BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494588
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44080.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 1371 0.0
> AT5G44080.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr5:17738652-17739873 REVERSE
LENGTH=1222
Length=1222
Score = 1371 bits (742), Expect = 0.0
Identities = 934/1018 (92%), Gaps = 48/1018 (5%)
Strand=Plus/Plus
Query 162 TTCGTCTATAAGACCTCAACTACAGTTCAGGCGAGATCTCACTAGTGGCGGTTACGGCGT 221
|||||||||||||||||||| ||||||| |||||||||| || |||| |||||||||||
Sbjct 223 TTCGTCTATAAGACCTCAACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGG 282
Query 222 AAGAAACGACGGATTATTATATAGTTCAAATTCGATGACGGTGGAAGGAATTTTACACGA 281
|||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 283 AAGAAACGACGG---ATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA 339
Query 282 TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTTC-TAGATGCTTCGATAA 340
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||
Sbjct 340 TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCAC-TCTTAGATGCGTCGATAA 398
Query 341 CTCTGATGGATGCTTCTCCAGCACCAATGGAGAT---AACAACGACGGTTTCTGATGTTG 397
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 399 ATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACAACGACGGCTTCTGATGTTG 458
Query 398 TGGATCGCGACGGCGGAGGGACGGAGACGACGTGTGGTGGGAAGAGTGTTGATGAGGTTT 457
||||| | |||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 459 TGGAT--C-ACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGATTT 515
Query 458 GGAGAGAGATGGTATCAGGAGAAAGG-AAAGGTATGAAGGAAGAGACG-CAAGAAGAGAT 515
||||||||||||||||||||| |||| ||||| ||||||||||||||| | ||||||||
Sbjct 516 GGAGAGAGATGGTATCAGGAG-AAGGTAAAGGGATGAAGGAAGAGACGTC-GGAAGAGAT 573
Query 516 AATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGATGAAACAGC---GA---- 568
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 574 AATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGC 633
Query 569 --CGGCGGAGGATTTAGATGTGAAGATTCCGCCGACGACGAATTACGGATTCGATCATTC 626
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 634 GTCGGCGGAGGATTTGGATGTGAAGATTCCG--G-TGACGAATTACGGATTCGATCATTC 690
Query 627 TGCGCCGCCGCATAATCCGTTTCAGATGATTGATAAAGTGGAAGGATCAATTGTTGCGTT 686
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 691 TGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCAATAGTTGCGTT 750
Query 687 TGGGAATGGTTTAGATGTTTATGGTggaggaggaagtggaggagtgagagggaagagagc 746
||||||||||||||||||||| ||||| | ||| | | ||||||||||||||
Sbjct 751 TGGGAATGGTTTAGATGTTTA------CGGAGG-A--GGA-G-CT-AGAGGGAAGAGAGC 798
Query 747 gagagTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGAGACAGAGAAGGATGATTAA 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGAGACAGAGAAGGATGATTAA 858
Query 807 GAATCGTGAATCTGCGGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGA 866
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGA 918
Query 867 AGCTTTGGCTGCGAAGCTTGAGGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGAGAA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 919 AGCTTTGGCTGCGAAGCTTGAGGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAA 978
Query 927 GAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTGGTTGAGAAACCGAA 986
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 979 GAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAA 1038
Query 987 GCAGCAACCACCGCGGTTTTTACGCAGGATTCGGTCTTTGGAATGGTGATAA-AGGTATA 1045
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1039 GCAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGGTGATAAGAGGTATA 1098
Query 1046 GACTTTTGAGGATTTTAGGATTTCTAAGGTTACTT--T--GTGTATGTTGTGTGTGAGAG 1101
||||||||||||||||||| | | ||| ||||||| | |||||||| |||||||||||
Sbjct 1099 GACTTTTGAGGATTTTAGGGTCT-TAATGTTACTTACTTTGTGTATGT-GTGTGTGAGAG 1156
Query 1102 A-GTATTCATAATCTGCAGCAGAGTGTAATGATTATGGTTAATAACTTAAATATTATA 1158
| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1157 TTG-ATTCATAATCTGCAGTAGAGTGTAATGATTATGGTTAATAACTTATATATTATA 1213
Score = 226 bits (122), Expect = 4e-58
Identities = 150/163 (92%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 1 AAATTTCAAAATTTGGCCGAGTCAAAGATATC-GAGTGATTCTCTGATCCGATTCCGGCG 59
||| ||||| ||||||| |||||||||| | | |||||||||||||||||||||||||||
Sbjct 36 AAAGTTCAACATTTGGCGGAGTCAAAGA-AACAGAGTGATTCTCTGATCCGATTCCGGCG 94
Query 60 AAAGAGGACGAAACAAACGGAGCTTGTTCATCATCATCTCCAGAAAATGACGTCGTTTCA 119
||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 95 AAAGAGGACGAAACAAACGGAACTTGTTCATCATCTTCTCCAGAAA-TGACGTCGTTTCA 153
Query 120 GGTGATGCGGTCTACAAACTCTAGAAACTCGGATCTATCTCGT 162
||||||||| ||| |||| || |||||||||||||||||||||
Sbjct 154 GGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGT 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5