BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494579
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44130.1 | Symbols: FLA13 | FASCICLIN-like arabinogalactan p... 1321 0.0
AT1G03870.1 | Symbols: FLA9 | FASCICLIN-like arabinoogalactan 9... 481 6e-135
> AT5G44130.1 | Symbols: FLA13 | FASCICLIN-like arabinogalactan
protein 13 precursor | chr5:17761090-17762003 FORWARD LENGTH=914
Length=914
Score = 1321 bits (715), Expect = 0.0
Identities = 840/901 (93%), Gaps = 6/901 (1%)
Strand=Plus/Plus
Query 1 ACACA-AAA-TCAACTTCAAAACTCAATGGCCACCACTCCTCTCTTCCTCCTTCTCCTCA 58
||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 13 ACACATAAACTCATCTTCAAAACTCAATGGCCACCACTCCTCTCCTCCTCCTTCTCCTCA 72
Query 59 CCGCCGTCTTCCTCTCCGCGGAGATAACCGCTCAACCCGCTGCTCCGGCTCCTGGCCCTG 118
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 73 CCGCCGTCTTCCTCTCCACGGAGATAACCGCTCAACGCGCTGCTCCGGCTCCTGGCCCGG 132
Query 119 CTGGTCCCATCAACATCACGGCAATCCTCGAAAAAGGTGGTCAATTTGTTACTCTTATCC 178
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 133 CTGGTCCCATCAACATCACGGCAATCCTCGAAAAAGGCGGACAATTTGTTACTCTTATCC 192
Query 179 GACTTTTAAACACAACTCAAATCGGAAACCAAATCAACATCCAAATCAACAGTTCATCGG 238
| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |
Sbjct 193 GTCTTTTAAACACAACTCAAATAGGAAACCAGATAAACATCCAAATCAACAGTTCATCAG 252
Query 239 AAGGCATGACCGTGTTGGCACCAACAGACAATGCTTTTCAAAACCTTAAACCCGGAACAC 298
|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 253 AAGGCATGACCGTGTTAGCACCAACAGACAACGCTTTCCAAAACCTTAAACCCGGAACCC 312
Query 299 TAAACAAATTGAGCCCGGAAGACCAAGTCAAACTCATTCTTTACCATGTTAGTCCAAAAT 358
|||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 313 TAAACAAACTAAGCCCGGACGACCAAGTCAAACTCATTCTTTACCATGTCAGTCCCAAAT 372
Query 359 TCTACACATTGGAAGATCTCCTGTCGGTTAGTAACCCGGTCAGCACTCAAGCTTCAGGTC 418
||||||||||||||||||| || || || |||||||||||||| ||||| ||||||||||
Sbjct 373 TCTACACATTGGAAGATCTTCTCTCTGTAAGTAACCCGGTCAGAACTCAGGCTTCAGGTC 432
Query 419 GAGACGCTGGTGGGGTTTACGGACTTAACTTCACCGGTCAAGGGAACCAAGTCAATGTAT 478
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 433 GAGACGTTGGTGGGGTTTACGGACTTAACTTCACCGGTCAAGGGAATCAAGTCAATGTAT 492
Query 479 CTACCGGTATCGTTGAGACACGTCTCAGTACTTCATTAAGACAAGAACGTCCTCTTGCGG 538
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 493 CTACTGGTGTCGTTGAGACACGTCTCAGTACTTCATTGAGACAAGAACGTCCTCTTGCGG 552
Query 539 TTTACGTGGTGGACATGGTATTGTTACCGGAAGAGATGTTCGGGGAACGCAAGATCTCAC 598
||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct 553 TTTACGTGGTGGACATGGTATTGTTGCCGGAAGAGATGTTTGGAGAACGTAAGATCTCAC 612
Query 599 C-AGTGGCGCCTCCTCCTAAATCTAAATCTCCTGATGTCTCCGATGATTCAGACTCCTCT 657
| | |||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 613 CGA-TGGCGCCTCCACCAAAATCAAAATCTCCTGATGTCTCAGATGATTCAGAGTCCTCT 671
Query 658 AAGAAAGCGGCTGCTCCGTCACAGTCAGAGAAGTCTGGCTCCGGTGAGGTGAATTCTGGA 717
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 672 AAGAAAGCGGCTGCTCCGTCAGAGTCAGAGAAGTCTGGCTCCGGTGAGATGAATACTGGA 731
Query 718 TTCGGGTTTGGTCTTGGACTTGTTGTGTTGTGTTTGAAATTCCTCTTTTGAGTTTGTTTC 777
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 732 TTAGGGCTTGGTCTTGGACTTGTTGTGTTGTGTTTGAAATTCCTCCTTTGAGTTTGTTTA 791
