BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494573
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 ... 1363 0.0
> AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20
| chr5:17801814-17804065 REVERSE LENGTH=1212
Length=1212
Score = 1363 bits (738), Expect = 0.0
Identities = 858/913 (94%), Gaps = 20/913 (2%)
Strand=Plus/Plus
Query 121 ATTCACTTCTTTTCACCGTGAAGCGATGGCTTCTTTGTTCAAGGAGCAAGCAAAGCTCTC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 166 ATTCACTTCTTCTCACCGTGAAGCGATGGCTTCTTTGTTCAAGGAGCAAGCAAAGCTATC 225
Query 181 GGCTTATCGAGACAGAAGATTTTCTGGAACACAAGAGGAGTTCGATGAGGCGCTAAGAGC 240
|||||||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 226 AGCTTATCGTGATAGAAGATTTTCAGGAACACAAGAGGAGTTTGATGAAGCGCTAAGAGC 285
Query 241 ATCTACAACGGTTTACATTGGCAATGTGTCTTTCTACACTACTGAAGAACAGCTTTACGA 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 286 ATCTACAACGGTTTACATTGGCAATGTGTCTTTTTACACTACTGAAGAACAGCTTTACGA 345
Query 301 GCTTTTCTCTAGAGCAGGAGAAATCAAAAAGATCATCATGGGATTGGATAAGAACACTAA 360
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 346 GCTTTTCTCTAGAGCTGGAGAAATCAAAAAGATCATCATGGGTTTGGATAAGAACACTAA 405
Query 361 AACACCTTGTGGCTTTTGTTTCGTCCTTTTCTACTCGAGAGAGGATACTGAGGATGCAGT 420
||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 406 AACACCTTGTGGCTTTTGTTTCGTCCTGTTCTACTCTAGAGAGGATACTGAAGATGCAGT 465
Query 421 CAAGTATATAAGTGGGACTATTCTGGATGATCGGCCTATTCGTGTGGATTTTGATTGGGG 480
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 466 CAAGTATATAAGTGGGACTATTCTCGATGACCGGCCTATTCGTGTGGATTTTGATTGGGG 525
Query 481 GTTCCAAGAAGGAAGACAATGGGGACGTGGTAGAAGCGGTGGTCAGGTTCGAGATGAATA 540
||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 526 ATTCCAAGAAGGAAGACAATGGGGCCGTGGTAGAAGCGGTGGCCAGGTTCGTGATGAATA 585
Query 541 CCGTACAGATTACGATCCTGCTAGAGGTGGTTAT-GGAAAGTTAGTTCAGAAGGAACTTG 599
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 586 CCGTACAGATTACGATCCTGCTAGAGGTGGTTATGGGAAA-TTAGTTCAGAAGGAACTCG 644
Query 600 AAGCACAAAGGCAGCTCGTGGATTACGGTACTGGCTCATTGGGAGCCTATCCTCAAGCTG 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 645 AAGCACAAAGGCAGCTCGTGGATTACGGTACTGGCTCATTGGGAGCTTATCCTCAAGCTG 704
Query 660 CGCCATCGAATTATGGAAATGGAAGGCGTGGTGGTGGAAACTATGCTCAAGGAGGACCAA 719
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 705 CGCCAACGAATTATGGAAATGGAAGGCGTGGTGGTGGAAACTATGGTCAAGGAGGACAAA 764
Query 720 ATCGCCATGGAAGAGGAGACTACCATCGGAAACGTCAAAGAGACGACGATCGCTATGGCC 779
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 765 ATCGCCATGGAAGAGGAGACTACCATCGGAAACGACAAAGAGACGATGATCGCTATGGCC 824
Query 780 GTGATAACTCAAGAAGAAACACAGATCATGAGTCTAGGAGAGACACTGATCA-TGACATG 838
| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 825 GCGATAACTCAAGAAGAAACACAGATCATGAGTCTAGGAGAGACACTGAT-AGTGACATG 883
Query 839 AGACCGGAGAAGAACCCACGATTCCGTGAAAGCGGTGACTCCGACGATGATGGTGAAGAT 898
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 884 AGACCGGAGAAGAACCCACGATTCCGTGAGAGCGGTGACTCCGATGACGATGGTGAAGAT 943
Query 899 GATCGGAAGAGAAGATCTTAAAACAAA-C---A-ATGTT--C--T-T-G---AA-GGATC 943
||||||||||||||||||||||||||| | | | ||| | | | | || || ||
Sbjct 944 GATCGGAAGAGAAGATCTTAAAACAAAACTTTAGAAGTTGTCAATGTTGCTGAATGG-TC 1002
Query 944 AATGTAATCTTTAGACTGATGAGTATGAACTCAGTTTGGGTTTTCTAGATTTTCATTACA 1003
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1003 AATGTAATCTTTAGATTGATGAGTCTGAACTCAGTTTGGGTTTTCTAGATTTTCATTACA 1062
Query 1004 AACTTTCTTAAGT 1016
| |||||||||||
Sbjct 1063 ACCTTTCTTAAGT 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5