BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494572
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44210.1 | Symbols: ERF9, ATERF9, ATERF-9 | erf domain prote... 985 0.0
> AT5G44210.1 | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein
9 | chr5:17806472-17807534 FORWARD LENGTH=1063
Length=1063
Score = 985 bits (533), Expect = 0.0
Identities = 719/803 (90%), Gaps = 36/803 (4%)
Strand=Plus/Plus
Query 1 ATGGCTCCAAAACGA-GTGAATGGTACTAA-CACCGCTGTGAGTGAAGGCGGCGGAAGG- 57
|||||||||| || | | ||| |||| || || || |||||||||||||||||| ||
Sbjct 271 ATGGCTCCAAGAC-AGGCGAACGGTA-GAAGCATTGCCGTGAGTGAAGGCGGCGGAGGGA 328
Query 58 A-A-GATGACG--G-CGACGATGAGGAAGGAAGTGCACTTTAGAGGTGTGAGGAAGCGTC 112
| | ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 329 AGACGATGACGATGACGACGATGCGGAAGGAAGTGCACTTTAGAGGTGTGAGGAAGCGTC 388
Query 113 CATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGAGTTTGGCTCG 172
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 389 CATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGGGTTTGGCTCG 448
Query 173 GGACATTTGACACGGCGGAGGAAGCTGCTAGGGCTTACGACACTGCCGCGAGAGAGTTTC 232
||||||| |||||||||||||||||||| || ||||||||||| ||||| ||||||||||
Sbjct 449 GGACATTCGACACGGCGGAGGAAGCTGCAAGAGCTTACGACACCGCCGCTAGAGAGTTTC 508
Query 233 GTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGCGAGACTACTGCCGTCAGCGACG 292
||||||||||||||||||||||||||||||||||||| ||| ||||| | || | |||||
Sbjct 509 GTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGAGAGTCTACTACGGTTAACGACG 568
Query 293 GTGCCGGAGGTAACGATTCTTACGTCAACCGTTCGCCGGTGACGGCGGCGAGTGAGATGA 352
||| | || | ||||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct 569 GTGGC-GA-G-AACGATTCTTACGTCAACCGTACGACGGTGACGACGGCGCGTGAGATGA 625
Query 353 CGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCGTCGGTGGTTATGCTG 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 CGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCGTCGGTGGTTATGCTT 685
Query 413 CTGCCGGTTTTTTCTTCGATCCGTCAAGAGCTGCTGCGTTAAGAGCGGAGCTTTCTCGGG 472
|||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 686 CTGCTGGTTTTTTCTTCGATCCGTCAAGAGCTGCTTCGTTAAGAGCAGAGCTTTCTCGGG 745
Query 473 TTTATCCGGTTCGGTTTGATCCGGTTAATATCGAGTTGAGTATTGGTATTCGAGAAACCG 532
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TTTGTCCGGTTCGGTTTGATCCGGTTAATATCGAGTTGAGTATTGGTATTCGAGAAACCG 805
Query 533 TAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGG 865
Query 593 ACGTTTAGAtttttttctt-tttt--t--ttt--A-----CATTGCCGGAAAAATATTTA 640
||||||||||||||||||| |||| | ||| | ||||||||||||| || |||
Sbjct 866 ACGTTTAGATTTTTTTCTTCTTTTCATAATTTGTATTTTACATTGCCGGAAAA-TAATTA 924
Query 641 ATGttttttttAGTAGATGAGAAAAAAGGAAAATCTCCTATATTATTGGCTATGTAATAG 700
||||||| |||||||||||||||||| | |||||||||||| || ||||||| |||| ||
Sbjct 925 ATGTTTTCTTTAGTAGATGAGAAAAA-GAAAAATCTCCTATGTTTTTGGCTAAGTAAGAG 983
Query 701 AAATCTCTTGTTTAATTAGTTTCCATATGGTTCCTCTA-T---GTAGATGTAATTAGT-A 755
||| | || ||| | | | ||| ||||||||| ||| | || |||||||||| | |
Sbjct 984 GAATTT-TT-TTTCAGAAATCTCC-TATGGTTCC-CTAATTACGTGGATGTAATTAATTA 1039
Query 756 TTAATCAAATATCTCCTTTTGAT 778
||||||||||||||||||||||
Sbjct 1040 CTAATCAAATATCTCCTTTTGAT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5