BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494580
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44120.3 | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins su... 2577 0.0
> AT5G44120.3 | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins
superfamily protein | chr5:17756264-17758288 REVERSE LENGTH=1657
Length=1657
Score = 2577 bits (1395), Expect = 0.0
Identities = 1542/1612 (96%), Gaps = 14/1612 (1%)
Strand=Plus/Plus
Query 1 AGTGAGAAACCACAAAAAGTAAGAAAGATATAAGAAATAACAAAATGGCTCGAGtctctt 60
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 AGTGAGAAACCACAAAAAGTAAG-AA-ATATAAGAAATAACAAAATGGCTCGAGTCTCTT 58
Query 61 ctcttctttctttctccttaacacttttgatctttttcGATGGCTACGCGGCTCAACAGG 120
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 59 CTCTTCTTTCTTTCTGCTTAACACTTTTGATCCTTTTCCATGGCTACGCGGCTCAACAGG 118
Query 121 GTCAGGAGGGTCAGCAGTTTCCAAACGAGTGCCAGCTCGACCAGCTCAATGCGCTCGAGC 180
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 119 GTCAGCAGGGTCAGCAGTTTCCGAACGAGTGCCAGCTCGACCAGCTCAATGCGCTCGAGC 178
Query 181 CGTCACACGTACTGAAGAGCGAGGCTGGTCGCATCGAGGTGTGGGACCACCACGCTCCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGTCACACGTACTGAAGAGCGAGGCTGGTCGCATCGAGGTGTGGGACCACCACGCTCCTC 238
Query 241 AGCTCCGTTGCTCAGGCGTCTCCTTTGCACGATACATCATCGAGTCTAAGGGTCTCTACT 300
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 AGCTCCGTTGCTCAGGTGTCTCCTTTGCACGTTACATCATCGAGTCTAAGGGTCTCTACT 298
Query 301 TGCCCTCTTTCTTCAACACCGCCAAGCTCTCTTTCGTGGCTAAAGGACGAGGTCTTATGG 360
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 299 TGCCCTCTTTCTTTAACACCGCGAAGCTCTCTTTCGTGGCTAAGGGACGAGGTCTTATGG 358
Query 361 GAAAAGTGATCCCTGGATGCGCCGAGACATTCCAAGACTCATCAGAGTTCCAACCACGCT 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 GAAAAGTGATCCCTGGATGCGCCGAAACATTCCAAGACTCATCAGAGTTCCAACCACGCT 418
Query 421 TCGAAGGTCAAGGTGAAAGGCAAAGGTTCCGTGACATGCACCAGAAAGTGGAGCACATAA 480
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 419 TCGAAGGTCAAGGTCAAAGCCAGAGGTTCCGTGACATGCACCAGAAAGTGGAGCACATTA 478
Query 481 GGAGCGGTGACACCATTGCCACAACACCCGGTGTAGCACAGTGGTTCTACAATGACGGAC 540
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 GGAGCGGTGATACCATTGCCACAACACCCGGTGTAGCACAGTGGTTCTACAACGACGGAC 538
Query 541 AGCAACCACTTGTCATCGTTAGCGTCTTCGATCTAGCCAGTCACCAGAACCAGCTTGACC 600
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGGAACCACTTGTCATCGTCAGCGTCTTCGATCTAGCCAGTCACCAGAACCAGCTTGACC 598
Query 601 GCAACCCAAGGCCATTTTACTTAGCCGGAAACAACCCACAAGGCCAAGTATGGCTACAAG 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 GCAACCCAAGGCCATTTTACTTAGCCGGAAACAACCCACAAGGTCAAGTATGGCTACAAG 658
Query 661 GACGAGAGCAACAGCCACAAAAGAACATTTTCAATGGATTCGGACCCGAGGTTATTGCTC 720
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 659 GACGAGAGCAACAGCCACAGAAGAACATTTTCAATGGATTTGGACCCGAGGTTATTGCTC 718
Query 721 AAGCTTTGAAGATCGATCTTAAGACAGCGCAAAAACTTCAGAACCAAGAAGACAACCGTG 780
|||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||
