTCGGTTC 1206
Query 1154 TAGTGGCGATCTTGATCTCGGATGGGTGAACGATCTCTTGACATGAACAATGTGACGTCA 1213
|||||||||||||||||| ||||||||||||||||| |||||||||||| | |||| |||
Sbjct 1207 TAGTGGCGATCTTGATCTAGGATGGGTGAACGATCTTTTGACATGAACAGTATGACATCA 1266
Query 1214 ACGGTGAAC 1222
|| ||||||
Sbjct 1267 ACTGTGAAC 1275
Score = 171 bits (92), Expect = 2e-41
Identities = 121/133 (91%), Gaps = 9/133 (7%)
Strand=Plus/Plus
Query 1306 TTTTTGTTAAAT-A-AGAGTCTATAACTTCTATTGTTATAATATTGATCTCTTGGAACTT 1363
|||||||||||| | |||||| ||||||||||||| | | ||||||||||||||||||||
Sbjct 1438 TTTTTGTTAAATAAGAGAGTCCATAACTTCTATTG-T-T-ATATTGATCTCTTGGAACTT 1494
Query 1364 GTAATAAGT-TACTATCCTTGTGATCGAATTCCTATGTAATGTTTACTTCAAAATATTCT 1422
||||| | | ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GTAAT-A-TCTACTA-CATTGTGATCGAATTCCTATGTAATGTTTACTTCAAAATATTCT 1551
Query 1423 GTTTAATAAAAAA 1435
|||||||| ||||
Sbjct 1552 GTTTAATAGAAAA 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5