BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494592
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1736 0.0
> AT5G44040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G04030.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:17719659-17721580 REVERSE LENGTH=1720
Length=1720
Score = 1736 bits (940), Expect = 0.0
Identities = 1249/1393 (90%), Gaps = 41/1393 (3%)
Strand=Plus/Plus
Query 76 TAGAAGAGAATGGGTTGCTTACTTGGTTGCTTTGGTCGTCGGAAGAATCGTCGCCGTCAA 135
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 224 TAGAAGAGAATGGGTTGCTTACTTGGTTGCTTCGGTCGTCGGAAGAATCGTCGCCGTCAG 283
Query 136 AGACGTC-GAGAATC-TTTCAATCCTTGTTTAAACAGAATCTCTGAGGAATCTATAAAGG 193
||||| | ||||||| |||| | || ||||||||||||||||||||||| || |||||
Sbjct 284 AGACG-CAGAGAATCTTTTC-AGCCACGTTTAAACAGAATCTCTGAGGAAGCTGCAAAGG 341
Query 194 ATGTTCTTTTGAATCTTAGGGTTTCTAATGTTGAACAAGTCCCAAAGTATGCAAAAGATT 253
||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 342 ATGTTCTTTTGAATCTTAGGGTTCCTACTGTTGAAGAAGTCCCAAAGTATGCAAAAGATT 401
Query 254 CAAGTGTTTTGGAAGTCTCTAAAATCTCGGAGGTGTCTCCAAAAGATGATCATCT-AA-G 311
||| |||| |||||||| ||||||||||||||||||||||||| ||| ||||| | || |
Sbjct 402 CAACTGTTATGGAAGTCCCTAAAATCTCGGAGGTGTCTCCAAAGGATAATCATGTGAACG 461
Query 312 -TGTTGAGGAAGTATCTAAAGTTTCTGTGATTCCGATTACTAATATCTTCTGTGGCAAGG 370
||||||| |||| ||| ||||||||| | |||||| ||| ||| |||||| |||||
Sbjct 462 TTGTTGAGAAAGTCCCTACAGTTTCTGTAACTCCGATCACTGATA---TCTGTGACAAGG 518
Query 371 TTGAGGAGAAACAAAGTCCGAGTCCGAGTCCAAATCGTAAGAGAGTGACTTTCGACACCA 430
||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 519 TTGAGGAGAAACAGAGTCCGAGTCCAAGTCCAAATCGTAAGAGAGTAACTTTTGACACCA 578
Query 431 ATGTTACAACATATGAACACATTGTAGTAGGTGAATCTGTTGAGCTCTTTGAGGAGAAGA 490
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 579 ATGTTAAAACATATGAACACATTGCAGTAGATGAATCTGTTGAGCTCTTTGAAGAGAAGA 638
Query 491 AAGAAGAGGTGAAGTCGAGGCAGG--AGA-G--CG-AT--A-TTA-C-----TACGTCGA 535
|||||||||||||||||||||||| || | || | | | | ||| || |
Sbjct 639 AAGAAGAGGTGAAGTCGAGGCAGGCTCGATGTTCGTCTGAAGGGAGCGATGTTACTTCTA 698
Query 536 ACTCGTCAGGGTCTTATCCTTCAAATCATAGATATCAGAATTGCAGAGAAAGTGATGATG 595
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 699 ACTCGTCAGGGTCTTATCCTTCTAACCATAGATATCAGAATTGCAGAGAGAGTGATGATG 758
Query 596 AAGAGGAGGATGTAACAGACTGTGACGAAAGCGATCTTGAGGATA-T--TGATGATG--- 649
|||||||||||||||| || |||||||| |||||||||||||||| | ||||||||
Sbjct 759 AAGAGGAGGATGTAACGGATTGTGACGATAGCGATCTTGAGGATACTGATGATGATGATT 818
Query 650 GTGGGCTGCTTGATGAAGACTATTATAATGATGACAATTATGAGGATAAGCTGCATAACT 709
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 819 GTGGGCTGCTAGATGATGACTATTATAATGATGACAATTATGAGGACAAGCTGCACAACT 878
