BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494585
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44110.1 | Symbols: ATPOP1, ATNAP2, POP1 | P-loop containing... 1524 0.0
AT1G03905.1 | Symbols: | P-loop containing nucleoside triphosp... 785 0.0
> AT5G44110.1 | Symbols: ATPOP1, ATNAP2, POP1 | P-loop containing
nucleoside triphosphate hydrolases superfamily protein |
chr5:17754064-17755742 REVERSE LENGTH=1077
Length=1077
Score = 1524 bits (825), Expect = 0.0
Identities = 949/1007 (94%), Gaps = 16/1007 (2%)
Strand=Plus/Plus
Query 1 tctctctctctctctctGACTCTTTGATCGGAAAAAATGGCGGAGAAAAATGCGAATGCG 60
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 35 TCTCCCTCTCTCTATCTGACTCTTTGATCGGAAAAAATGGCGGAGAAAAATGCGAGCGCG 94
Query 61 ATTGACGGTGCGATTAGGGTTAGTGGAATGCAGTTTTCTTACGATGTTCAAGATCCTATT 120
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GTGGACGGTGCAATTAGGGTTAGTGGAATGCAGTTTTCTTACGATGTTCAAGATCCTATT 154
Query 121 TTCTTCGATTTTAACCTCGATCTTCCCGCTGGATCTCGTTGCCTCTTGGTTGGTGCCAAT 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 TTCTTCGATTTTAATCTCGATCTTCCCGCTGGATCTCGTTGCCTCTTGGTTGGTGCCAAT 214
Query 181 GGATCTGGAAAAACTACATTATTGAAGATT-TTGGCTGGAAAGCATATGGTTGGAGGAAA 239
|||||||| |||||||| |||||||||||| || |||||||| |||||||||||||||||
Sbjct 215 GGATCTGGGAAAACTACGTTATTGAAGATTCTT-GCTGGAAAACATATGGTTGGAGGAAA 273
Query 240 GAATGTGGTACAAGTG-TTGGATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGTG 298
|||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 274 GAATGTTGTACAAGTGCTT-GATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGTG 332
Query 299 GTGATTTGTCTTACCTTGGAGGATCATGGAGTAAAACAGCTGGTTCTGCTGGTGAGATTC 358
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 333 GTGATTTGTCTTACCTAGGAGGATCATGGAGTAAAACTGCTGGTTCTGCTGGTGATATTC 392
Query 359 CACTACAAGGAGACTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGGATTGATCCTG 418
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CACTCCAAGGAGACTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGGATTGATCCTT 452
Query 419 TGAGAAGAGAGAAGTTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGG 478
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TCAGAAGAGAGAAGTTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGG 512
Query 479 TTTCTGATGGGCAGAGACGTCGAGTGCAAATATGCATGGGTCTCTTACATCCATTCAAGG 538
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 513 TTTCTGATGGGCAGAGACGTCGAGTGCAAATATGTATGGGTCTATTACATCCGTTCAAGG 572
Query 539 TGTTACTACTGGATGAGGTTACTGTTGACCTCGATGTTGTTGCGAGGATGGATCTGTTGG 598
| |||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 573 TATTACTACTGGATGAAGTTACTGTTGACCTCGACGTTGTTGCTAGGATGGATTTGTTGG 632
Query 599 AATTCTTTAAAGAAGAATGTGAACAGAGAGGAGCTACAATTGTATATGCAACTCATATTT 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AGTTCTTTAAAGAAGAATGTGAACAGAGAGGAGCTACAATTGTATATGCAACTCATATTT 692
Query 659 TCGACGGTCTAGAGACATGGGCTAGTCATTTGGCTTACATTAATGGAGGAGAGCTGAAAC 718
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TCGACGGGCTCGAGACATGGGCTAGTCATTTGGCTTACATTAATGGAGGAGAGCTGAAAC 752
Query 719 TCTCGGCCAAATTAGATGAGATCAAGGATCTCAAAACCTCTCCAAATCTGCTCTCTGTTG 778
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 753 TCTCGGCCAAGTTAGATGAGATCAAGGATCTCAAAACCTCACCAAATCTGCTATCTGTTG 812
Query 779 TTGAATCTTGGCTCCGGTCTGAAACCAAAGTCGAGAAGAAGACGAAGAAGAAACCTGTTG 838
||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 813 TTGAAGCTTGGCTCCGGTCTGAAACCAAAGTTGAGAAAAAGACGAAGAAGAAACCTGTTG 872
Query 839 TTACCTCTCCATTTATGTCGTCTAGACAAATGGCATATTACCGATGAATCTACATATATG 898
