BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494590
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 944 0.0
> AT5G44060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G04000.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:17731005-17731905 FORWARD LENGTH=901
Length=901
Score = 944 bits (511), Expect = 0.0
Identities = 671/745 (90%), Gaps = 24/745 (3%)
Strand=Plus/Plus
Query 1 AAAAAGCCTTCTCGGGTTGTCAAAAAATACTGTTTCACCGCAGTAATTAATTTTAAAAAT 60
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 106 AAAAAGCCTTCTCGGGTTGTTTAAAAATACTGTTTCACCGCAGTAATTAA-TTTAAAAAT 164
Query 61 TACTGCCGCTGACGTGGCATGCACTTAAAAGGAAACAGTCATGAATACAAAAACGATGCG 120
||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 165 TACTGTCGATGACGTGGCATGCACTTAAAAAGAAACAGCCATGAATACAAAAACGATGCG 224
Query 121 CCTTCCCCCACGCCGAGTTATCTCCGGCGCCGTCGCCGGCAAACAAACGGAATCCGCCGT 180
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 225 TCTTCCCCCACGCCGAGTTACCTCCGGCGCCGTCGCCGGCAAACAAACGGAATCCGCCGT 284
Query 181 GATAAATCCACCACCGCCGCCGTCTAAATCCATTC-TCAAGAAAACTCCGACCATCGTTC 239
|||||||||||||||||||||| ||||||||| || |||||||||| |||| |||| ||
Sbjct 285 GATAAATCCACCACCGCCGCCGACTAAATCCA-TCGTCAAGAAAACGCCGATCATCCCTC 343
Query 240 GACCAACAACCACCGCCGCCGCAGCCGTAGTCGAGCCGGTTGGTTCGAA-CAAGCTCTTA 298
||||||| ||||||||| | | |||| ||| |||||||||| ||||||| | ||||||||
Sbjct 344 GACCAACTACCACCGCCACTGTAGCCTTAGCCGAGCCGGTTTGTTCGAATC-AGCTCTTA 402
Query 299 GCCGGTTACTTGGCTCATGAGTTTCTCAGCAATGGCACACTCTTCGGAGAGCTTTGGAAT 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 403 GCCGGTTACTTGGCTCATGAGTTTCTCAACAATGGCACACTCTTCGGAGAGCTTTGGAAT 462
Query 359 CCTACTCGAGCCCAAGCCGGCCCATTAACGGCCCAATGTACTGAGACGAGAAA-AACTAA 417
|| ||| |||||||||||||||||||||| |||||| || ||| | ||||| || |||
Sbjct 463 CCAACTAAAGCCCAAGCCGGCCCATTAACGACCCAATCTATTGACCCTAGAAAGAA-TAA 521
Query 418 GCCGAGCCATGATATGGAGCCGAGTGATCAGAAACGGAGGAGGTATGTGGAGGTTGCTAA 477
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 522 GCCGAGCCATGATATAGAGCCGAGTGATCATAAACGGAGGAGATATGTGGAGGTTGCTAA 581
Query 478 CATACTCCGGGTAGATAGGACCCACTTGCCCGGTATCGTTAACCCGTCACAGCTTGCCCG 537
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 CATACTCCGGGTAGATGGGACCCATTTGCCCGGTATCGTTAACCCGTCACAGCTTGCCCG 641
Query 538 ATTCCTTAAATTGTGATGCGTAAATCCACGTGGAATCATCGTATTGGTCCGTCGTTTAGA 597
|||||||||||||||||||||||||||||||||| || | ||||||| |||||||||||
Sbjct 642 ATTCCTTAAATTGTGATGCGTAAATCCACGTGGAGTCGTATTATTGGTTCGTCGTTTAGA 701
Query 598 AAAAGAAGACAGCTGTAACACAGAAACATTCCtcttctctttctttaatttttct-t--- 653
|||| || ||||||||||||| |||||||||||||||||| ||||| |||||| | |
Sbjct 702 AAAACAAAACAGCTGTAACACCGAAACATTCCTCTTCTCTATCTTTTATTTTT-TGTCCA 760
Query 654 ttaatatttt---gtaaattgccatctctgtttctttATCGTCTTCATCGAAGAAATTGA 710
||||| |||| ||||| || ||||| || | ||||||||||||||| | ||||
Sbjct 761 TTAATGTTTTTTTGTAAAAAGC--TCTCTCTT-C---ATCGTCTTCATCGAA-A--TTGA 811
Query 711 CTCAGAAATGTTTTAGGtttttttt 735
||||||||||||||||| |||||||
Sbjct 812 CTCAGAAATGTTTTAGGGTTTTTTT 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5