Query 710 GGGATAAAGTAGTTTATACCGAGGAGATTGCGGATAATGTTATGGATATCA-AGAGGGTT 768
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 879 GGGATAAAGTAGTTTATACGGAGGAGATTGCGGATAATGTTATGGATAT-AGAGAGGGTT 937
Query 769 GAAGAAAAGAGTAATGTCAGTGCTAGAGACAGGAGTGGGTATGTTAACT-CAGTACTGAA 827
||||||||| ||| ||| |||| ||||||||| ||||| ||||| || | ||||||||||
Sbjct 938 GAAGAAAAGGGTAGTGTGAGTGTTAGAGACAGAAGTGGATATGTCAA-TGCAGTACTGAA 996
Query 828 CCCGATCGAGAATCTTTCCCAATGGAAAGCTGTGAAATCCAAAGGAAG---AACAACTCA 884
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 997 CCCGATTGAGAATCTTTCCCAATGGAAAGCTGTGAAAGCCAAAGGAAGAACAACAACTCA 1056
Query 885 AACACAGCCTCGTAAGGAGAATGCGATAAATGCTTCCTTCAGCTTGGAGCCTCAGGTTGA 944
|||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 1057 AACACAGCCTCGGAAGGAGAATGTGATAATTGCTTCCTTCAGCTTGGAGTCTCAGGTTGA 1116
Query 945 TGAGTTATCATCATCATTCAGCTTGAACCAGAAATCAAGAGATGAAACTAAGAAACAGAG 1004
||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1117 TGATTTATCATCAACATTCAGCTTGAACCGGAAATCAAGAGATGAAACTGAGAAACAGAG 1176
Query 1005 AACTCAAGAAATAGCTGTTGATGCTAGTCTCTCAACTTGGTTATCCACACCACAGACCAC 1064
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 1177 AACTCAAGAAATAGCTGTTGATGCTAGTCTTTCAACTTGGTTATCCACATCACAAACCAC 1236
Query 1065 GGCCAGCGGATGCAGCAGTGTTGAAACCGCAATGTCTGAGAAGAATAAATACTCGAAACC 1124
| ||||||| || ||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 1237 GACCAGCGGTTGTAGCAGTGTTGAAACCACAATGTCCGAGAAGAAGAAATACTCGAAACT 1296
Query 1125 GGTTCAAAGCCACGATGAAAGACCTATACTGGGCGCATTAACTGCAGAGGAGATAAAGCA 1184
||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1297 GGTTCAATGCCATGATGAAAGACCTATATTGGGCGCGTTAACTGCAGAGGAGATAAAGCA 1356
Query 1185 GTTCTCAGCTACGGATTCGCTAAGGAAATCATCGCCAAGTAGAAGCCCTGAATCACCAAT 1244
||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||
Sbjct 1357 GTTCTCAGCTACGAATTCGCCAAGGAAATC---GCCAAGTAGAAGCCCTGAATCACCGAT 1413
Query 1245 AATCGGAACAGTCGGTGGTTATTGGAACAATCACTCAATGGCCACCAGCAAGTACAGTTG 1304
||| |||||||| |||||||| ||||||| |||||||||||| || | |||||||||| |
Sbjct 1414 AATTGGAACAGTTGGTGGTTACTGGAACAGTCACTCAATGGCAACGAACAAGTACAGTCG 1473
Query 1305 AAGCTCTTAAAACTCAAATTCTACAACAGAGAAACAATTCCACACATGTTTGGTTACTAA 1364
||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1474 AAGTTCTTAGAACTCCAATTCCACAACAGAGAAAGAATTCCACACATGTTTGGTTACTAC 1533
Query 1365 ATTGCCTTTGTGAAATTATTTTCATCACTCTATTTGTTtgtgtgtgtgtgGTTGATAACC 1424
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1534 ATTGCCTTTGTGAAATTATTTTTATCACTCTGTTTGTTTGTGTGTGTGTGGTTGATAACA 1593
Query 1425 TAATCGTTGTGTT 1437
||||||||||||
Sbjct 1594 AAATCGTTGTGTT 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5