Sbjct 719 AAGCTTTGAAGATCGATCTTCAGACAGCACAGCAACTTCAGAACCAAGATGACAACCGTG 778
Query 781 GAAACATTGTCCGAGTCGAAGGCCCTTTCGGTGTCATTAGGCCACCTTTGAGGGGCCAGA 840
||||||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 779 GAAACATTGTCCGAGTCCAAGGACCGTTCGGTGTCATTAGGCCGCCTTTGAGGGGCCAGA 838
Query 841 GACCTCAGGAGGAGGA-GAAAGAAGAAGGACGACACGGACGACACGGTAATGGCTTAGAG 899
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 839 GACCTCAGGAGGAGGAAGAA-GAAGAAGGACGACATGGACGACACGGTAATGGCTTAGAG 897
Query 900 GAGACCATCTGCAGCGCCAGGTCCACTGATAACCTCGATGACCCGTCTCGTGCTGACGTG 959
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 898 GAGACCATCTGCAGCGCCAGGTGCACCGATAACCTCGATGACCCGTCTCGTGCTGACGTG 957
Query 960 TACAAGCCACAGCTTGGTTACATCAGCACTCTCAACAGTTACGATCTCCCCATCCTTCGC 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TACAAGCCACAGCTCGGTTACATCAGCACTCTCAACAGTTACGATCTCCCCATCCTTCGC 1017
Query 1020 TTCATCCGTCTCTCAGCCCTCCGTGGATCCATCCGTCAAAACGCAATGGTGCTTCCACAG 1079
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 TTCATCCGTCTCTCAGCCCTCCGTGGATCTATCCGTCAAAACGCAATGGTGCTTCCACAG 1077
Query 1080 TGGAACGCAAACGCGAACGCTATTCTTTACGTGACAGACGGGGAAGCCCAAATCCAGATC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGGAACGCAAACGCGAACGCTATTCTTTACGTGACAGACGGGGAAGCCCAAATCCAGATC 1137
Query 1140 GTAAACGACAACGGTAACAGAGTGTTTGACGGACAAGTCACTCAAGGACAGCTAATTGCC 1199
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 1138 GTAAACGACAATGGTAACAGAGTGTTTGACGGACAAGTCTCTCAAGGACAGCTCATAGCC 1197
Query 1200 ATACCACAAGGTTTCTCGGTGGTGAAACGCGCAACAAGTAACCGATTCCAGTGGGTTGAG 1259
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 GTACCACAAGGTTTCTCGGTGGTGAAACGCGCAACAAGCAACCGATTCCAGTGGGTTGAG 1257
Query 1260 TTCAAAACAAACGCAAACGCGCAAATCAACACTCTTGCTGGACGAACCTCAGTCTTGAGA 1319
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1258 TTCAAAACAAACGCTAACGCGCAAATCAACACTCTGGCGGGACGAACCTCAGTCTTGAGA 1317
Query 1320 GGTTTACCA-TTGGAGGTCATAACCAATGGGTTCCAAATCTCACCCAAAGAAGCAAGGAG 1378
||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 GGTTTACCACTTGAAG-TCATAACCAATGGGTTCCAAATCTCACCCGAAGAAGCAAGGAG 1376
Query 1379 GGTCAAGTTCAACACGCTCGAGACCACTTTGACTCACAGCAGTGGCCCAGCTAGCTACGA 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGTCAAGTTCAACACGCTCGAGACCACTTTGACTCACAGCAGTGGCCCAGCTAGCTACGG 1436
Query 1439 AAGGCCAAGGGTGGCTGAAGCTTGAA-AGCTTAAAACGGCGGCATAACAATGAACCCC-- 1495
||||||||||||||||| ||||| || |||||||||| || || |||||||||||| |
Sbjct 1437 AAGGCCAAGGGTGGCTGCAGCTT-AAGAGCTTAAAACTGCAGCTTAACAATGAACCTCGA 1495
Query 1496 -TACTGTAAAAGGAAGTTAAATAGTACGTAGTAATAATAATAATAATGTACGAAAATATG 1554
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||
Sbjct 1496 GTACTGTAAAAGGAAGTTAAACAGTACGTAGTAATAATAATAAT---GTACGAAAATGTG 1552
Query 1555 ACTAGTTTTGTTGAGGTTTACCTGTAAAATGCCACTCCTTTTCTGAATAAAA 1606
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1553 ACTAGTTTTGTTGAGGTTTACCTGTAAAATGCAACTCCTTTTCTGAATAAAA 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79316861100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5