Query 778 TATATATTGATTTAATTGTGCGGTTTGTAATAATAAATTTCTTTATATGTTGAATATGAT 837
||||||||||||||||||||||| ||||||||| |||||||| ||||||| | ||||||
Sbjct 792 TATATATTGATTTAATTGTGCGGGTTGTAATAAGAAATTTCT--ATATGTTTATTATGAT 849
Query 838 GCATGATTCGAAAAGTGAAATAAGAGATTATTATTTCGTGTGCATATATATGTATTTCCT 897
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 850 GCATGATTTGAAAACTGAAATAAGAGATTATTATTTCGTGTGCATATATATGTATTTTCT 909
Query 898 G 898
|
Sbjct 910 G 910
> AT1G03870.1 | Symbols: FLA9 | FASCICLIN-like arabinoogalactan
9 | chr1:982506-983540 REVERSE LENGTH=1035
Length=1035
Score = 481 bits (260), Expect = 6e-135
Identities = 559/699 (80%), Gaps = 37/699 (5%)
Strand=Plus/Plus
Query 84 AACCGCTCAACCCGCTGCTCCGGCTCCTG-GCCCTGCTGGTCCCATCAACATCACGGCAA 142
||| ||||| || || || || ||||| | | |||||||||||||||||| |||| || |
Sbjct 241 AACGGCTCAGCCGGCAGCCCCCGCTCCAGAG-CCTGCTGGTCCCATCAACCTCACTGCGA 299
Query 143 TCCTCGAAAAAGGTGGTCAATTTGTTACTCTT-ATCCGA-CTTTTAAACA-CAACTCAAA 199
|||||||||||||||||||||| |||| || |||| | ||| |||||| | ||||||
Sbjct 300 TCCTCGAAAAAGGTGGTCAATTCACTACT-TTCATCC-ATCTTCTAAACATC-ACTCAAG 356
Query 200 TCGGAAACCAAATCAACATCCAAATCAACAGTTCATCGGAAGGCATGACCGTGTTGGCAC 259
|||| | ||| | ||||| ||| |||| |||||||| ||||| ||||| ||||| ||||
Sbjct 357 TCGGTAGTCAAGTGAACATTCAAGTCAATAGTTCATCCGAAGGTATGACGGTGTTCGCAC 416
Query 260 CAACAGACAATGCTTTTCAAAACCTTAAACCCGGAACACTAAACAAATTGAGCCCGGAAG 319
||||||||||||||||||||||||||||||||||||| |||||| | || ||||| || |
Sbjct 417 CAACAGACAATGCTTTTCAAAACCTTAAACCCGGAACCCTAAACCAGTTAAGCCCTGACG 476
Query 320 ACCAAGTCAAACTCATTCTTTACCATGTTAGTCCAAAAT-TCTACAC-ATTGGAAGATCT 377
| ||||| ||||||||||| ||||| ||||| || |||| | |||| || ||| |||||
Sbjct 477 ATCAAGTTAAACTCATTCTCTACCACGTTAGCCCCAAATAT-TACAGTAT-GGATGATCT 534
Query 378 CCTGTCGGTTAGTAACCCGGTCAGCACTCAAGCTTCAGGTCGAGACG-CTGGTGGGGTTT 436
||| || || ||||||||||| || ||||||||||| || |||||| | |||| |||
Sbjct 535 CCTCTCCGTGAGTAACCCGGTTAGGACTCAAGCTTCTGGCCGAGACAAC-GGTG---TTT 590
Query 437 ACGGACTTAACTTCACCGGTCAAGGGAACCAAGTCAATGTATCTACCGGT-ATCGTTGAG 495
|||| |||||||||||||| ||| |||||| ||||||| ||||| ||| || || |||
Sbjct 591 ACGGGCTTAACTTCACCGGCCAAACAAACCAAATCAATGTCTCTACTGGTTAT-GTGGAG 649
Query 496 ACACGTCTCAGTACTTCATTAAGACAAGAACGTCCTCTTGCGGTTTACGTGGTGGACATG 555
|||||| | || | ||| || || ||| |||||||||| || ||||| || || ||||||
Sbjct 650 ACACGTATTAGCAATTCGTTGAGGCAACAACGTCCTCTCGCAGTTTATGTTGTCGACATG 709
Query 556 GTATTGTTACC-GGAAGAGATGTTCGGGGAACGCAAGATCTCACC-AGTGGCGCCT-CCT 612
|| ||||| || || ||||||||||| || | |||| | || || | || | ||| ||
Sbjct 710 GTTTTGTTGCCCGGT-GAGATGTTCGGAGAGCACAAGCTTTCGCCGATTG-CTCCTGCC- 766
Query 613 CCTAAATCTAAATCTCC-TGATGTCT-CCGATGATTCAGACTCCTCTAAGAAAGCGGCTG 670
|||||||||||||| | || || | ||||||| || | |||| ||||||| | | | |
Sbjct 767 CCTAAATCTAAATC-CGGTGGGGT-TACCGATGACTCCGGCTCCACTAAGAA-G-G-CAG 821
Query 671 CTCCGTCACAGTCAGAGAAGTCTGGCTCCGGTGAGGTGAAT-TCTGGATTCGGGTTTGGT 729
| ||||| ||| || ||||| |||||||||||| ||| || ||| | |||||||||
Sbjct 822 C---GTCACCGTCGGATAAGTCAGGCTCCGGTGAGAAGAAAGTC-GGACTAGGGTTTGGT 877
Query 730 CTTGGACTTGTTGTGTTGTGTTTGAAATTCCTCTTTTGA 768
||||||||| |||| || ||||||||||| |||||||||
Sbjct 878 CTTGGACTTATTGTCTTATGTTTGAAATTTCTCTTTTGA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5