||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 873 TTACCTCTCCATTTATGTCGTCTAGACAAATGGCATATTACCGATGAATCT---TA-A-- 926
Query 899 CCTTTGTTTAAGAGATCAGTAAGAATAAGAGCACTTCTACTCTACATATATGCCTTTGTT 958
| || ||||| |||||||||||||||||||||||| || |||||| || |||||||||
Sbjct 927 C-TT-GTTTATGAGATCAGTAAGAATAAGAGCACTGCT--TCTACAGAT--GCCTTTGTT 980
Query 959 TTCTATGATACTTCattttttagaatccgataatttttatcatacat 1005
||||||| ||||||||| ||||||||||||||| |||||||| ||||
Sbjct 981 TTCTATGGTACTTCATTGTTTAGAATCCGATAACTTTTATCACACAT 1027
> AT1G03905.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:993400-995784 FORWARD
LENGTH=1141
Length=1141
Score = 785 bits (425), Expect = 0.0
Identities = 681/805 (85%), Gaps = 15/805 (2%)
Strand=Plus/Plus
Query 33 AAAAATGGCGGAGAAAAATGCGAATGCGATTGACGGTG-CG--ATTAGGGTTAGTGGAAT 89
|||||||||||||||| |||||| |||| || || || || ||||| ||||| || ||
Sbjct 75 AAAAATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTAT 134
Query 90 GCAGTTTTCTTACGATGTTCAAGATCCTATTTTCTTCGATTTTAACCTCGATCTTCCCGC 149
||| || | ||||| ||| | ||||| || |||||||| || |||||||||||||| ||
Sbjct 135 GCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGC 194
Query 150 TGGATCTCGTTG-CCTCTTGGTTGGTGCCAATGGATCTGGAAAAACTACATTATTGAAGA 208
||| ||||| || | || |||||||||||||||||||||| || || || ||||||||||
Sbjct 195 TGGTTCTCGCTGTCTTC-TGGTTGGTGCCAATGGATCTGGCAAGACAACCTTATTGAAGA 253
Query 209 TTTTGGCTGGAAAGCATATGGTTGGAGGAAAGAATGTGGTACAAG-TGTTGGATCGCTCA 267
|| ||||||||||||||||||| ||||||||||| || ||||||| | || | |||||
Sbjct 254 TTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAG-CCGCTCG 312
Query 268 GCATTT-CATGATACAGAGCTTGTTTGTAGTGGTGATTTGTCTTACCTTGGAGGATCATG 326
|| ||| |||||||| | |||||||| |||||||| |||||||||||||||||||||||
Sbjct 313 GC-TTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATG 371
Query 327 GAGTAAAACAGCTGGTTCTGCTGGTGAGATTCCACTACAAGGAGACTTCTCAGCAGAACA 386
||||||||| | |||||| ||||| ||| |||| || || ||||| ||||||||||||||
Sbjct 372 GAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACA 431
Query 387 TATGATATTTGGAGTTGAAGGGATTGATCCTGTGAGAAGAGAGAAGTTGATTGATCTTCT 446
||||||||||||||||||||| | |||||| ||||||||||| || |||||||||||||
Sbjct 432 TATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCT 491
Query 447 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAGACGTCGAGTGCA 506
||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 492 TGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCA 551
Query 507 AATATGCATGGGTCTCTTACATCCATTCAAGGTGTTACTACTGGATGAGGTTACTGTTGA 566
||||| ||||| |||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 552 GATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGA 611
Query 567 CCTCGATGTTGTTGCGAGGATGGATCTGTTGGAATTCTTTAAAGAAGAATGTGAACAGAG 626
||| || || ||||| ||||||||| || |||||||||| |||||||||||||| |||||
Sbjct 612 CCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAG 671
Query 627 AGGAGCTACAATTGTATATGCAACTCATATTTTCGACGGTCTAGAGACATGGGCTAGTCA 686
|||||||||||| || ||||||||||| || |||||||| |||||||||||||| | ||
Sbjct 672 AGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACA 731
Query 687 TTTGGCTTACATTAATGGA-GGAGAGCTGAAAC-TCTCGGCCAAATT-AGATGAGATCAA 743
|||||| |||||| | ||| || |||||||| | | | | ||| | | | || || |
Sbjct 732 TTTGGCCTACATTCA-GGACGGTGAGCTGAATCGTTTAT-CGAAAATGACA-GATATTGA 788
Query 744 GGATCTCAAAACCTCTCCAAATCTGCTCTCTGTTGTTGAATCTTGGCTCCGGTCTGAAAC 803
||| || ||||| || || || || ||||| || || |||||||||||||| |||||||
Sbjct 789 GGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAAT 848
Query 804 CAAAGTCGAGAAGAAGACGAAGAAG 828
|||| ||| |||||||| |||||||
Sbjct 849 CAAACTCGTGAAGAAGAAGAAGAAG 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5