BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494575
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44190.1 | Symbols: GLK2, ATGLK2, GPRI2 | GOLDEN2-like 2 | c... 2069 0.0
> AT5G44190.1 | Symbols: GLK2, ATGLK2, GPRI2 | GOLDEN2-like 2 |
chr5:17798369-17800824 FORWARD LENGTH=1404
Length=1404
Score = 2069 bits (1120), Expect = 0.0
Identities = 1304/1390 (94%), Gaps = 24/1390 (2%)
Strand=Plus/Plus
Query 1 GTATCATTCTTGTTTTCTCTAAATTTTTC---AAATCTTTAGAATTTTCAAGTTTTT--- 54
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 1 GTATCATTCTTGTTTTCTCTAAATTTTTCAAAAAACCTTTAGAATTTTCATTTTTTTACG 60
Query 55 A-T-AAATGTTAACTGTTTCTCCGGCTCC---ACTCATCGGAAACAACTCGAAGGATACT 109
| | ||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 61 ATTCCGATGTTAACTGTTTCTCCGGCTCCAGTACTCATCGGAAACAACTCAAAGGATACT 120
Query 110 TACATGGCGGCAGATTTCGCAGATTTTACGACGGAAGGCTTGCCGGACTTTACGACGGTC 169
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TACATGGCGGCAGATTTCGCAGATTTTACGACGGAAGACTTGCCGGACTTTACGACGGTC 180
Query 170 GGAGATTTCTCCGATGATCTTCTTGATGGAATCGATTACTACGACGATCTTTTCATTGGT 229
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGGATTTTTCCGATGATCTTCTTGATGGAATCGATTACTACGACGATCTTTTCATTGGT 240
Query 230 TTCGATGGAGACGATGTTTTGCCGGATTTGGAGATTGATACGGAGATTCTTGGGGAATAT 289
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 241 TTCGATGGAGACGATGTTTTGCCGGATTTGGAGATAGATTCGGAGATTCTTGGGGAATAT 300
Query 290 TCCGGTAGCGGAAGAGATGAGGAACAAGAAATGGAGGGTAACACTTCGACGGCGTCGGAG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 TCCGGTAGCGGAAGAGATGAGGAACAAGAAATGGAGGGTAACACTTCGACGGCATCGGAG 360
Query 350 ACGTCGGAGAGAGACGGTGGTCATGGGTGTAAGCAAGAGGGTGGCGGTGGTGGTGACGGT 409
|| ||||||||||||| ||| || |||||||||||||||||| |||||||||||||||
Sbjct 361 ACATCGGAGAGAGACGTTGG---TGTGTGTAAGCAAGAGGGTGGTGGTGGTGGTGACGGT 417
Query 410 GGTGTTAGGGACAAAACGGTGCGTAGAGGCAAACGTAAAGGGAAGAAAAATAAAGATTGT 469
||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 418 GGTTTTAGGGACAAAACGGTGCGTCGAGGCAAACGTAAAGGGAAGAAAAGTAAAGATTGT 477
Query 470 TTATCCGATGATAACGATATTAAGAAAAAACCCAAGGTGGATTGGACGCCGGAGTTACAC 529
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TTATCCGATGAGAACGATATTAAGAAAAAACCTAAGGTGGATTGGACGCCGGAGTTACAC 537
Query 530 CGGAAATTTGTACAAGCGGTGGAGCAATTAGGGGTAGACAAGGCGGTGCCGTCACGGATT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 538 CGGAAATTTGTACAAGCGGTGGAGCAATTAGGGGTAGACAAGGCGGTGCCGTCTCGAATC 597
Query 590 TTGGAAATTATGAACGTTAAATCTCTCACTCGTCACAACGTTGCTAGCCATCTTCAGAAA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTGGAAATTATGAACGTTAAATCTCTCACTCGTCACAACGTTGCTAGCCATCTTCAGAAA 657
Query 650 TATAGATCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCTC 709
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCTC 717
Query 710 CGGCGACATGCGACGGTGGCAGTGGCCGGAGTAGGAGGAGGTGGGAAGAAGCCATGGACG 769
||| ||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 718 CGGAGACATGCCACGGTGGCAGTGCCCGGAGTAGGAGGAGGAGGGAAGAAGCCGTGGACA 777
Query 770 GCTCCTGCCTTAGGCTATCCACCACACGTGGCACCAATGCATCATGGCCACTTCAGGCCT 829
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 778 GCTCCTGCCTTAGGCTATCCTCCACACGTGGCACCAATGCATCATGGTCACTTCAGGCCT 837
Query 830 TTGCACGTGTGGGGTCATCCTACGTGGCCTAAACACAAGCCTAATACTCCTGCGTCTGCT 889
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 838 TTGCACGTATGGGGTCATCCTACGTGGCCAAAACACAAGCCTAATACTCCGGCGTCTGCT 897
Query 890 CATCGGACGTATCCGATTCC-GTTAGTTGCGGCGGCTCCGGCATCTTGGCCAGGTCATCC 948
|||||||||||||| || || | | ||||||||||||||||||||||||||||||||||
Sbjct 898 CATCGGACGTATCCAATGCCGGCCA-TTGCGGCGGCTCCGGCATCTTGGCCAGGTCATCC 956
Query 949 GCCGTACTGGCACCAACAACCACTATATCCACAGGGATATGGTATCGCATCATCGAATCA 1008
||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 957 ACCGTACTGGCATCAGCAACCACTCTATCCACAGGGATATGGTATGGCATCATCGAATCA 1016
Query 1009 TTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCA 1076
Query 1069 TCCCTCGAATGAGAGCATAGACGCGGCTATTGGAGAAGTGATAACAAAGCCGTGGCTGCC 1128
||||||||||||||||||||| || |||||||| || || ||| ||||||||||||||||
Sbjct 1077 TCCCTCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATATCAAAGCCGTGGCTGCC 1136
Query 1129 GCTTCCTTTGGGACTGAAACCGCCGTCAGTTGATGGTGTCATGACGGAGTTACAACATCA 1188
||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||
Sbjct 1137 GCTTCCTTTGGGACTGAAACCGCCGTCGGTTGACGGTGTTATGACGGAGTTACAACGTCA 1196
Query 1189 AGGAGTTTCTAATGTTCCTCCTCTTCCTTGAGaaaaaaaaTCTCCAAAATTTGCCGAAAT 1248
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct 1197 AGGAGTTTCTAATGTTCCTCCTCTTCCTTGAGAAAGA---TCTCCAAAATTTGTCGAAAT 1253
Query 1249 CTCGAT-TTTTAACTTCAttttttttGGTATCTTCTAAGTATTTTTGCA-GGGAAAAATA 1306
||| | |||||||||||||||||| ||||||||||| ||||||||||| |||||| |
Sbjct 1254 CTCAAACTTTTAACTTCATTTTTTT-GGTATCTTCTATGTATTTTTGCAAGGGAAAGA-- 1310
Query 1307 CTATAAATCCTTGTTGCTTGATCATATGTATTTCTCTATATGAGTGCATGTATCGAAGTT 1366
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CGATAAATCCTTGTTGCTTGATCATATGTATTTCTCTATATGAGTGCATGTATCGAAGTT 1370
Query 1367 AAGCAACTTT 1376
||||||||||
Sbjct 1371 AAGCAACTTT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5